Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os01g0279100 Oryza sativa ssp. japonica HOM05D004558 ORTHO05D005647 7.2e-234 813.5 409 100.0
Zm00001eb332650 Zea mays HOM05D004558 ORTHO05D005647 5.9e-212 740.7 410 91.7
Zm00001eb129000 Zea mays HOM05D004558 ORTHO05D005647 2.9e-211 738.4 412 92.2
arahy.Tifrunner.gnm1.ann1.VDKY5W Arachis hypogaea HOM05D004558 ORTHO05D005647 6.0e-196 687.6 409 83.9
Phvul.001G108700 Phaseolus vulgaris HOM05D004558 ORTHO05D005647 6.0e-196 687.6 405 84.4
PGR042G2423 Punica granatum HOM05D004558 ORTHO05D005647 1.3e-195 686.4 407 84.8
Sc19g0007850 Simmondsia chinensis HOM05D004558 ORTHO05D005647 1.3e-195 686.4 375 90.1
MBI13_g30268_MAGBIO Magnolia biondii HOM05D004558 ORTHO05D005647 8.6e-195 683.7 405 84.0
Manes.09G073800 Manihot esculenta HOM05D004558 ORTHO05D005647 1.5e-194 682.9 405 84.0
AUR62020990 Chenopodium quinoa HOM05D004558 ORTHO05D005647 1.9e-194 682.6 405 84.9
Lj1g0019045 Lotus japonicus HOM05D004558 ORTHO05D005647 1.9e-194 682.6 388 85.8
Thecc.05G130200 Theobroma cacao HOM05D004558 ORTHO05D005647 1.9e-194 682.6 405 84.4
arahy.Tifrunner.gnm1.ann1.XE2WF0 Arachis hypogaea HOM05D004558 ORTHO05D005647 5.6e-194 681.0 358 92.2
Cpa.g.sc92.57 Carica papaya HOM05D004558 ORTHO05D005647 7.3e-194 680.6 410 83.7
VMungo1383G3341 Vigna mungo HOM05D004558 ORTHO05D005647 9.5e-194 680.2 405 84.2
TAR369G0680 Trochodendron aralioides HOM05D004558 ORTHO05D005647 2.1e-193 679.1 405 84.0
Eucgr.A02177 Eucalyptus grandis HOM05D004558 ORTHO05D005647 2.8e-193 678.7 409 84.4
TPR.G23197 Trifolium pratense HOM05D004558 ORTHO05D005647 2.8e-193 678.7 408 83.6
AUR62018443 Chenopodium quinoa HOM05D004558 ORTHO05D005647 4.7e-193 677.9 405 84.4
CDE02G2354 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 8.0e-193 677.2 409 83.9
Glyma.03G119500 Glycine max HOM05D004558 ORTHO05D005647 1.4e-192 676.4 412 82.8
Duzib128G1152 Durio zibethinus HOM05D004558 ORTHO05D005647 1.8e-192 676.0 405 84.0
Prupe.7G022500 Prunus persica HOM05D004558 ORTHO05D005647 3.1e-192 675.2 386 87.0
TAR546G0001 Trochodendron aralioides HOM05D004558 ORTHO05D005647 3.1e-192 675.2 405 83.5
Hund24509 Selenicereus undatus HOM05D004558 ORTHO05D005647 4.0e-192 674.9 365 90.7
GSVIVG01025841001 Vitis vinifera HOM05D004558 ORTHO05D005647 4.0e-192 674.9 370 88.6
Cfa019915 Carpinus fangiana HOM05D004558 ORTHO05D005647 5.2e-192 674.5 408 82.6
CiPaw.09G162600 Carya illinoinensis HOM05D004558 ORTHO05D005647 5.2e-192 674.5 387 85.3
Gohir.A01G192400 Gossypium hirsutum HOM05D004558 ORTHO05D005647 6.8e-192 674.1 407 82.6
Nitab4.5_0000123g0170 Nicotiana tabacum HOM05D004558 ORTHO05D005647 1.5e-191 672.9 407 83.3
Potri.006G027300 Populus trichocarpa HOM05D004558 ORTHO05D005647 2.6e-191 672.2 407 82.6
Nitab4.5_0001270g0120 Nicotiana tabacum HOM05D004558 ORTHO05D005647 4.4e-191 671.4 406 83.0
RcHm_v2.0_Chr3g0494361 Rosa chinensis HOM05D004558 ORTHO05D005647 4.4e-191 671.4 359 91.1
Duzib093G1273 Durio zibethinus HOM05D004558 ORTHO05D005647 5.8e-191 671.0 407 82.8
Aqoxy2G00035_Aqoxy2G00036 Aquilegia oxysepala HOM05D004558 ORTHO05D005647 7.5e-191 670.6 405 82.5
Ciclev10011842m.g Citrus clementina HOM05D004558 ORTHO05D005647 7.5e-191 670.6 372 87.9
ClCG04G004930 Citrullus lanatus HOM05D004558 ORTHO05D005647 9.8e-191 670.2 415 82.7
Haze_20335 Corylus avellana HOM05D004558 ORTHO05D005647 9.8e-191 670.2 406 82.3
ATR1096G103 Amborella trichopoda HOM05D004558 ORTHO05D005647 1.7e-190 669.5 406 83.5
FAN19G1019 Fragaria x ananassa HOM05D004558 ORTHO05D005647 2.2e-190 669.1 374 88.5
CsaV3_4G031720 Cucumis sativus L. HOM05D004558 ORTHO05D005647 3.7e-190 668.3 413 82.3
Migut.K00174 Erythranthe guttata HOM05D004558 ORTHO05D005647 4.9e-190 667.9 409 81.9
Sabra06G0020200 Salix brachista HOM05D004558 ORTHO05D005647 4.9e-190 667.9 408 82.6
HPP92_000696 Vanilla planifolia HOM05D004558 ORTHO05D005647 4.9e-190 667.9 412 80.8
Actinidia00883 Actinidia chinensis HOM05D004558 ORTHO05D005647 6.4e-190 667.5 357 90.8
FvH4_1g28960 Fragaria vesca HOM05D004558 ORTHO05D005647 8.3e-190 667.2 374 88.2
FAN23G1063 Fragaria x ananassa HOM05D004558 ORTHO05D005647 1.1e-189 666.8 373 87.9
ECA247G1747 Erigeron canadensis HOM05D004558 ORTHO05D005647 1.4e-189 666.4 409 80.9
CSS0026074 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.9e-189 666.0 356 90.7
CSS0045826 Camellia sinensis var. sinensis HOM05D004558 ORTHO05D005647 1.9e-189 666.0 356 90.7
Cc06_g22740 Coffea canephora HOM05D004558 ORTHO05D005647 3.2e-189 665.2 383 85.9
SGA_v2.0_scaffold66G22316 Striga asiatica HOM05D004558 ORTHO05D005647 3.2e-189 665.2 407 82.8
FAN26G0634 Fragaria x ananassa HOM05D004558 ORTHO05D005647 4.1e-189 664.8 373 87.7
FAN28G2842 Fragaria x ananassa HOM05D004558 ORTHO05D005647 4.1e-189 664.8 373 87.7
SEGI_29193 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.0e-189 664.1 382 85.6
TWI53G2040 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 7.0e-189 664.1 410 81.2
Actinidia38207 Actinidia chinensis HOM05D004558 ORTHO05D005647 1.2e-188 663.3 357 90.2
BcaC07g40007 Brassica carinata HOM05D004558 ORTHO05D005647 1.2e-188 663.3 410 80.2
Gohir.D01G177500 Gossypium hirsutum HOM05D004558 ORTHO05D005647 1.2e-188 663.3 407 81.3
Lalb_Chr14g0365301 Lupinus albus HOM05D004558 ORTHO05D005647 1.2e-188 663.3 405 80.5
Sabra16G0030900 Salix brachista HOM05D004558 ORTHO05D005647 1.2e-188 663.3 408 81.4
PSO384G3158 Papaver somniferum HOM05D004558 ORTHO05D005647 2.1e-188 662.5 409 80.4
THA.LOC104824384 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 2.1e-188 662.5 409 80.4
Aa31LG10G11840 Aethionema arabicum HOM05D004558 ORTHO05D005647 2.7e-188 662.1 405 81.2
THA.LOC104803235 Tarenaya hassleriana HOM05D004558 ORTHO05D005647 2.7e-188 662.1 383 84.1
Thhalv10006009m.g Eutrema salsugineum HOM05D004558 ORTHO05D005647 3.5e-188 661.8 413 80.6
PSO339G0825 Papaver somniferum HOM05D004558 ORTHO05D005647 3.5e-188 661.8 409 80.2
CANSAT78G1575 Cannabis sativa HOM05D004558 ORTHO05D005647 4.6e-188 661.4 405 82.7
QL07p015188 Quercus lobata HOM05D004558 ORTHO05D005647 4.6e-188 661.4 408 81.1
Potri.016G025000 Populus trichocarpa HOM05D004558 ORTHO05D005647 7.8e-188 660.6 407 81.3
Lsat_1_v5_gn_9_30221 Lactuca sativa HOM05D004558 ORTHO05D005647 1.0e-187 660.2 411 80.3
Oeu023011.1 Olea europaea HOM05D004558 ORTHO05D005647 1.3e-187 659.8 382 85.1
Rhsim04G0119100 Rhododendron simsii HOM05D004558 ORTHO05D005647 1.7e-187 659.4 350 91.4
vmacro08967 Vaccinium macrocarpon HOM05D004558 ORTHO05D005647 2.3e-187 659.1 350 91.7
Gorai.002G225700 Gossypium raimondii HOM05D004558 ORTHO05D005647 8.6e-187 657.1 417 79.6
Hma1.2p1_0251F.1_g102500 Hydrangea macrophylla HOM05D004558 ORTHO05D005647 8.6e-187 657.1 377 85.7
Oeu060750.2 Olea europaea HOM05D004558 ORTHO05D005647 8.6e-187 657.1 417 80.1
Sed0025713 Sechium edule HOM05D004558 ORTHO05D005647 1.9e-186 656.0 415 80.2
TWI77G0093 Tripterygium wilfordii HOM05D004558 ORTHO05D005647 1.9e-186 656.0 406 80.8
DCAR_013513 Daucus carota HOM05D004558 ORTHO05D005647 2.5e-186 655.6 406 80.3
HanXRQChr10g0291961 Helianthus annuus HOM05D004558 ORTHO05D005647 2.5e-186 655.6 401 80.8
A09p49810 Brassica napus HOM05D004558 ORTHO05D005647 3.3e-186 655.2 410 80.0
BraA09t40434Z Brassica rapa HOM05D004558 ORTHO05D005647 3.3e-186 655.2 410 80.0
BcaC08g44811 Brassica carinata HOM05D004558 ORTHO05D005647 4.3e-186 654.8 415 80.0
PGSC0003DMG400007188 Solanum tuberosum HOM05D004558 ORTHO05D005647 4.3e-186 654.8 405 81.5
BolC6t37555H Brassica oleracea HOM05D004558 ORTHO05D005647 7.3e-186 654.1 413 80.1
BraA07t29976Z Brassica rapa HOM05D004558 ORTHO05D005647 9.5e-186 653.7 413 79.9
BcaB02g07634 Brassica carinata HOM05D004558 ORTHO05D005647 1.2e-185 653.3 413 79.9
Sp5g05650 Schrenkiella parvula HOM05D004558 ORTHO05D005647 1.2e-185 653.3 394 82.2
Sopen10g028720 Solanum pennellii HOM05D004558 ORTHO05D005647 1.2e-185 653.3 405 81.2
A07p23140 Brassica napus HOM05D004558 ORTHO05D005647 1.6e-185 652.9 415 79.5
Medtr7g088340 Medicago truncatula HOM05D004558 ORTHO05D005647 2.1e-185 652.5 352 90.3
Lj1A1078T64 Lonicera japonica HOM05D004558 ORTHO05D005647 2.8e-185 652.1 348 90.5
Solyc10g077040.2 Solanum lycopersicum HOM05D004558 ORTHO05D005647 3.6e-185 651.7 405 81.0
MSTRG.6287 Avicennia marina HOM05D004558 ORTHO05D005647 6.2e-185 651.0 408 80.4
AL5G38370 Arabidopsis lyrata HOM05D004558 ORTHO05D005647 1.4e-184 649.8 357 88.5
Rhsim04G0119000 Rhododendron simsii HOM05D004558 ORTHO05D005647 1.4e-184 649.8 364 87.9
BcaC07g40105 Brassica carinata HOM05D004558 ORTHO05D005647 1.8e-184 649.4 413 79.2
DCAR_016944 Daucus carota HOM05D004558 ORTHO05D005647 1.8e-184 649.4 406 79.3
CAN.G959.37 Capsicum annuum HOM05D004558 ORTHO05D005647 2.3e-184 649.0 405 80.0
CARHR167090 Cardamine hirsuta HOM05D004558 ORTHO05D005647 4.0e-184 648.3 410 80.0
unitig_46.g18485 Utricularia gibba HOM05D004558 ORTHO05D005647 5.2e-184 647.9 408 80.4
Carub.0005s2368 Capsella rubella HOM05D004558 ORTHO05D005647 6.8e-184 647.5 409 80.4
Peaxi162Scf00003g05355 Petunia axillaris HOM05D004558 ORTHO05D005647 8.9e-184 647.1 426 78.6
C06p23840 Brassica napus HOM05D004558 ORTHO05D005647 3.7e-182 641.7 419 78.5
Lalb_Chr24g0400681 Lupinus albus HOM05D004558 ORTHO05D005647 9.2e-181 637.1 408 77.0
AagrBONN_evm.TU.Sc2ySwM_228.50 Anthoceros agrestis HOM05D004558 ORTHO05D005647 2.4e-176 622.5 358 82.4
SMO119G0375 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 2.0e-175 619.4 364 81.0
AT3G56940 Arabidopsis thaliana HOM05D004558 ORTHO05D005647 6.4e-174 614.4 333 88.9
Mapoly0124s0017 Marchantia polymorpha HOM05D004558 ORTHO05D005647 1.4e-173 613.2 353 83.0
Pp3c11_7910 Physcomitrium patens HOM05D004558 ORTHO05D005647 1.6e-172 609.8 372 78.5
CDE04G3757 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.3e-171 606.7 405 75.8
unitig_37.g12773 Utricularia gibba HOM05D004558 ORTHO05D005647 7.3e-170 600.9 373 81.2
EL10Ac3g07349 Beta vulgaris HOM05D004558 ORTHO05D005647 1.9e-165 586.3 406 75.1
SGA_v2.0_scaffold69G23196 Striga asiatica HOM05D004558 ORTHO05D005647 5.8e-159 564.7 398 74.6
Atru.chr1.1539 Acer truncatum HOM05D004558 ORTHO05D005647 1.0e-155 553.9 286 93.0
PRCOL_00006479 Prasinoderma coloniale HOM05D004558 ORTHO05D005647 1.3e-150 537.0 357 71.7
Ca_08344_v3 Cicer arietinum L. HOM05D004558 ORTHO05D005647 8.2e-145 517.7 281 89.3
Cre12.g510050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 1.8e-144 516.5 385 65.7
Psat3g082520 Pisum sativum HOM05D004558 ORTHO05D005647 4.0e-144 515.4 320 80.6
Dinv11638 Davidia involucrata HOM05D004558 ORTHO05D005647 2.9e-142 509.2 317 80.4
Pp3c7_26570 Physcomitrium patens HOM05D004558 ORTHO05D005647 4.9e-142 508.4 286 85.7
Ah.04g150190 Amaranthus hybridus HOM05D004558 ORTHO05D005647 4.2e-141 505.4 375 70.9
HPP92_000650 Vanilla planifolia HOM05D004558 ORTHO05D005647 9.3e-141 504.2 316 79.4
SMO115G0161 Selaginella moellendorffii HOM05D004558 ORTHO05D005647 3.7e-137 492.3 394 64.0
MCO13G411 Micromonas commoda HOM05D004558 ORTHO05D005647 1.4e-136 490.3 345 68.7
Cre07.g346050 Chlamydomonas reinhardtii HOM05D004558 ORTHO05D005647 8.2e-129 464.5 384 61.5
SalBow6G0122 Salvia bowleyana HOM05D004558 ORTHO05D005647 6.9e-128 461.5 248 89.1
Glyma.19G123800 Glycine max HOM05D004558 ORTHO05D005647 5.0e-126 455.3 300 77.7
MELO3C026802.2 Cucumis melo HOM05D004558 ORTHO05D005647 1.6e-124 450.3 293 79.2
SalBow1G4785 Salvia bowleyana HOM05D004558 ORTHO05D005647 7.7e-119 431.4 330 68.2
CDE02G0342 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.9e-117 426.8 280 76.1
CBR_g50688 Chara braunii HOM05D004558 ORTHO05D005647 1.1e-101 374.4 287 66.2
Oeu021019.1 Olea europaea HOM05D004558 ORTHO05D005647 5.7e-90 335.5 321 58.6
BolC4t25242H Brassica oleracea HOM05D004558 ORTHO05D005647 2.6e-58 230.3 132 84.1
C04p35620 Brassica napus HOM05D004558 ORTHO05D005647 3.4e-58 229.9 132 83.3
CBR_g55376 Chara braunii HOM05D004558 ORTHO05D005647 6.2e-52 209.1 384 36.7
SEGI_05566 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 4.2e-48 196.4 118 82.2
SEGI_20922 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 5.4e-48 196.1 118 81.4
C08p32210 Brassica napus HOM05D004558 ORTHO05D005647 2.6e-42 177.2 104 83.7
A04p03620 Brassica napus HOM05D004558 ORTHO05D005647 1.3e-41 174.9 103 83.5
BraA04t16073Z Brassica rapa HOM05D004558 ORTHO05D005647 1.3e-41 174.9 103 83.5
Pp3c2_30650 Physcomitrium patens HOM05D004558 ORTHO05D005647 6.7e-38 162.5 101 79.2
BcaC02g09879 Brassica carinata HOM05D004558 ORTHO05D005647 1.6e-36 157.9 94 81.9
CDE02G4696 Ceratophyllum demersum HOM05D004558 ORTHO05D005647 1.3e-33 148.3 94 76.6
Ah.13g077400 Amaranthus hybridus HOM05D004558 ORTHO05D000435 1.5e-26 124.8 125 56.8
BcaB02g08342 Brassica carinata HOM05D004558 ORTHO05D005647 1.5e-26 124.8 105 65.7
Lalb_Chr22g0357681 Lupinus albus HOM05D004558 ORTHO05D005647 1.7e-25 121.3 95 65.3
ClCG10G010310 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.4e-24 118.2 71 76.1
AagrBONN_evm.TU.Sc2ySwM_368.2127 Anthoceros agrestis HOM05D004558 ORTHO05D005647 3.5e-23 113.6 59 88.1
MD00G1107700 Malus domestica HOM05D004558 ORTHO05D005647 7.4e-21 105.9 62 83.9
ClCG10G010320 Citrullus lanatus HOM05D004558 ORTHO05D005647 1.3e-20 105.1 81 67.9
AagrBONN_evm.TU.Sc2ySwM_344.4282 Anthoceros agrestis HOM05D004558 ORTHO05D000003 1.4e-19 101.7 59 83.1
Lalb_Chr22g0358091 Lupinus albus HOM05D004558 ORTHO05D005647 1.5e-18 98.2 47 87.2
SEGI_00644 Sequoiadendron giganteum HOM05D004558 ORTHO05D005647 7.4e-13 79.3 42 92.9
Lalb_Chr22g0358081 Lupinus albus HOM05D004558 ORTHO05D005647 3.1e-11 73.9 39 89.7


User provided reference genes

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