Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 1.4e-40 169.1 82 100.0
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 1.2e-26 122.9 76 81.6
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 3.5e-23 111.3 83 67.5
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 3.5e-23 111.3 83 67.5
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 6.0e-23 110.5 83 69.9
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 1.8e-22 109.0 82 69.5
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 2.3e-22 108.6 83 69.9
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 3.0e-22 108.2 83 71.1
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 1.1e-21 106.3 82 68.3
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.1e-21 106.3 82 70.7
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 2.5e-21 105.1 83 67.5
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 3.3e-21 104.8 82 67.1
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 5.6e-21 104.0 82 65.9
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 1.6e-20 102.4 83 63.9
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 1.6e-20 102.4 79 63.3
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 2.8e-20 101.7 81 67.9
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 2.8e-20 101.7 88 61.4
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 2.8e-20 101.7 82 64.6
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 4.8e-20 100.9 82 64.6
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 4.8e-20 100.9 82 64.6
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 4.8e-20 100.9 84 61.9
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 4.8e-20 100.9 87 60.9
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 8.1e-20 100.1 83 65.1
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 8.1e-20 100.1 79 65.8
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 8.1e-20 100.1 82 67.1
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 5.3e-19 97.4 83 65.1
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 5.3e-19 97.4 82 63.4
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 6.9e-19 97.1 82 64.6
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 6.9e-19 97.1 83 63.9
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 9.0e-19 96.7 83 63.9
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 9.0e-19 96.7 91 58.2
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 9.0e-19 96.7 91 58.2
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.2e-18 96.3 82 58.5
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 1.2e-18 96.3 84 65.5
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 2.0e-18 95.5 87 57.5
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 2.6e-18 95.1 83 62.7
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.6e-18 95.1 83 62.7
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 2.6e-18 95.1 82 62.2
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 3.4e-18 94.7 82 62.2
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 4.5e-18 94.4 78 64.1
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 5.8e-18 94.0 91 57.1
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 7.6e-18 93.6 82 61.0
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 1.0e-17 93.2 83 62.7
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 1.3e-17 92.8 77 64.9
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 1.7e-17 92.4 81 63.0
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 2.9e-17 91.7 87 59.8
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 4.9e-17 90.9 82 57.3
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 4.9e-17 90.9 80 58.8
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 6.5e-17 90.5 82 61.0
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 6.5e-17 90.5 77 62.3
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 6.5e-17 90.5 82 59.8
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 8.4e-17 90.1 79 62.0
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 1.1e-16 89.7 82 62.2
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 1.4e-16 89.4 79 60.8
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 1.4e-16 89.4 82 58.5
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.9e-16 89.0 77 61.0
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 1.9e-16 89.0 81 60.5
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 1.9e-16 89.0 89 53.9
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 1.9e-16 89.0 79 58.2
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 3.2e-16 88.2 79 63.3
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 4.2e-16 87.8 81 60.5
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 4.2e-16 87.8 78 60.3
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 4.2e-16 87.8 78 60.3
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 4.2e-16 87.8 85 55.3
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 7.1e-16 87.0 81 63.0
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 9.3e-16 86.7 85 56.5
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.2e-15 86.3 80 60.0
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.2e-15 86.3 81 63.0
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 2.1e-15 85.5 79 59.5
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 2.7e-15 85.1 79 54.4
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 2.7e-15 85.1 82 59.8
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 3.5e-15 84.7 82 54.9
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 7.9e-15 83.6 84 57.1
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 1.0e-14 83.2 77 62.3
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 1.3e-14 82.8 77 57.1
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.3e-14 82.8 77 59.7
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 3.0e-14 81.6 82 53.7
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 3.9e-14 81.3 87 52.9
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 3.9e-14 81.3 83 57.8
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 8.7e-14 80.1 82 54.9
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 1.1e-13 79.7 77 59.7
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 1.1e-13 79.7 77 59.7
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.1e-13 79.7 83 54.2
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 1.1e-13 79.7 82 54.9
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 1.5e-13 79.3 76 53.9
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 1.9e-13 79.0 79 57.0
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 1.9e-13 79.0 77 54.5
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 2.5e-13 78.6 78 56.4
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 2.5e-13 78.6 84 48.8
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 4.3e-13 77.8 78 55.1
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 4.3e-13 77.8 82 54.9
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 4.3e-13 77.8 93 48.4
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 4.3e-13 77.8 78 55.1
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 4.3e-13 77.8 79 55.7
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 5.7e-13 77.4 81 55.6
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 7.4e-13 77.0 82 51.2
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 7.4e-13 77.0 82 54.9
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 7.4e-13 77.0 85 50.6
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 9.6e-13 76.6 84 51.2
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 9.6e-13 76.6 82 50.0
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 1.3e-12 76.3 82 53.7
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.3e-12 76.3 82 48.8
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.3e-12 76.3 82 48.8
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.3e-12 76.3 85 56.5
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 1.6e-12 75.9 78 51.3
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 2.1e-12 75.5 82 50.0
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 2.1e-12 75.5 84 50.0
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.7e-12 74.7 84 48.8
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 3.7e-12 74.7 82 51.2
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 4.8e-12 74.3 85 52.9
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 4.8e-12 74.3 86 50.0
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 4.8e-12 74.3 82 53.7
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 6.2e-12 73.9 83 51.8
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 6.2e-12 73.9 82 51.2
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 8.2e-12 73.6 84 50.0
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 8.2e-12 73.6 82 47.6
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.1e-11 73.2 91 45.1
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 1.1e-11 73.2 58 65.5
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 1.1e-11 73.2 71 56.3
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.4e-11 72.8 84 50.0
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 1.4e-11 72.8 82 51.2
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.4e-11 72.8 79 53.2
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.4e-11 72.8 84 48.8
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 3.1e-11 71.6 78 52.6
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 3.1e-11 71.6 82 50.0
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 3.1e-11 71.6 78 51.3
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 4.0e-11 71.2 79 51.9
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 4.0e-11 71.2 76 50.0
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 4.0e-11 71.2 83 53.0
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 4.0e-11 71.2 76 50.0
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 4.0e-11 71.2 82 53.7
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 5.3e-11 70.9 84 47.6
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 9.0e-11 70.1 79 50.6
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 9.0e-11 70.1 76 50.0
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 9.0e-11 70.1 79 50.6
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 2.0e-10 68.9 59 61.0
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 2.0e-10 68.9 80 52.5
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 4.5e-10 67.8 82 51.2
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 4.5e-10 67.8 77 49.4
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 4.5e-10 67.8 83 51.8
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 4.5e-10 67.8 98 43.9
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 5.8e-10 67.4 80 47.5
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 7.6e-10 67.0 75 53.3
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 2.2e-09 65.5 78 47.4
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 2.9e-09 65.1 79 49.4
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 2.9e-09 65.1 91 46.2
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 3.8e-09 64.7 79 49.4
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 5.0e-09 64.3 80 53.8
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 6.5e-09 63.9 71 50.7
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 8.4e-09 63.5 79 45.6
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 1.1e-08 63.2 71 52.1
FAN13G0743 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.1e-08 63.2 74 47.3
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 1.4e-08 62.8 81 45.7
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 2.5e-08 62.0 81 45.7
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 2.5e-08 62.0 79 45.6
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 3.2e-08 61.6 77 51.9
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 4.2e-08 61.2 81 44.4
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 4.2e-08 61.2 95 42.1
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 5.5e-08 60.8 77 45.5
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 7.1e-08 60.5 79 44.3
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 2.7e-07 58.5 86 48.8
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 3.5e-07 58.2 89 40.4
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 6.1e-07 57.4 78 44.9
SalBow6G1847 Salvia bowleyana HOM05D039222 ORTHO05D004480 1.0e-06 56.6 39 74.4
FAN04G1321 Fragaria x ananassa HOM05D004051 ORTHO05D004480 6.7e-06 53.9 39 69.2


User provided reference genes

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