Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 3.8e-106 388.3 209 100.0
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 2.3e-74 282.7 205 77.6
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 2.8e-72 275.8 208 72.6
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 1.0e-71 273.9 208 71.2
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 2.0e-70 269.6 208 71.6
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 2.0e-70 269.6 208 71.6
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 3.4e-70 268.9 209 71.8
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 5.8e-70 268.1 209 71.8
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 1.3e-69 266.9 208 71.2
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 1.3e-69 266.9 206 70.9
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 2.2e-69 266.2 208 70.7
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 1.1e-68 263.8 209 70.3
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 3.0e-66 255.8 204 71.6
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 6.2e-64 248.1 205 68.8
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 6.2e-64 248.1 207 68.6
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 2.3e-63 246.1 208 67.8
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 1.5e-62 243.4 203 67.5
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 2.2e-61 239.6 210 66.2
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 4.9e-61 238.4 180 70.0
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 8.3e-61 237.7 186 71.0
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.1e-60 237.3 205 66.3
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 3.2e-60 235.7 192 68.2
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 4.1e-60 235.3 205 65.4
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 7.0e-60 234.6 198 66.2
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 7.0e-60 234.6 209 66.0
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 9.2e-60 234.2 208 63.9
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 1.2e-59 233.8 211 66.8
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 2.7e-59 232.6 212 64.6
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 4.6e-59 231.9 184 66.8
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 4.6e-59 231.9 208 64.9
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 6.0e-59 231.5 190 69.5
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 7.8e-59 231.1 174 74.1
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 1.7e-58 229.9 189 68.8
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 1.7e-58 229.9 215 62.8
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 3.0e-58 229.2 188 69.1
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 5.1e-58 228.4 208 62.5
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 6.6e-58 228.0 187 69.5
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 1.1e-57 227.3 179 69.3
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 1.1e-57 227.3 178 73.0
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 1.5e-57 226.9 188 68.6
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 1.5e-57 226.9 210 65.7
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 2.5e-57 226.1 187 69.0
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 7.3e-57 224.6 195 65.1
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 1.6e-56 223.4 209 62.7
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 2.1e-56 223.0 216 62.0
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 2.8e-56 222.6 175 68.6
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 3.6e-56 222.2 180 68.3
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 6.2e-56 221.5 173 69.9
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 6.2e-56 221.5 184 69.0
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 1.8e-55 219.9 240 55.0
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 3.1e-55 219.2 210 60.5
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 2.6e-54 216.1 172 68.6
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 2.6e-54 216.1 172 68.6
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 2.6e-54 216.1 172 68.6
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 2.6e-54 216.1 210 63.3
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 4.4e-54 215.3 178 68.5
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 5.8e-54 214.9 174 70.1
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 7.5e-54 214.5 175 67.4
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 7.5e-54 214.5 185 65.4
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 9.9e-54 214.2 200 59.5
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 9.9e-54 214.2 178 66.9
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 1.3e-53 213.8 235 59.1
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 2.9e-53 212.6 179 68.2
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 3.7e-53 212.2 208 58.2
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 1.4e-52 210.3 208 59.6
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 3.2e-52 209.1 178 66.3
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 3.2e-52 209.1 206 59.7
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 5.4e-52 208.4 209 61.2
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 2.1e-51 206.5 194 58.8
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 2.3e-50 203.0 208 57.7
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 1.1e-49 200.7 208 56.2
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 4.3e-49 198.7 202 57.4
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 5.6e-49 198.4 159 66.0
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 8.1e-48 194.5 205 57.1
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 1.1e-47 194.1 193 63.2
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 2.4e-47 193.0 169 62.7
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 3.1e-47 192.6 209 54.5
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 6.8e-47 191.4 175 61.7
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 2.6e-46 189.5 150 68.7
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 4.4e-46 188.7 237 49.8
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 9.9e-46 187.6 216 52.3
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 1.3e-45 187.2 186 60.2
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 1.7e-45 186.8 166 61.4
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 8.4e-45 184.5 210 57.6
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 1.4e-44 183.7 190 55.3
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 1.4e-44 183.7 190 55.3
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 2.4e-44 183.0 218 52.8
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 4.2e-44 182.2 180 56.7
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 5.4e-44 181.8 207 53.1
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 7.1e-44 181.4 173 58.4
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 9.2e-44 181.0 173 57.2
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 9.2e-44 181.0 186 55.9
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 1.2e-43 180.6 217 52.1
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 1.2e-43 180.6 173 56.6
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 1.2e-43 180.6 173 56.6
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 1.2e-43 180.6 217 52.1
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 1.2e-43 180.6 172 59.3
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 1.2e-43 180.6 193 56.0
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 2.1e-43 179.9 173 58.4
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 2.7e-43 179.5 184 57.6
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 3.5e-43 179.1 157 61.1
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 7.8e-43 177.9 173 58.4
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 6.6e-42 174.9 175 56.0
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 6.6e-42 174.9 189 53.4
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 6.6e-42 174.9 194 52.6
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 8.7e-42 174.5 193 53.4
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 1.1e-41 174.1 179 55.3
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 1.5e-41 173.7 195 52.8
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 3.6e-40 169.1 118 74.6
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 4.8e-40 168.7 171 55.6
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 6.2e-40 168.3 128 71.1
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 1.2e-38 164.1 137 67.9
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 1.5e-38 163.7 212 50.9
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 2.6e-38 162.9 182 53.8
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 7.6e-38 161.4 151 59.6
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 1.3e-37 160.6 140 67.9
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 2.2e-37 159.8 153 57.5
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 2.4e-36 156.4 177 52.5
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 3.2e-36 156.0 188 50.5
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 4.2e-36 155.6 187 54.0
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 1.6e-35 153.7 211 46.4
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 1.6e-35 153.7 128 64.8
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 2.7e-35 152.9 172 50.0
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 7.8e-35 151.4 147 55.8
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 5.1e-34 148.7 214 46.7
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 1.5e-33 147.1 142 61.3
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 2.1e-27 126.7 116 56.0
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 7.9e-27 124.8 192 44.3
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 3.0e-26 122.9 104 61.5
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 3.7e-24 115.9 174 44.8
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 3.4e-22 109.4 87 66.7
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 1.4e-20 104.0 90 63.3
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 2.5e-20 103.2 177 37.9
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 9.3e-20 101.3 154 41.6
CDE06G0942 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 1.2e-19 100.9 104 58.7
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 4.6e-19 99.0 66 75.8
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 1.3e-18 97.4 103 54.4
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 2.4e-15 86.7 128 41.4
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 2.9e-13 79.7 91 51.6
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 5.0e-13 79.0 65 63.1
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 4.2e-12 75.9 65 58.5
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 1.2e-11 74.3 138 36.2
MD12G1094800 Malus domestica HOM05D002282 ORTHO05D002403 3.9e-10 69.3 65 63.1
Cre12.g538500 Chlamydomonas reinhardtii HOM05D002282 ORTHO05D002403 2.2e-08 63.5 206 28.6
SMO361G0163 Selaginella moellendorffii HOM05D002282 ORTHO05D002403 2.2e-08 63.5 175 29.7
MCO14G074 Micromonas commoda HOM05D002282 ORTHO05D002403 3.1e-07 59.7 177 31.1
CBR_g57080 Chara braunii HOM05D002282 ORTHO05D002403 6.9e-07 58.5 192 30.7
ClCG06G004860 Citrullus lanatus HOM05D002282 ORTHO05D002403 1.2e-06 57.8 100 39.0
CiPaw.01G144200 Carya illinoinensis HOM05D002282 ORTHO05D002403 1.0e-05 54.7 138 30.4
Lj5A688G9 Lonicera japonica HOM05D002282 ORTHO05D002403 1.0e-05 54.7 85 36.5


User provided reference genes

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