Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 0.0e+00 1633.6 795 100.0
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 4.3e-243 845.1 799 55.9
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 9.1e-233 810.8 882 51.0
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 3.1e-225 785.8 902 47.8
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 7.0e-225 784.6 884 50.2
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 5.0e-223 778.5 859 48.3
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 6.5e-223 778.1 1110 41.7
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 2.5e-222 776.2 909 47.0
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 1.0e-212 744.2 917 46.1
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 5.7e-211 738.4 878 46.8
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 9.8e-211 737.6 872 45.6
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 1.7e-210 736.9 852 48.6
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 4.8e-210 735.3 903 46.3
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 6.5e-207 724.9 883 46.5
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 6.5e-207 724.9 885 47.0
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 1.6e-205 720.3 1110 40.3
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 2.1e-205 719.9 1109 39.9
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 3.6e-205 719.2 918 44.3
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 2.3e-204 716.5 1121 41.4
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 3.0e-204 716.1 853 47.6
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 4.9e-202 708.8 922 43.7
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 6.3e-202 708.4 869 48.6
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 4.1e-201 705.7 904 44.6
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.2e-200 704.1 922 43.6
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 1.6e-200 703.7 879 46.2
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 6.6e-199 698.4 898 43.9
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 2.1e-197 693.3 898 43.5
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 2.8e-197 693.0 896 43.4
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 6.1e-197 691.8 886 44.9
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 9.8e-195 684.5 855 44.6
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 3.7e-194 682.6 826 46.5
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 6.3e-194 681.8 880 45.1
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 3.2e-193 679.5 890 44.6
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 9.2e-193 677.9 890 44.7
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 3.9e-191 672.5 889 44.2
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 1.1e-190 671.0 1097 38.0
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 5.6e-190 668.7 880 44.5
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 2.3e-188 663.3 822 45.5
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 2.3e-188 663.3 849 45.2
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 3.1e-188 662.9 847 44.0
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 5.2e-188 662.1 847 44.6
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 2.6e-187 659.8 915 42.0
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 3.7e-186 656.0 837 44.1
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 1.5e-182 644.0 923 40.5
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 9.5e-182 641.3 865 42.0
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 9.5e-182 641.3 838 44.2
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 9.5e-182 641.3 847 43.2
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 9.5e-182 641.3 849 43.0
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 6.8e-180 635.2 782 47.2
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 2.0e-179 633.6 1098 36.5
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 2.0e-179 633.6 850 42.8
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 4.4e-179 632.5 490 63.9
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 1.1e-177 627.9 873 41.2
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 1.9e-177 627.1 782 45.0
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 3.2e-177 626.3 858 43.5
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 9.2e-177 624.8 898 41.4
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 3.9e-175 619.4 900 41.0
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 5.1e-175 619.0 871 41.7
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 7.3e-174 615.1 897 41.2
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 7.3e-174 615.1 897 41.4
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 1.8e-172 610.5 868 42.3
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 6.8e-172 608.6 898 41.0
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 6.8e-172 608.6 898 41.1
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 8.9e-172 608.2 840 42.7
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 1.5e-171 607.4 832 43.0
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 4.4e-171 605.9 899 40.3
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 7.6e-171 605.1 897 41.1
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 1.5e-166 590.9 910 39.9
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 1.4e-164 584.3 848 40.9
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 2.0e-163 580.5 888 40.8
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 4.4e-163 579.3 836 42.6
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 5.8e-163 578.9 848 40.4
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 3.2e-161 573.2 588 52.6
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 6.0e-160 568.9 1054 35.3
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 3.9e-159 566.2 1078 34.3
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 6.6e-159 565.5 758 43.9
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 1.6e-157 560.8 896 39.0
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 2.0e-155 553.9 629 47.9
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 1.9e-153 547.4 847 40.4
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 8.7e-151 538.5 732 42.8
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 1.6e-149 534.3 751 43.7
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 1.2e-144 518.1 642 45.8
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 2.8e-141 506.9 659 42.6
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 1.1e-140 505.0 902 36.3
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 4.0e-140 503.1 784 39.9
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 3.2e-137 493.4 1062 32.9
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 2.3e-135 487.3 786 38.9
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 5.7e-134 482.6 629 42.8
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 3.1e-132 476.9 735 39.9
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 6.9e-132 475.7 962 32.3
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.3e-130 471.5 1013 31.3
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 1.5e-123 448.0 916 33.5
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 4.5e-115 419.9 957 30.3
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 4.1e-108 396.7 557 41.5
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 1.8e-100 371.3 502 41.6
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 1.1e-97 362.1 636 36.9
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 1.9e-97 361.3 363 52.6
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 2.5e-97 360.9 541 39.4
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 1.2e-96 358.6 593 37.6
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 1.4e-92 345.1 539 37.7
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 1.2e-91 342.0 390 48.7
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 1.3e-90 338.6 941 29.8
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 1.9e-89 334.7 707 34.7
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 4.0e-87 327.0 956 27.8
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 4.0e-87 327.0 489 41.5
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 1.2e-80 305.4 504 38.3
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 5.6e-73 280.0 934 26.3
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 1.8e-71 275.0 368 44.3
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 4.4e-70 270.4 935 25.2
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 1.7e-69 268.5 156 81.4
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 1.0e-66 259.2 183 70.5
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 1.0e-66 259.2 156 78.8
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 7.8e-59 233.0 553 30.7
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.0e-58 232.6 156 67.3
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 5.1e-58 230.3 479 33.6
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 5.6e-57 226.9 166 65.7
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 1.4e-55 222.2 171 63.7
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 6.8e-55 219.9 300 46.0
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 2.2e-53 214.9 368 37.8
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 6.6e-50 203.4 160 61.9
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 9.6e-49 199.5 155 60.0
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 2.2e-45 188.3 266 41.4
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 6.4e-45 186.8 917 23.8
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 9.3e-36 156.4 302 32.8
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 1.1e-31 142.9 110 66.4
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 1.4e-31 142.5 149 50.3
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 1.8e-31 142.1 109 60.6
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 1.1e-28 132.9 128 46.9
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 7.9e-27 126.7 214 34.6
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 1.6e-24 119.0 84 63.1
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 2.2e-21 108.6 89 56.2
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 1.9e-20 105.5 140 47.1
Medtr1g085950 Medicago truncatula HOM05D005399 ORTHO05D006347 1.3e-18 99.4 83 57.8
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 4.2e-12 77.8 156 34.6
MBI17_g10900_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 8.2e-08 63.5 89 41.6
SHI24230 Sapria himalayana HOM05D005399 ORTHO05D006347 2.0e-06 58.9 42 71.4


User provided reference genes

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