Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 0.0e+00 2624.0 1339 100.0
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 0.0e+00 1462.6 1353 60.5
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 0.0e+00 1367.4 1355 57.9
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 0.0e+00 1352.8 1451 54.0
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 0.0e+00 1258.8 1368 53.9
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 0.0e+00 1242.3 1354 53.5
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 0.0e+00 1224.2 1351 53.4
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 0.0e+00 1218.0 1196 56.5
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 0.0e+00 1211.4 1186 57.6
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 0.0e+00 1199.5 1373 52.1
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 0.0e+00 1177.2 1391 50.9
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 0.0e+00 1176.8 1386 50.0
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 0.0e+00 1157.5 1369 50.7
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 0.0e+00 1152.1 1388 50.1
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 0.0e+00 1148.7 1381 50.3
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 0.0e+00 1142.5 1220 53.9
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 0.0e+00 1132.5 1426 48.5
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 0.0e+00 1129.0 1345 49.7
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 0.0e+00 1122.1 1389 49.7
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 0.0e+00 1118.2 1401 48.5
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1105.5 1394 48.4
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 0.0e+00 1105.1 1278 50.6
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 0.0e+00 1105.1 1196 53.3
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 0.0e+00 1104.7 1343 49.2
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 0.0e+00 1104.4 1367 48.5
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 0.0e+00 1091.6 1346 48.5
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 0.0e+00 1085.1 1226 51.9
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 0.0e+00 1079.7 1364 49.0
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 0.0e+00 1078.9 1206 52.0
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 4.6e-311 1071.6 1350 49.2
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 8.2e-311 1070.8 1356 48.7
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 2.4e-310 1069.3 1383 47.7
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 1.0e-308 1063.9 1355 48.0
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 1.9e-307 1059.7 1356 47.1
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 5.5e-307 1058.1 1358 47.5
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 7.2e-307 1057.7 1408 47.1
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 2.0e-304 1049.7 1362 47.2
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 7.4e-304 1047.7 1377 46.7
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 7.4e-304 1047.7 1369 47.6
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 1.3e-303 1047.0 1348 47.0
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 4.8e-303 1045.0 1396 46.5
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.4e-302 1043.5 1362 46.9
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 1.4e-302 1043.5 1231 50.2
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 4.1e-302 1042.0 1362 47.0
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 5.3e-302 1041.6 1544 43.8
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 6.9e-302 1041.2 1350 47.9
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 8.5e-300 1034.2 1057 55.0
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 1.1e-299 1033.9 1374 46.7
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 2.5e-299 1032.7 1209 50.3
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 3.9e-297 1025.4 1377 46.6
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 7.0e-294 1014.6 1357 46.1
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 7.2e-291 1004.6 1233 49.5
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 9.4e-291 1004.2 1267 48.4
CSS0002454 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 3.6e-290 1002.3 1074 54.5
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 1.0e-289 1000.7 1369 46.0
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 2.3e-289 999.6 1378 45.9
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 8.8e-289 997.7 1249 48.3
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 2.0e-288 996.5 1046 53.3
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 4.4e-288 995.3 1109 51.9
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 5.7e-288 995.0 1399 44.6
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 4.8e-287 991.9 1355 45.6
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 1.8e-286 989.9 1373 45.1
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 2.4e-286 989.6 1230 48.5
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 4.2e-283 978.8 1411 43.6
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 1.2e-282 977.2 1318 45.9
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 8.8e-281 971.1 1341 44.8
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 2.0e-280 969.9 1350 45.0
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 2.8e-279 966.1 1351 44.6
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 5.4e-278 961.8 1344 45.3
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 5.9e-277 958.4 1204 47.3
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 7.7e-277 958.0 1215 47.7
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 1.0e-276 957.6 1162 48.0
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.3e-276 957.2 1263 46.7
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 5.0e-276 955.3 1346 44.7
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 6.5e-276 954.9 1349 44.8
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 6.5e-276 954.9 1208 47.5
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 1.9e-275 953.4 1079 51.3
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 1.2e-274 950.7 1344 44.0
Lj3C915G3 Lonicera japonica HOM05D005400 ORTHO05D006668 1.0e-273 947.6 1232 49.5
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 1.4e-273 947.2 1344 44.0
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 3.4e-272 942.6 1339 44.3
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 4.4e-272 942.2 1341 43.9
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 4.4e-272 942.2 1343 44.5
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 7.5e-272 941.4 1395 43.6
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 2.8e-271 939.5 1341 43.9
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 2.8e-271 939.5 1341 43.9
Prupe.2G304900 Prunus persica HOM05D005400 ORTHO05D006668 2.7e-269 932.9 1257 46.6
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 1.9e-259 900.2 1354 43.1
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 1.2e-253 880.9 1044 48.4
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 5.2e-241 839.0 1052 48.1
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 2.6e-240 836.6 1259 43.8
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 2.2e-239 833.6 1321 42.5
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 1.5e-235 820.8 1228 43.3
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 5.2e-233 812.4 1271 42.0
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 2.0e-232 810.4 1256 41.5
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 6.4e-231 805.4 1401 40.1
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 4.2e-230 802.7 1350 39.8
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 7.8e-229 798.5 1320 40.2
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 2.3e-228 797.0 1388 40.0
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 2.1e-213 747.3 1239 39.1
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 6.0e-213 745.7 618 62.8
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 2.0e-200 704.1 592 61.8
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 2.5e-198 697.2 1012 43.4
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 7.4e-195 685.6 1357 36.6
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 1.5e-192 677.9 580 60.2
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 3.8e-175 620.2 1076 37.2
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 1.1e-150 538.9 1238 32.8
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 4.9e-138 496.9 1280 30.2
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 2.1e-133 481.5 772 40.0
PGSC0003DMG400006588 Solanum tuberosum HOM05D005400 ORTHO05D006668 4.1e-129 467.2 694 45.0
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 9.9e-99 366.3 1042 28.6
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 6.1e-80 303.9 244 63.5
QL09p011899 Quercus lobata HOM05D005400 ORTHO05D006668 5.2e-63 247.7 287 49.8
GSVIVG01028763001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.3e-55 222.2 176 63.6
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 1.5e-49 203.0 265 42.6
RcHm_v2.0_Chr5g0072581 Rosa chinensis HOM05D005400 ORTHO05D006668 2.6e-46 192.2 240 46.2
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 5.7e-46 191.0 138 68.8
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 7.0e-36 157.5 647 25.2
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 3.1e-31 142.1 105 61.9
GSVIVG01028765001 Vitis vinifera HOM05D005400 ORTHO05D006668 6.8e-31 141.0 119 60.5
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 4.9e-29 134.8 122 59.0
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 3.2e-28 132.1 236 34.3
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.7e-26 126.3 107 59.8
SHI13743 Sapria himalayana HOM05D005400 ORTHO05D006668 4.3e-25 121.7 81 66.7
Lsat_1_v5_gn_8_88601 Lactuca sativa HOM05D005400 ORTHO05D006668 1.5e-22 113.2 129 49.6
QL09p011903 Quercus lobata HOM05D005400 ORTHO05D006668 1.1e-20 107.1 134 47.0
FAN06G3414 Fragaria x ananassa HOM05D005400 ORTHO05D006668 3.5e-19 102.1 120 47.5
FAN06G1858 Fragaria x ananassa HOM05D005400 ORTHO05D006668 2.3e-18 99.4 125 46.4
arahy.Tifrunner.gnm1.ann1.58WBAP Arachis hypogaea HOM05D005400 ORTHO05D006668 8.6e-18 97.4 117 47.0
GSVIVG01028761001 Vitis vinifera HOM05D005400 ORTHO05D006668 2.1e-16 92.8 390 29.0
Dinv07570 Davidia involucrata HOM05D000001 ORTHO05D000003 1.1e-12 80.5 77 58.4
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 2.7e-11 75.9 83 47.0
SHI13741 Sapria himalayana HOM05D005400 ORTHO05D006668 2.3e-10 72.8 92 45.7
Glyma.14G176200 Glycine max HOM05D005400 ORTHO05D006668 5.1e-10 71.6 159 33.3
Glyma.03G109600 Glycine max HOM05D005400 ORTHO05D006668 7.3e-09 67.8 69 47.8
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 2.4e-07 62.8 54 53.7
HanXRQChr01g0002611 Helianthus annuus HOM05D005400 ORTHO05D006668 1.2e-06 60.5 104 40.4
VMungo0464G0969 Vigna mungo HOM05D005400 ORTHO05D006668 2.6e-06 59.3 70 42.9


User provided reference genes

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