Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 8.3e-85 317.0 160 100.0
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 7.8e-51 204.1 163 63.8
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 1.7e-50 203.0 163 62.6
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 2.5e-49 199.1 163 62.6
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 7.3e-49 197.6 163 61.3
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 9.5e-49 197.2 161 62.1
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.1e-47 193.7 163 60.1
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 1.4e-47 193.4 164 62.2
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 2.2e-45 186.0 160 56.9
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 2.9e-45 185.7 162 61.7
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 2.9e-45 185.7 165 59.4
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 7.1e-44 181.0 160 57.5
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 9.2e-44 180.6 160 57.5
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 1.6e-43 179.9 169 56.8
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 1.6e-43 179.9 161 56.5
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 2.7e-43 179.1 165 57.6
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 4.6e-43 178.3 160 57.5
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 7.8e-43 177.6 161 58.4
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.0e-42 177.2 162 56.2
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 1.3e-42 176.8 162 59.3
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 1.3e-42 176.8 166 57.2
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 1.3e-42 176.8 168 56.0
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 1.3e-42 176.8 165 55.8
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 3.0e-42 175.6 160 56.9
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 3.0e-42 175.6 162 56.8
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 3.0e-42 175.6 164 56.7
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 3.9e-42 175.3 161 56.5
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 5.1e-42 174.9 160 55.6
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 3.3e-41 172.2 161 54.0
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 7.3e-41 171.0 160 56.2
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 2.8e-40 169.1 163 55.8
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 2.8e-40 169.1 163 55.8
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 2.8e-40 169.1 163 53.4
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 4.7e-40 168.3 163 55.2
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 6.2e-40 167.9 200 50.0
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 8.1e-40 167.5 165 53.9
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 1.4e-39 166.8 164 52.4
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 1.8e-39 166.4 171 51.5
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 3.1e-39 165.6 163 55.8
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 6.9e-39 164.5 161 50.9
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 9.0e-39 164.1 156 54.5
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 1.2e-38 163.7 161 55.3
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 3.4e-38 162.2 161 55.9
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 4.4e-38 161.8 164 50.6
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 9.9e-38 160.6 162 52.5
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 9.9e-38 160.6 162 56.2
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 1.3e-37 160.2 163 50.9
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 1.3e-37 160.2 159 56.0
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 1.7e-37 159.8 162 52.5
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 2.9e-37 159.1 162 52.5
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 3.8e-37 158.7 198 46.0
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 8.4e-37 157.5 163 51.5
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 8.4e-37 157.5 160 53.1
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 8.4e-37 157.5 160 50.6
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.1e-36 157.1 171 50.9
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.1e-36 157.1 170 50.6
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.9e-36 156.4 164 50.0
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 2.4e-36 156.0 170 50.0
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 5.4e-36 154.8 161 53.4
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 7.1e-36 154.5 156 50.6
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 7.1e-36 154.5 157 51.6
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 1.6e-35 153.3 164 50.0
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 2.1e-35 152.9 156 50.0
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 2.1e-35 152.9 163 49.7
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 2.1e-35 152.9 116 62.9
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 2.7e-35 152.5 165 50.3
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 3.5e-35 152.1 158 50.6
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 3.5e-35 152.1 158 50.6
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 3.5e-35 152.1 156 50.0
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 4.6e-35 151.8 163 50.3
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 6.0e-35 151.4 163 54.6
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 6.0e-35 151.4 162 51.2
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 6.0e-35 151.4 160 50.0
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 7.8e-35 151.0 173 49.1
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 7.8e-35 151.0 160 55.0
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.0e-34 150.6 159 52.2
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 1.0e-34 150.6 158 51.9
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.0e-34 150.6 160 50.6
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 1.7e-34 149.8 161 49.1
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 3.9e-34 148.7 161 48.4
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 3.9e-34 148.7 162 50.6
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 6.6e-34 147.9 156 47.4
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 6.6e-34 147.9 244 39.3
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 1.1e-33 147.1 156 48.7
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 1.1e-33 147.1 163 50.3
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 2.5e-33 146.0 162 51.9
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 4.3e-33 145.2 166 51.2
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 5.6e-33 144.8 156 48.1
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 7.3e-33 144.4 161 48.4
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 2.1e-32 142.9 157 50.3
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 2.8e-32 142.5 161 49.7
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 2.8e-32 142.5 158 48.1
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 8.1e-32 141.0 228 38.6
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 8.1e-32 141.0 160 45.6
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 8.1e-32 141.0 160 45.6
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 2.4e-31 139.4 159 49.7
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 2.4e-31 139.4 155 47.1
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 9.0e-31 137.5 162 47.5
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 9.0e-31 137.5 146 54.8
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 1.2e-30 137.1 159 50.9
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 1.2e-30 137.1 267 35.6
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 1.5e-30 136.7 114 61.4
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 1.5e-30 136.7 162 48.1
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 2.2e-29 132.9 106 61.3
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 2.2e-29 132.9 192 41.7
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 2.2e-29 132.9 193 41.5
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 2.9e-29 132.5 138 52.2
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 8.4e-29 131.0 155 47.7
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 1.1e-28 130.6 167 43.7
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 9.3e-28 127.5 158 46.2
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 1.6e-27 126.7 157 45.9
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 2.1e-27 126.3 162 45.7
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 2.7e-27 125.9 159 45.9
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 1.3e-26 123.6 222 37.4
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 1.3e-26 123.6 178 39.9
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 1.1e-25 120.6 162 45.1
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 1.9e-25 119.8 172 41.9
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 2.1e-24 116.3 168 41.7
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 2.8e-24 115.9 159 47.2
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 2.8e-24 115.9 157 44.6
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 2.8e-24 115.9 154 46.1
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 4.8e-24 115.2 156 45.5
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 4.8e-24 115.2 156 45.5
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 4.8e-24 115.2 170 42.9
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 6.2e-24 114.8 81 67.9
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 1.1e-23 114.0 156 45.5
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 1.1e-23 114.0 156 46.2
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 2.4e-23 112.8 155 45.2
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 2.4e-23 112.8 155 45.2
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 5.3e-23 111.7 153 46.4
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 5.3e-23 111.7 153 46.4
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 6.9e-23 111.3 156 44.9
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 9.0e-23 110.9 81 64.2
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 1.2e-22 110.5 153 46.4
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 3.4e-22 109.0 150 46.0
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 7.6e-22 107.8 150 45.3
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 7.6e-22 107.8 150 46.0
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 2.2e-21 106.3 153 45.1
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 3.8e-21 105.5 81 60.5
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 6.4e-21 104.8 100 55.0
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 8.4e-21 104.4 157 41.4
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 2.5e-20 102.8 164 40.2
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 1.8e-18 96.7 158 37.3
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 6.7e-18 94.7 109 48.6
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 1.1e-15 87.4 74 60.8
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 4.0e-15 85.5 79 55.7
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 6.9e-15 84.7 92 46.7
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 5.8e-14 81.6 77 51.9
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 5.5e-12 75.1 104 41.3
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 1.6e-11 73.6 100 39.0
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 6.1e-11 71.6 81 42.0
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 5.1e-10 68.6 88 47.7
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 3.3e-09 65.9 149 35.6
Sabra19G0094000 Salix brachista HOM05D004587 ORTHO05D005512 7.4e-09 64.7 42 69.0
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 1.3e-08 63.9 82 46.3
Actinidia03382 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.8e-07 60.1 44 63.6
Cfa012421 Carpinus fangiana HOM05D004587 ORTHO05D005512 1.5e-06 57.0 34 73.5
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.0e-06 56.6 78 43.6
Haze_08255 Corylus avellana HOM05D004587 ORTHO05D005512 4.5e-06 55.5 86 37.2


User provided reference genes

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