Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 7.3e-57 223.8 123 100.0
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 4.9e-37 157.9 127 70.1
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 1.9e-36 156.0 126 70.6
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 5.5e-36 154.5 124 70.2
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 3.5e-35 151.8 120 70.8
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 6.0e-35 151.0 125 71.2
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 6.0e-35 151.0 127 70.9
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 7.9e-35 150.6 105 77.1
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 7.9e-35 150.6 126 68.3
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 1.3e-34 149.8 126 69.0
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.8e-34 149.4 126 67.5
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 1.8e-34 149.4 123 69.1
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 2.3e-34 149.1 119 73.1
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 3.0e-34 148.7 123 65.9
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 5.1e-34 147.9 125 70.4
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 5.1e-34 147.9 127 69.3
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 5.1e-34 147.9 129 65.9
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 6.7e-34 147.5 120 71.7
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 6.7e-34 147.5 125 70.4
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 8.7e-34 147.1 123 67.5
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 1.1e-33 146.7 120 71.7
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 1.5e-33 146.4 124 67.7
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.5e-33 146.4 125 70.4
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.5e-33 146.4 125 69.6
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 1.5e-33 146.4 128 68.0
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 1.9e-33 146.0 124 71.8
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.9e-33 146.0 128 63.3
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 1.9e-33 146.0 125 70.4
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 1.9e-33 146.0 128 68.0
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.5e-33 145.6 123 67.5
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 2.5e-33 145.6 126 69.0
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 3.3e-33 145.2 122 63.1
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 3.3e-33 145.2 126 66.7
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 3.3e-33 145.2 118 67.8
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 3.3e-33 145.2 120 70.0
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 4.3e-33 144.8 127 67.7
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 5.6e-33 144.4 123 67.5
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 9.6e-33 143.7 127 63.8
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 9.6e-33 143.7 124 65.3
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.6e-33 143.7 124 65.3
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.6e-33 143.7 123 67.5
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 9.6e-33 143.7 120 68.3
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 9.6e-33 143.7 122 68.9
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 1.3e-32 143.3 127 66.9
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.3e-32 143.3 125 68.8
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 1.6e-32 142.9 112 68.8
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 1.6e-32 142.9 112 68.8
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 1.6e-32 142.9 121 67.8
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.6e-32 142.9 124 65.3
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 2.1e-32 142.5 126 63.5
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 2.1e-32 142.5 126 67.5
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.1e-32 142.5 124 65.3
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 2.1e-32 142.5 126 66.7
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 2.8e-32 142.1 125 65.6
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 2.8e-32 142.1 123 66.7
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.8e-32 142.1 123 65.9
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.8e-32 142.1 123 66.7
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.8e-32 142.1 127 69.3
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 3.7e-32 141.7 123 65.9
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 3.7e-32 141.7 124 64.5
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.8e-32 141.4 123 65.9
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.8e-32 141.4 123 65.9
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 4.8e-32 141.4 128 68.0
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 4.8e-32 141.4 123 69.1
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 8.2e-32 140.6 127 68.5
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 8.2e-32 140.6 126 62.7
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 1.1e-31 140.2 124 66.9
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 1.1e-31 140.2 124 66.9
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.4e-31 139.8 123 65.0
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.4e-31 139.8 123 65.0
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 2.4e-31 139.0 120 65.0
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 3.1e-31 138.7 125 67.2
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.1e-31 138.7 123 65.0
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 3.1e-31 138.7 125 65.6
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 3.1e-31 138.7 124 70.2
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 4.0e-31 138.3 123 65.0
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 4.0e-31 138.3 124 70.2
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 4.0e-31 138.3 128 67.2
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 5.3e-31 137.9 127 67.7
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 5.3e-31 137.9 123 62.6
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 6.9e-31 137.5 124 69.4
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 9.0e-31 137.1 125 63.2
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 1.2e-30 136.7 126 64.3
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 3.4e-30 135.2 111 67.6
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 4.5e-30 134.8 126 66.7
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 5.8e-30 134.4 126 64.3
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 5.8e-30 134.4 123 61.8
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 7.6e-30 134.0 125 64.0
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 7.6e-30 134.0 122 64.8
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 1.0e-29 133.7 104 68.3
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 1.3e-29 133.3 129 63.6
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 1.7e-29 132.9 124 61.3
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 2.2e-29 132.5 125 62.4
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 2.2e-29 132.5 121 62.8
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 2.2e-29 132.5 119 63.0
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 2.9e-29 132.1 122 63.1
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 3.8e-29 131.7 127 63.0
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 3.8e-29 131.7 122 63.1
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 8.4e-29 130.6 120 65.0
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 8.4e-29 130.6 122 63.9
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 1.4e-28 129.8 121 63.6
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 1.9e-28 129.4 122 62.3
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 2.5e-28 129.0 123 62.6
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 3.2e-28 128.6 94 73.4
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 3.2e-28 128.6 127 59.8
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 3.2e-28 128.6 127 61.4
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 5.5e-28 127.9 124 59.7
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 5.5e-28 127.9 126 61.1
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.1e-28 127.5 95 73.7
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 9.3e-28 127.1 122 62.3
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 1.2e-27 126.7 101 66.3
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 2.1e-27 125.9 124 60.5
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 6.0e-27 124.4 126 56.3
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 6.0e-27 124.4 127 57.5
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 1.0e-26 123.6 123 60.2
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 1.8e-26 122.9 123 56.1
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 2.3e-26 122.5 128 56.2
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 3.9e-26 121.7 124 60.5
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 3.9e-26 121.7 116 59.5
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 6.7e-26 120.9 97 66.0
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 6.7e-26 120.9 128 58.6
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 6.7e-26 120.9 128 58.6
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 6.7e-26 120.9 128 58.6
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 6.7e-26 120.9 128 58.6
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 6.7e-26 120.9 128 58.6
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 8.7e-26 120.6 127 56.7
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 3.3e-25 118.6 126 56.3
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 3.3e-25 118.6 131 56.5
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 5.7e-25 117.9 128 57.8
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 7.4e-25 117.5 114 58.8
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 1.3e-24 116.7 125 56.8
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 1.6e-24 116.3 124 57.3
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 2.2e-24 115.9 124 57.3
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 2.2e-24 115.9 115 60.0
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 2.8e-24 115.5 128 57.0
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 3.7e-24 115.2 128 58.6
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 4.8e-24 114.8 124 56.5
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 4.8e-24 114.8 124 58.9
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 1.8e-23 112.8 108 61.1
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 5.3e-23 111.3 123 57.7
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 6.9e-23 110.9 124 58.1
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 6.9e-23 110.9 124 57.3
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 6.9e-23 110.9 138 53.6
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 9.0e-23 110.5 130 55.4
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 1.5e-22 109.8 125 54.4
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 4.5e-22 108.2 124 54.8
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 2.5e-20 102.4 127 48.8
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 3.6e-19 98.6 130 55.4
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.8e-18 96.3 121 47.1
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 1.8e-18 96.3 123 51.2
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 1.8e-18 96.3 112 50.0
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.9e-17 92.8 106 56.6
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 9.7e-17 90.5 122 50.8
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 4.8e-16 88.2 89 53.9
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 1.2e-14 83.6 77 67.5
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 1.5e-14 83.2 123 43.9
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 1.5e-14 83.2 81 61.7
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 2.6e-14 82.4 52 84.6
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 5.9e-14 81.3 73 63.0
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 2.5e-12 75.9 103 46.6
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 1.2e-11 73.6 129 42.6
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 3.6e-11 72.0 51 74.5
Psat3g122680 Pisum sativum HOM05D004388 ORTHO05D005106 7.4e-09 64.3 108 42.6
CAN.G322.45 Capsicum annuum HOM05D000224 ORTHO05D000337 2.6e-06 55.8 67 50.7


User provided reference genes

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