Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 2.8e-68 261.9 140 100.0
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 5.8e-58 227.6 140 86.4
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 8.3e-57 223.8 140 84.3
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 1.9e-56 222.6 140 83.6
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.2e-56 221.9 140 85.7
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 5.4e-56 221.1 141 85.8
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 5.4e-56 221.1 140 85.7
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 7.1e-56 220.7 140 85.0
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 7.1e-56 220.7 140 82.1
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 9.2e-56 220.3 140 85.0
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 1.2e-55 219.9 140 84.3
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 2.1e-55 219.2 140 82.9
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 2.1e-55 219.2 140 84.3
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 2.1e-55 219.2 140 82.9
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.7e-55 218.8 140 84.3
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 2.7e-55 218.8 140 84.3
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 3.5e-55 218.4 140 82.9
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 3.5e-55 218.4 140 84.3
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 3.5e-55 218.4 141 84.4
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 3.5e-55 218.4 140 84.3
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 6.0e-55 217.6 140 84.3
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 6.0e-55 217.6 140 84.3
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 6.0e-55 217.6 140 84.3
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 6.0e-55 217.6 140 83.6
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 7.8e-55 217.2 140 83.6
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 1.0e-54 216.9 140 82.9
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.0e-54 216.9 140 83.6
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 1.0e-54 216.9 140 83.6
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 1.7e-54 216.1 140 79.3
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.3e-54 215.7 140 83.6
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 3.0e-54 215.3 140 82.9
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 3.9e-54 214.9 140 83.6
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 3.9e-54 214.9 140 82.1
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 5.1e-54 214.5 143 78.3
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 8.6e-54 213.8 140 82.9
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.1e-53 213.4 140 82.1
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.1e-53 213.4 140 82.9
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 1.5e-53 213.0 140 79.3
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 1.5e-53 213.0 140 82.9
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 1.5e-53 213.0 140 82.9
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 1.5e-53 213.0 140 82.1
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 1.9e-53 212.6 140 80.0
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 2.5e-53 212.2 139 81.3
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 3.3e-53 211.8 140 79.3
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 5.6e-53 211.1 140 79.3
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 5.6e-53 211.1 142 80.3
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 5.6e-53 211.1 140 78.6
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 1.2e-52 209.9 141 79.4
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 1.2e-52 209.9 140 82.1
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 1.6e-52 209.5 143 81.1
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.6e-52 209.5 140 79.3
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 2.8e-52 208.8 139 79.9
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 3.6e-52 208.4 147 76.9
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 3.6e-52 208.4 140 80.0
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 4.7e-52 208.0 143 78.3
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 8.1e-52 207.2 139 79.1
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 1.1e-51 206.8 143 77.6
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 1.1e-51 206.8 140 79.3
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 1.8e-51 206.1 140 80.0
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 1.8e-51 206.1 140 80.0
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 2.3e-51 205.7 140 80.0
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 3.1e-51 205.3 148 77.7
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 4.0e-51 204.9 140 79.3
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 5.2e-51 204.5 140 77.9
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 6.8e-51 204.1 141 78.0
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 8.9e-51 203.8 164 70.7
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 8.9e-51 203.8 139 78.4
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 1.2e-50 203.4 140 77.1
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 1.5e-50 203.0 140 80.0
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 2.0e-50 202.6 140 77.1
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.0e-50 202.6 140 77.1
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 2.0e-50 202.6 141 75.9
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 2.0e-50 202.6 140 80.0
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 2.6e-50 202.2 140 77.1
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 2.6e-50 202.2 139 78.4
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 3.4e-50 201.8 140 76.4
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 3.4e-50 201.8 139 77.7
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 4.4e-50 201.4 149 73.8
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 4.4e-50 201.4 139 77.7
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 5.8e-50 201.1 140 76.4
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 5.8e-50 201.1 160 69.4
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 7.6e-50 200.7 151 73.5
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 7.6e-50 200.7 151 73.5
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 7.6e-50 200.7 140 78.6
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 1.3e-49 199.9 139 77.7
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.4e-49 197.6 140 75.7
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 2.4e-48 195.7 141 77.3
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.4e-48 195.7 144 73.6
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 3.2e-48 195.3 140 73.6
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 4.1e-48 194.9 140 75.0
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 7.1e-48 194.1 140 75.7
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 9.2e-48 193.7 154 71.4
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.2e-47 193.4 144 72.2
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 2.1e-47 192.6 140 75.0
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 2.7e-47 192.2 146 71.9
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 3.5e-47 191.8 152 69.7
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 6.0e-47 191.0 148 71.6
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 7.8e-47 190.7 155 68.4
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 7.8e-47 190.7 155 68.4
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.0e-46 190.3 140 74.3
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 1.0e-46 190.3 140 74.3
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 5.1e-46 188.0 176 61.4
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 9.6e-45 183.7 168 61.9
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 9.6e-45 183.7 174 61.5
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 1.2e-44 183.3 136 72.1
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 1.2e-44 183.3 97 99.0
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 5.2e-43 177.9 140 70.0
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 2.0e-42 176.0 114 83.3
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 3.4e-42 175.3 138 71.0
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 4.4e-42 174.9 114 83.3
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 1.3e-41 173.3 136 70.6
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.9e-40 169.5 138 65.9
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 7.8e-39 164.1 119 76.5
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 3.0e-38 162.2 116 75.0
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 6.6e-38 161.0 140 65.0
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 1.1e-37 160.2 129 73.6
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 1.9e-37 159.5 140 60.0
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 1.9e-37 159.5 114 76.3
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.3e-36 156.8 168 54.8
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.4e-35 152.5 117 72.6
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 6.9e-35 151.0 136 62.5
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 2.0e-34 149.4 167 56.3
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 3.4e-34 148.7 131 64.9
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 1.3e-33 146.7 136 62.5
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 2.2e-33 146.0 114 71.1
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 4.9e-33 144.8 139 58.3
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 7.9e-31 137.5 110 67.3
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 8.7e-30 134.0 139 61.2
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 5.6e-29 131.3 158 51.9
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.3e-28 130.2 81 88.9
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.8e-28 129.0 120 61.7
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 6.2e-28 127.9 137 55.5
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 6.2e-28 127.9 80 87.5
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.1e-27 125.6 80 86.2
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 6.9e-27 124.4 80 85.0
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 9.0e-27 124.0 138 52.2
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 5.8e-26 121.3 116 59.5
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 5.8e-26 121.3 77 87.0
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 9.9e-26 120.6 76 88.2
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 1.4e-24 116.7 86 72.1
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 5.5e-24 114.8 133 52.6
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 7.1e-24 114.4 69 88.4
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 7.1e-24 114.4 86 70.9
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.2e-23 113.6 69 84.1
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.9e-17 91.7 71 67.6
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 8.4e-17 90.9 59 78.0
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 8.4e-17 90.9 69 73.9
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 3.2e-16 89.0 104 55.8
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 2.1e-15 86.3 57 82.5
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 4.6e-15 85.1 71 63.4
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 1.8e-14 83.2 72 63.9
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 1.8e-14 83.2 72 63.9
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 5.1e-14 81.6 77 59.7
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 2.8e-12 75.9 133 37.6
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 2.9e-09 65.9 110 44.5
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 2.9e-09 65.9 110 44.5
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 6.5e-09 64.7 41 73.2
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 1.9e-08 63.2 48 66.7
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 2.5e-08 62.8 50 64.0
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 4.2e-08 62.0 50 64.0
BcaB02g10679 Brassica carinata HOM05D004301 ORTHO05D005124 6.7e-06 54.7 44 68.2


User provided reference genes

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