Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu031694.1 Olea europaea HOM05D004370 ORTHO05D005084 1.8e-132 476.1 271 100.0
Oeu043883.1 Olea europaea HOM05D004370 ORTHO05D005084 6.3e-93 344.7 280 76.8
Sopen01g038350 Solanum pennellii HOM05D004370 ORTHO05D005084 6.1e-80 301.6 304 66.1
Solyc01g094540.4 Solanum lycopersicum HOM05D004370 ORTHO05D005084 5.2e-79 298.5 303 65.7
PGSC0003DMG400021647 Solanum tuberosum HOM05D004370 ORTHO05D005084 4.4e-78 295.4 276 72.5
CAN.G78.61 Capsicum annuum HOM05D004370 ORTHO05D005084 1.3e-77 293.9 287 67.9
Sopen05g028310 Solanum pennellii HOM05D004370 ORTHO05D005084 7.0e-76 288.1 276 72.8
Solyc05g049950.3 Solanum lycopersicum HOM05D004370 ORTHO05D005084 9.1e-76 287.7 275 72.7
Medtr5g092010 Medicago truncatula HOM05D004370 ORTHO05D005084 5.9e-75 285.0 290 66.6
ECA238G0265 Erigeron canadensis HOM05D004370 ORTHO05D005084 1.1e-73 280.8 302 61.6
FAN04G0169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 1.1e-73 280.8 276 65.9
SGA_v2.0_scaffold163G38072 Striga asiatica HOM05D004370 ORTHO05D005084 9.4e-73 277.7 271 66.8
MSTRG.1661 Avicennia marina HOM05D004370 ORTHO05D005084 2.1e-72 276.6 280 67.1
FAN08G0371 Fragaria x ananassa HOM05D004370 ORTHO05D005084 6.1e-72 275.0 276 62.3
SalBow1G7578 Salvia bowleyana HOM05D004370 ORTHO05D005084 1.4e-71 273.9 160 87.5
Gohir.D10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 2.3e-71 273.1 293 64.2
Aqoxy1G00534 Aquilegia oxysepala HOM05D004370 ORTHO05D005084 3.0e-71 272.7 217 77.0
Cpa.g.sc285.3 Carica papaya HOM05D004370 ORTHO05D005084 4.0e-71 272.3 307 61.6
FvH4_5g05920 Fragaria vesca HOM05D004370 ORTHO05D005084 4.0e-71 272.3 277 66.8
FAN18G1507 Fragaria x ananassa HOM05D004370 ORTHO05D005084 4.0e-71 272.3 277 66.8
TAR633G2348 Trochodendron aralioides HOM05D004370 ORTHO05D005084 6.7e-71 271.6 278 66.5
Migut.E01529 Erythranthe guttata HOM05D004370 ORTHO05D005084 1.5e-70 270.4 280 71.1
Gohir.A10G005600 Gossypium hirsutum HOM05D004370 ORTHO05D005084 2.6e-70 269.6 288 63.2
Duzib160G0857 Durio zibethinus HOM05D004370 ORTHO05D005084 3.3e-70 269.2 291 63.9
SGA_v2.0_scaffold169G38655 Striga asiatica HOM05D004370 ORTHO05D005084 3.3e-70 269.2 284 64.8
SHI20646 Sapria himalayana HOM05D004370 ORTHO05D005084 5.7e-70 268.5 256 63.7
PGSC0003DMG400000167 Solanum tuberosum HOM05D004370 ORTHO05D005084 5.7e-70 268.5 208 78.8
MELO3C007041.2 Cucumis melo HOM05D004370 ORTHO05D005084 9.7e-70 267.7 300 64.0
Gorai.011G006200 Gossypium raimondii HOM05D004370 ORTHO05D005084 9.7e-70 267.7 293 63.5
Manes.14G127000 Manihot esculenta HOM05D004370 ORTHO05D005084 1.7e-69 266.9 152 87.5
Nn1g09322 Nelumbo nucifera HOM05D004370 ORTHO05D005084 2.2e-69 266.5 165 84.2
Sc10g0006890 Simmondsia chinensis HOM05D004370 ORTHO05D005084 2.2e-69 266.5 285 62.1
ClCG01G025430 Citrullus lanatus HOM05D004370 ORTHO05D005084 4.8e-69 265.4 300 64.3
Ciclev10018122m.g Citrus clementina HOM05D004370 ORTHO05D005084 4.8e-69 265.4 237 66.7
MD06G1169400 Malus domestica HOM05D004370 ORTHO05D005084 8.2e-69 264.6 300 61.7
CARHR227270 Cardamine hirsuta HOM05D004370 ORTHO05D005084 1.1e-68 264.2 292 63.4
MBI05_g12101_MAGBIO Magnolia biondii HOM05D004370 ORTHO05D005084 1.8e-68 263.5 292 63.4
PGR142G3562 Punica granatum HOM05D004370 ORTHO05D005084 2.4e-68 263.1 296 61.1
HanXRQChr10g0304281 Helianthus annuus HOM05D004370 ORTHO05D005084 3.1e-68 262.7 212 70.3
CsaV3_6G052680 Cucumis sativus L. HOM05D004370 ORTHO05D005084 4.1e-68 262.3 299 61.2
Migut.A00202 Erythranthe guttata HOM05D004370 ORTHO05D005084 5.3e-68 261.9 277 67.1
Lsat_1_v5_gn_2_112821 Lactuca sativa HOM05D004370 ORTHO05D005084 5.3e-68 261.9 152 84.9
FAN13G1169 Fragaria x ananassa HOM05D004370 ORTHO05D005084 7.0e-68 261.5 246 65.4
FAN13G1413 Fragaria x ananassa HOM05D004370 ORTHO05D005084 7.0e-68 261.5 272 62.5
CiPaw.13G141500 Carya illinoinensis HOM05D004370 ORTHO05D005084 9.1e-68 261.2 198 72.7
BolC3t20578H Brassica oleracea HOM05D004370 ORTHO05D005084 1.6e-67 260.4 263 63.1
Hma1.2p1_0258F.1_g104020 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 1.6e-67 260.4 155 86.5
Sp7g18800 Schrenkiella parvula HOM05D004370 ORTHO05D005084 1.6e-67 260.4 151 88.1
BcaNung04159 Brassica carinata HOM05D004370 ORTHO05D005084 2.0e-67 260.0 216 68.5
CDE10G0749 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 4.5e-67 258.8 281 64.8
AL7G33430 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 5.9e-67 258.5 238 63.9
Thhalv10026002m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 5.9e-67 258.5 150 88.0
Glyma.14G025900 Glycine max HOM05D004370 ORTHO05D005084 5.9e-67 258.5 172 79.7
Lj5C81T13 Lonicera japonica HOM05D004370 ORTHO05D005084 5.9e-67 258.5 225 72.0
CSS0027232 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 7.7e-67 258.1 159 83.6
Glyma.02G288900 Glycine max HOM05D004370 ORTHO05D005084 1.3e-66 257.3 152 86.8
Actinidia35547 Actinidia chinensis HOM05D004370 ORTHO05D005084 2.2e-66 256.5 240 68.8
A08p14890 Brassica napus HOM05D004370 ORTHO05D005084 2.9e-66 256.1 229 64.2
Carub.0007s2072 Capsella rubella HOM05D004370 ORTHO05D005084 2.9e-66 256.1 254 65.0
BcaB03g11674 Brassica carinata HOM05D004370 ORTHO05D005084 3.8e-66 255.8 202 69.8
C03p82950 Brassica napus HOM05D004370 ORTHO05D005084 3.8e-66 255.8 212 71.2
Lalb_Chr04g0248641 Lupinus albus HOM05D004370 ORTHO05D005084 3.8e-66 255.8 161 82.0
AT4G20440 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 5.0e-66 255.4 266 60.9
CANSAT25G2913 Cannabis sativa HOM05D004370 ORTHO05D005084 6.5e-66 255.0 152 84.9
LjContig00310g0017486 Lotus japonicus HOM05D004370 ORTHO05D005084 8.5e-66 254.6 198 72.7
Carub.0008s0400 Capsella rubella HOM05D004370 ORTHO05D005084 1.1e-65 254.2 152 86.2
CSS0048817 Camellia sinensis var. sinensis HOM05D004370 ORTHO05D005084 1.5e-65 253.8 159 83.0
Atru.chr10.664 Acer truncatum HOM05D004370 ORTHO05D005084 1.9e-65 253.4 273 64.1
A01p12130 Brassica napus HOM05D004370 ORTHO05D005084 1.9e-65 253.4 201 75.1
BraA01t01156Z Brassica rapa HOM05D004370 ORTHO05D005084 1.9e-65 253.4 201 75.1
Manes.06G060100 Manihot esculenta HOM05D004370 ORTHO05D005084 3.2e-65 252.7 299 61.2
AL8G15320 Arabidopsis lyrata HOM05D004370 ORTHO05D005084 4.2e-65 252.3 214 69.6
HanXRQChr08g0218671 Helianthus annuus HOM05D004370 ORTHO05D005084 4.2e-65 252.3 273 60.8
Phvul.008G264900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 4.2e-65 252.3 302 61.3
AT5G44500 Arabidopsis thaliana HOM05D004370 ORTHO05D005084 5.5e-65 251.9 250 63.6
TWI15G0591 Tripterygium wilfordii HOM05D004370 ORTHO05D005084 5.5e-65 251.9 145 86.9
BcaC01g00671 Brassica carinata HOM05D004370 ORTHO05D005084 7.2e-65 251.5 245 66.1
Prupe.5G168200 Prunus persica HOM05D004370 ORTHO05D005084 9.4e-65 251.1 287 63.1
Lsat_1_v5_gn_8_20501 Lactuca sativa HOM05D004370 ORTHO05D005084 1.2e-64 250.8 282 62.4
Aa31LG9G8700 Aethionema arabicum HOM05D004370 ORTHO05D005084 1.6e-64 250.4 249 67.5
Lj9P663T35 Lonicera japonica HOM05D004370 ORTHO05D005084 1.6e-64 250.4 267 59.6
Psat2g015400 Pisum sativum HOM05D004370 ORTHO05D005084 1.6e-64 250.4 292 60.3
COL.COLO4_26893 Corchorus olitorius HOM05D004370 ORTHO05D005084 2.1e-64 250.0 250 63.2
MD14G1174700 Malus domestica HOM05D004370 ORTHO05D005084 2.7e-64 249.6 286 65.4
Ca_06302_v3 Cicer arietinum L. HOM05D004370 ORTHO05D005084 3.6e-64 249.2 295 59.7
HPP92_018640 Vanilla planifolia HOM05D004370 ORTHO05D005084 3.6e-64 249.2 266 60.5
Aa31LG6G2820 Aethionema arabicum HOM05D004370 ORTHO05D005084 4.7e-64 248.8 235 68.1
Prupe.6G342400 Prunus persica HOM05D004370 ORTHO05D005084 4.7e-64 248.8 283 63.6
Rhsim07G0192400 Rhododendron simsii HOM05D004370 ORTHO05D005084 4.7e-64 248.8 185 74.1
Rhsim07G0192600 Rhododendron simsii HOM05D004370 ORTHO05D005084 4.7e-64 248.8 185 74.1
Cfa008716 Carpinus fangiana HOM05D004370 ORTHO05D005084 6.1e-64 248.4 288 64.2
arahy.Tifrunner.gnm1.ann1.B8WTIA Arachis hypogaea HOM05D004370 ORTHO05D005084 8.0e-64 248.1 287 62.7
arahy.Tifrunner.gnm1.ann1.TBHV4Q Arachis hypogaea HOM05D004370 ORTHO05D005084 8.0e-64 248.1 287 62.7
AUR62000301 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.0e-63 247.7 153 83.0
AUR62009174 Chenopodium quinoa HOM05D004370 ORTHO05D005084 1.0e-63 247.7 153 83.0
Phvul.008G234900 Phaseolus vulgaris HOM05D004370 ORTHO05D005084 1.0e-63 247.7 299 60.2
Dinv04119 Davidia involucrata HOM05D004370 ORTHO05D005084 1.4e-63 247.3 281 63.3
Lalb_Chr10g0106891 Lupinus albus HOM05D004370 ORTHO05D005084 1.4e-63 247.3 301 59.5
DCAR_006631 Daucus carota HOM05D004370 ORTHO05D005084 1.8e-63 246.9 277 63.2
TPR.G12528 Trifolium pratense HOM05D004370 ORTHO05D005084 1.8e-63 246.9 305 59.0
Ah.16g102810 Amaranthus hybridus HOM05D004370 ORTHO05D005084 3.0e-63 246.1 151 84.1
BcaC09g51319 Brassica carinata HOM05D004370 ORTHO05D005084 3.0e-63 246.1 255 62.7
BolC1t01401H Brassica oleracea HOM05D004370 ORTHO05D005084 3.0e-63 246.1 255 62.7
VMungo0647G0361 Vigna mungo HOM05D004370 ORTHO05D005084 3.0e-63 246.1 226 69.5
THA.LOC104806243 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 4.0e-63 245.7 226 68.6
BraA08t33472Z Brassica rapa HOM05D000106 ORTHO05D005084 5.2e-63 245.4 223 62.8
CDE10G0801 Ceratophyllum demersum HOM05D004370 ORTHO05D005084 5.2e-63 245.4 281 60.9
Peaxi162Scf00020g00025 Petunia axillaris HOM05D004370 ORTHO05D005084 5.2e-63 245.4 290 65.2
Sed0020090 Sechium edule HOM05D004370 ORTHO05D005084 6.8e-63 245.0 298 59.7
BcaNung05680 Brassica carinata HOM05D004370 ORTHO05D005084 8.8e-63 244.6 269 61.0
Potri.001G440100 Populus trichocarpa HOM05D004370 ORTHO05D005084 1.2e-62 244.2 293 62.1
Thhalv10001000m.g Eutrema salsugineum HOM05D004370 ORTHO05D005084 2.0e-62 243.4 152 81.6
C01p14450 Brassica napus HOM05D004370 ORTHO05D005084 3.4e-62 242.7 247 62.8
QL06p021586 Quercus lobata HOM05D004370 ORTHO05D005084 3.4e-62 242.7 263 60.1
Cc09_g05790 Coffea canephora HOM05D004370 ORTHO05D005084 4.4e-62 242.3 151 84.1
Haze_11726 Corylus avellana HOM05D004370 ORTHO05D005084 4.4e-62 242.3 287 63.8
Ah.10g036820 Amaranthus hybridus HOM05D004370 ORTHO05D005084 5.7e-62 241.9 153 81.0
RcHm_v2.0_Chr3g0451231 Rosa chinensis HOM05D004370 ORTHO05D005084 5.7e-62 241.9 169 75.7
Hma1.2p1_0892F.1_g233360 Hydrangea macrophylla HOM05D004370 ORTHO05D005084 7.5e-62 241.5 270 61.5
Potri.011G155700 Populus trichocarpa HOM05D004370 ORTHO05D005084 2.8e-61 239.6 288 60.8
unitig_899.g14482 Utricularia gibba HOM05D004370 ORTHO05D005084 3.7e-61 239.2 140 85.7
Sabra16G0297300 Salix brachista HOM05D004370 ORTHO05D005084 2.4e-60 236.5 297 61.6
Medtr8g080090 Medicago truncatula HOM05D004370 ORTHO05D005084 1.2e-59 234.2 289 59.9
Sed0027177 Sechium edule HOM05D004370 ORTHO05D005084 4.5e-59 232.3 290 61.4
Eucgr.L00005 Eucalyptus grandis HOM05D004370 ORTHO05D005084 1.7e-58 230.3 302 60.3
QL03p043504 Quercus lobata HOM05D004370 ORTHO05D005084 1.7e-58 230.3 276 56.5
unitig_736.g22531 Utricularia gibba HOM05D004370 ORTHO05D005084 2.3e-58 229.9 134 86.6
Mapoly0023s0062 Marchantia polymorpha HOM05D004370 ORTHO05D005084 5.5e-57 225.3 151 77.5
Thecc.06G007600 Theobroma cacao HOM05D004370 ORTHO05D005084 1.6e-56 223.8 299 60.2
Zm00001eb117150 Zea mays HOM05D004370 ORTHO05D005084 6.1e-56 221.9 205 64.4
ATR0697G198 Amborella trichopoda HOM05D004370 ORTHO05D005084 1.4e-55 220.7 249 58.6
RcHm_v2.0_Chr7g0192911 Rosa chinensis HOM05D004370 ORTHO05D005084 1.2e-54 217.6 285 57.9
THA.LOC104812077 Tarenaya hassleriana HOM05D004370 ORTHO05D005084 9.8e-54 214.5 289 61.2
A03p52450 Brassica napus HOM05D004370 ORTHO05D005084 2.7e-51 206.5 229 60.7
C07p50900 Brassica napus HOM05D000106 ORTHO05D000160 7.8e-51 204.9 186 64.0
Lsat_1_v5_gn_8_16800 Lactuca sativa HOM05D004370 ORTHO05D005084 1.7e-50 203.8 121 82.6
PSO339G5217 Papaver somniferum HOM05D004370 ORTHO05D005084 8.6e-50 201.4 293 54.9
PSO384G4426 Papaver somniferum HOM05D004370 ORTHO05D005084 8.6e-50 201.4 293 54.9
AUR62022051 Chenopodium quinoa HOM05D004370 ORTHO05D005084 4.3e-49 199.1 198 59.6
BcaNung05058 Brassica carinata HOM05D004370 ORTHO05D005084 7.3e-49 198.4 134 78.4
CBR_g48393 Chara braunii HOM05D004370 ORTHO05D005084 6.1e-48 195.3 333 46.8
Sabra11G0144100 Salix brachista HOM05D004370 ORTHO05D005084 6.1e-48 195.3 268 55.6
Cre14.g611150 Chlamydomonas reinhardtii HOM05D004370 ORTHO05D005084 1.5e-46 190.7 146 67.1
SEGI_35791 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 2.4e-44 183.3 252 56.3
MCO12G128 Micromonas commoda HOM05D004370 ORTHO05D005084 7.8e-43 178.3 151 61.6
arahy.Tifrunner.gnm1.ann1.IZ2YN8 Arachis hypogaea HOM05D004370 ORTHO05D005084 5.0e-42 175.6 212 55.7
Zm00001eb300870 Zea mays HOM05D004370 ORTHO05D005084 5.0e-42 175.6 212 53.3
MD04G1223300 Malus domestica HOM05D004370 ORTHO05D005084 2.8e-40 169.9 123 71.5
Dinv23904 Davidia involucrata HOM05D004370 ORTHO05D005084 2.0e-38 163.7 163 60.1
arahy.Tifrunner.gnm1.ann1.1VG4JJ Arachis hypogaea HOM05D004370 ORTHO05D005084 3.9e-34 149.4 197 53.3
SMO367G1222 Selaginella moellendorffii HOM05D004370 ORTHO05D005084 1.5e-33 147.5 94 77.7
Pp3c3_24850 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.6e-32 142.9 248 43.5
Pp3c3_24900 Physcomitrium patens HOM05D004370 ORTHO05D005084 3.6e-32 142.9 248 43.5
MD04G1002600 Malus domestica HOM05D004370 ORTHO05D005084 6.8e-31 138.7 103 68.9
Pp3c3_24910 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.3e-29 134.4 245 44.1
PRCOL_00001809 Prasinoderma coloniale HOM05D004370 ORTHO05D005084 8.3e-29 131.7 136 52.9
Pp3c10_22940 Physcomitrium patens HOM05D004370 ORTHO05D005084 1.1e-28 131.3 283 40.3
AUR62009175 Chenopodium quinoa HOM05D004370 ORTHO05D005084 3.2e-20 103.2 288 41.0
Oeu011279.1 Olea europaea HOM05D004370 ORTHO05D005084 3.3e-17 93.2 297 39.1
BraA03t14323Z Brassica rapa HOM05D004370 ORTHO05D005084 2.4e-15 87.0 152 49.3
BcaNung05387 Brassica carinata HOM05D004370 ORTHO05D005084 4.4e-14 82.8 104 51.0
SEGI_08107 Sequoiadendron giganteum HOM05D004370 ORTHO05D005084 2.2e-13 80.5 52 71.2
GSVIVG01034611001 Vitis vinifera HOM05D004370 ORTHO05D005084 8.4e-13 78.6 40 95.0


User provided reference genes

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