Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu028438.1 Olea europaea HOM05D003334 ORTHO05D004076 2.5e-121 438.7 210 100.0
unitig_32.g11639 Utricularia gibba HOM05D003334 ORTHO05D004076 1.2e-46 190.7 118 78.8
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 2.0e-46 189.9 134 69.4
Migut.E01397 Erythranthe guttata HOM05D003334 ORTHO05D004076 2.6e-46 189.5 121 77.7
Oeu044972.2 Olea europaea HOM05D003334 ORTHO05D004076 2.6e-46 189.5 121 77.7
SalBow8G4285 Salvia bowleyana HOM05D003334 ORTHO05D004076 5.8e-46 188.3 121 76.9
Nitab4.5_0009273g0030 Nicotiana tabacum HOM05D003334 ORTHO05D004076 7.6e-46 188.0 121 76.0
ClCG09G011880 Citrullus lanatus HOM05D003334 ORTHO05D004076 9.9e-46 187.6 121 75.2
CsaV3_5G014480 Cucumis sativus L. HOM05D003334 ORTHO05D004076 9.9e-46 187.6 121 75.2
Dinv27617 Davidia involucrata HOM05D003334 ORTHO05D004076 9.9e-46 187.6 121 75.2
Gohir.A09G104500 Gossypium hirsutum HOM05D003334 ORTHO05D004076 9.9e-46 187.6 121 75.2
Gohir.D09G101200 Gossypium hirsutum HOM05D003334 ORTHO05D004076 9.9e-46 187.6 121 75.2
Gorai.006G118600 Gossypium raimondii HOM05D003334 ORTHO05D004076 9.9e-46 187.6 121 75.2
Sed0023632 Sechium edule HOM05D003334 ORTHO05D004076 9.9e-46 187.6 121 75.2
Thecc.09G264900 Theobroma cacao HOM05D003334 ORTHO05D004076 9.9e-46 187.6 121 75.2
Cpa.g.sc1142.2 Carica papaya HOM05D003334 ORTHO05D004076 1.3e-45 187.2 121 74.4
Dinv04743 Davidia involucrata HOM05D003334 ORTHO05D004076 1.3e-45 187.2 121 74.4
Ciclev10008518m.g Citrus clementina HOM05D003334 ORTHO05D004076 1.7e-45 186.8 121 75.2
MELO3C016671.2 Cucumis melo HOM05D003334 ORTHO05D004076 1.7e-45 186.8 95 89.5
Sed0014785 Sechium edule HOM05D003334 ORTHO05D004076 1.7e-45 186.8 121 74.4
Solyc08g074410.4 Solanum lycopersicum HOM05D003334 ORTHO05D004076 2.2e-45 186.4 121 74.4
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 2.2e-45 186.4 121 74.4
PGSC0003DMG400029565 Solanum tuberosum HOM05D003334 ORTHO05D004076 2.2e-45 186.4 121 74.4
Nitab4.5_0003036g0010 Nicotiana tabacum HOM05D003334 ORTHO05D004076 2.9e-45 186.0 121 75.2
RcHm_v2.0_Chr3g0493481 Rosa chinensis HOM05D003334 ORTHO05D004076 4.9e-45 185.3 121 73.6
Duzib168G1687 Durio zibethinus HOM05D003334 ORTHO05D004076 6.4e-45 184.9 121 73.6
Eucgr.B01376 Eucalyptus grandis HOM05D003334 ORTHO05D004076 6.4e-45 184.9 121 73.6
Eucgr.B01628 Eucalyptus grandis HOM05D003334 ORTHO05D004076 6.4e-45 184.9 121 73.6
Lj7A725T58 Lonicera japonica HOM05D003334 ORTHO05D004076 6.4e-45 184.9 121 73.6
GSVIVG01020576001 Vitis vinifera HOM05D003334 ORTHO05D004076 6.4e-45 184.9 121 73.6
MD04G1236500 Malus domestica HOM05D003334 ORTHO05D004076 8.4e-45 184.5 121 73.6
Atru.chr7.238 Acer truncatum HOM05D003334 ORTHO05D004076 1.1e-44 184.1 121 72.7
FAN07G2734 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.1e-44 184.1 121 73.6
FAN22G0185 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.1e-44 184.1 121 73.6
Prupe.7G057800 Prunus persica HOM05D003334 ORTHO05D004076 1.1e-44 184.1 121 73.6
RcHm_v2.0_Chr7g0223011 Rosa chinensis HOM05D003334 ORTHO05D004076 1.1e-44 184.1 121 73.6
MSTRG.11832 Avicennia marina HOM05D003334 ORTHO05D004076 1.4e-44 183.7 95 88.4
CAN.G195.16 Capsicum annuum HOM05D003334 ORTHO05D004076 1.4e-44 183.7 121 74.4
FvH4_4g11950 Fragaria vesca HOM05D003334 ORTHO05D004076 1.9e-44 183.3 121 72.7
FAN12G4063 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.9e-44 183.3 121 72.7
HanXRQChr17g0559071 Helianthus annuus HOM05D003334 ORTHO05D004076 1.9e-44 183.3 121 72.7
Lsat_1_v5_gn_2_16301 Lactuca sativa HOM05D003334 ORTHO05D004076 2.4e-44 183.0 121 71.9
MD12G1255800 Malus domestica HOM05D003334 ORTHO05D004076 2.4e-44 183.0 121 72.7
FAN17G0794 Fragaria x ananassa HOM05D003334 ORTHO05D004076 3.2e-44 182.6 121 72.7
PGR119G1638 Punica granatum HOM05D003334 ORTHO05D004076 4.2e-44 182.2 121 72.7
TAR636G1778 Trochodendron aralioides HOM05D003334 ORTHO05D004076 4.2e-44 182.2 121 71.1
TAR365G0738 Trochodendron aralioides HOM05D003334 ORTHO05D004076 5.4e-44 181.8 121 71.1
Peaxi162Scf00213g01416 Petunia axillaris HOM05D003334 ORTHO05D004076 7.1e-44 181.4 95 87.4
ATR0743G002 Amborella trichopoda HOM05D003334 ORTHO05D004076 1.2e-43 180.6 121 71.9
BolC3t16365H Brassica oleracea HOM05D003334 ORTHO05D004076 1.2e-43 180.6 144 63.2
BraA03t12541Z Brassica rapa HOM05D003334 ORTHO05D004076 1.2e-43 180.6 144 63.2
HanXRQChr11g0333651 Helianthus annuus HOM05D003334 ORTHO05D004076 1.2e-43 180.6 121 71.1
TWI15G0949 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 1.2e-43 180.6 121 72.7
THA.LOC104802839 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 1.6e-43 180.3 121 71.9
CANSAT54G0453 Cannabis sativa HOM05D003334 ORTHO05D004076 2.1e-43 179.9 121 71.1
MBI07_g42069_MAGBIO Magnolia biondii HOM05D003334 ORTHO05D004076 2.7e-43 179.5 121 71.1
CSS0022391 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 3.5e-43 179.1 121 71.1
Prupe.7G057000 Prunus persica HOM05D003334 ORTHO05D004076 3.5e-43 179.1 121 70.2
vmacro00932 Vaccinium macrocarpon HOM05D003334 ORTHO05D004076 3.5e-43 179.1 121 71.1
BraA01t04517Z Brassica rapa HOM05D003334 ORTHO05D004076 4.6e-43 178.7 130 67.7
COL.COLO4_25317 Corchorus olitorius HOM05D003334 ORTHO05D004076 4.6e-43 178.7 121 71.1
Sabra09G0124600 Salix brachista HOM05D003334 ORTHO05D004076 4.6e-43 178.7 121 70.2
CSS0036286 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 6.0e-43 178.3 121 71.1
Hma1.2p1_0123F.1_g058080 Hydrangea macrophylla HOM05D003334 ORTHO05D004076 6.0e-43 178.3 121 70.2
BcaB04g19317 Brassica carinata HOM05D003334 ORTHO05D004076 7.9e-43 177.9 121 71.1
BcaB04g21362 Brassica carinata HOM05D003334 ORTHO05D004076 7.9e-43 177.9 121 71.1
BcaC01g04365 Brassica carinata HOM05D003334 ORTHO05D004076 7.9e-43 177.9 121 71.1
BcaC01g04366 Brassica carinata HOM05D003334 ORTHO05D004076 7.9e-43 177.9 121 71.1
BcaC09g47791 Brassica carinata HOM05D003334 ORTHO05D004076 7.9e-43 177.9 121 71.1
A01p40810 Brassica napus HOM05D003334 ORTHO05D004076 7.9e-43 177.9 121 71.1
A03p33670 Brassica napus HOM05D003334 ORTHO05D004076 7.9e-43 177.9 121 71.1
BNapus_Darmor_BZH_scaffold_78p00900 Brassica napus HOM05D003334 ORTHO05D004076 7.9e-43 177.9 121 71.1
C03p40860 Brassica napus HOM05D003334 ORTHO05D004076 7.9e-43 177.9 121 71.1
BolC1t05738H Brassica oleracea HOM05D003334 ORTHO05D004076 7.9e-43 177.9 121 71.1
BolC3t16357H Brassica oleracea HOM05D003334 ORTHO05D004076 7.9e-43 177.9 121 71.1
CDE08G0778 Ceratophyllum demersum HOM05D003334 ORTHO05D004076 7.9e-43 177.9 121 70.2
Potri.009G159300 Populus trichocarpa HOM05D003334 ORTHO05D004076 7.9e-43 177.9 121 70.2
TWI34G0756 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 7.9e-43 177.9 121 70.2
Sp3g03440 Schrenkiella parvula HOM05D003334 ORTHO05D004076 1.0e-42 177.6 121 70.2
RcHm_v2.0_Chr7g0219221 Rosa chinensis HOM05D003334 ORTHO05D004076 1.3e-42 177.2 95 83.2
THA.LOC104821663 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 1.3e-42 177.2 121 70.2
AL3G14620 Arabidopsis lyrata HOM05D003334 ORTHO05D004076 1.8e-42 176.8 121 70.2
Thhalv10020864m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 1.8e-42 176.8 121 70.2
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 2.3e-42 176.4 114 76.3
Aa31LG5G20570 Aethionema arabicum HOM05D003334 ORTHO05D004076 3.0e-42 176.0 121 70.2
Hund21749 Selenicereus undatus HOM05D003334 ORTHO05D004076 3.0e-42 176.0 95 83.2
SEGI_21996 Sequoiadendron giganteum HOM05D003334 ORTHO05D004076 5.1e-42 175.3 121 71.1
Lalb_Chr21g0312861 Lupinus albus HOM05D003334 ORTHO05D004076 6.7e-42 174.9 121 71.1
Manes.12G077800 Manihot esculenta HOM05D003334 ORTHO05D004076 6.7e-42 174.9 95 82.1
Thhalv10004344m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 8.7e-42 174.5 121 70.2
Mapoly0053s0020 Marchantia polymorpha HOM05D003334 ORTHO05D004076 1.5e-41 173.7 95 82.1
PSO063G6945 Papaver somniferum HOM05D003334 ORTHO05D004076 1.5e-41 173.7 121 66.9
PSO170G1996 Papaver somniferum HOM05D003334 ORTHO05D004076 1.5e-41 173.7 121 66.9
HPP92_011708 Vanilla planifolia HOM05D003334 ORTHO05D004076 2.5e-41 172.9 121 66.1
Carub.0003s0375 Capsella rubella HOM05D003334 ORTHO05D004076 3.3e-41 172.6 121 68.6
AUR62005286 Chenopodium quinoa HOM05D003334 ORTHO05D004076 3.3e-41 172.6 111 74.8
Medtr8g007305 Medicago truncatula HOM05D003334 ORTHO05D004076 3.3e-41 172.6 121 70.2
Os12g0540900 Oryza sativa ssp. japonica HOM05D003334 ORTHO05D004076 3.3e-41 172.6 121 69.4
Ah.15g091810 Amaranthus hybridus HOM05D003334 ORTHO05D004076 5.6e-41 171.8 111 73.0
ECA238G1984 Erigeron canadensis HOM05D003334 ORTHO05D004076 7.4e-41 171.4 95 80.0
TPR.G5320 Trifolium pratense HOM05D003334 ORTHO05D004076 7.4e-41 171.4 95 81.1
arahy.Tifrunner.gnm1.ann1.GB3JX0 Arachis hypogaea HOM05D003334 ORTHO05D004076 1.6e-40 170.2 121 68.6
arahy.Tifrunner.gnm1.ann1.L2SHRD Arachis hypogaea HOM05D003334 ORTHO05D004076 1.6e-40 170.2 121 68.6
Ca_14800_v3 Cicer arietinum L. HOM05D003334 ORTHO05D004076 1.6e-40 170.2 121 67.8
Psat2g164840 Pisum sativum HOM05D003334 ORTHO05D004076 2.8e-40 169.5 121 67.8
Psat4g222840 Pisum sativum HOM05D003334 ORTHO05D004076 2.8e-40 169.5 121 67.8
Sc06g0005180 Simmondsia chinensis HOM05D003334 ORTHO05D004076 4.8e-40 168.7 121 66.1
Lj3g0011249 Lotus japonicus HOM05D003334 ORTHO05D004076 1.4e-39 167.2 121 67.8
Nitab4.5_0006136g0020 Nicotiana tabacum HOM05D003334 ORTHO05D004076 1.4e-39 167.2 149 61.1
Glyma.13G008200 Glycine max HOM05D003334 ORTHO05D004076 2.4e-39 166.4 121 66.9
Phvul.010G046300 Phaseolus vulgaris HOM05D003334 ORTHO05D004076 3.1e-39 166.0 121 67.8
VMungo0331G0230 Vigna mungo HOM05D003334 ORTHO05D004076 4.0e-39 165.6 95 80.0
Glyma.03G108900 Glycine max HOM05D003334 ORTHO05D004076 5.3e-39 165.2 121 65.3
AT3G04600 Arabidopsis thaliana HOM05D003334 ORTHO05D004076 6.9e-39 164.9 121 66.9
PRCOL_00004976 Prasinoderma coloniale HOM05D003334 ORTHO05D004076 9.0e-39 164.5 121 66.9
QL01p002114 Quercus lobata HOM05D003334 ORTHO05D004076 9.0e-39 164.5 121 66.9
Pp3c2_27540 Physcomitrium patens HOM05D003334 ORTHO05D004076 1.2e-38 164.1 95 77.9
CiPaw.07G196900 Carya illinoinensis HOM05D003334 ORTHO05D004076 2.0e-38 163.3 121 64.5
QL06p038393 Quercus lobata HOM05D003334 ORTHO05D004076 2.0e-38 163.3 121 66.1
EL10Ac4g09810 Beta vulgaris HOM05D003334 ORTHO05D004076 2.6e-38 162.9 121 65.3
Aqoxy7G02117 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 5.8e-38 161.8 121 62.0
Actinidia29400 Actinidia chinensis HOM05D003334 ORTHO05D004076 1.0e-37 161.0 89 79.8
SMO143G0103 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 1.0e-37 161.0 121 64.5
Haze_07729 Corylus avellana HOM05D003334 ORTHO05D004076 1.7e-37 160.2 121 65.3
Thhalv10003092m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 2.2e-37 159.8 121 62.8
Rhsim12G0003500 Rhododendron simsii HOM05D003334 ORTHO05D004076 2.9e-37 159.5 158 53.8
SHI16564 Sapria himalayana HOM05D003334 ORTHO05D004076 2.9e-37 159.5 121 62.8
CBR_g37637 Chara braunii HOM05D003334 ORTHO05D004076 3.8e-37 159.1 121 61.2
Cfa013451 Carpinus fangiana HOM05D003334 ORTHO05D004076 8.4e-37 157.9 121 63.6
Zm00001eb054210 Zea mays HOM05D003334 ORTHO05D004076 1.1e-36 157.5 121 61.2
Aqoxy7G03650 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 9.3e-36 154.5 122 60.7
CARHR060040 Cardamine hirsuta HOM05D003334 ORTHO05D004076 6.0e-35 151.8 121 57.0
Duzib170G0367 Durio zibethinus HOM05D003334 ORTHO05D004076 6.0e-35 151.8 107 70.1
Sp6g11650 Schrenkiella parvula HOM05D003334 ORTHO05D004076 7.9e-35 151.4 121 60.3
Cre12.g522350 Chlamydomonas reinhardtii HOM05D003334 ORTHO05D004076 8.7e-34 147.9 121 57.9
Nn1g02302 Nelumbo nucifera HOM05D003334 ORTHO05D004076 8.7e-34 147.9 107 67.3
BcaB04g21381 Brassica carinata HOM05D003334 ORTHO05D004076 9.6e-33 144.4 95 68.4
BcaB06g25549 Brassica carinata HOM05D003334 ORTHO05D004076 2.8e-32 142.9 95 67.4
SGA_v2.0_scaffold269G46296 Striga asiatica HOM05D003334 ORTHO05D004076 1.2e-30 137.5 98 71.4
BolC3t16362H Brassica oleracea HOM05D003334 ORTHO05D004076 3.4e-30 136.0 103 64.1
MCO14G308 Micromonas commoda HOM05D003334 ORTHO05D004076 4.5e-30 135.6 121 55.4
BcaC09g48536 Brassica carinata HOM05D003334 ORTHO05D004076 1.3e-29 134.0 95 63.2
Atru.chr5.3183 Acer truncatum HOM05D003334 ORTHO05D004076 6.5e-29 131.7 97 61.9
A07p01960 Brassica napus HOM05D003334 ORTHO05D004076 3.2e-28 129.4 122 55.7
BraA07t27995Z Brassica rapa HOM05D003334 ORTHO05D004076 3.2e-28 129.4 122 55.7
C07p04090 Brassica napus HOM05D003334 ORTHO05D004076 5.5e-28 128.6 96 64.6
BolC7t40804H Brassica oleracea HOM05D003334 ORTHO05D004076 9.3e-28 127.9 95 65.3
Aa31LG5G15020 Aethionema arabicum HOM05D003334 ORTHO05D004076 1.6e-27 127.1 106 56.6
BcaB03g16657 Brassica carinata HOM05D003334 ORTHO05D004076 1.8e-26 123.6 122 54.1
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 2.3e-26 123.2 95 61.1
BolC1t05722H Brassica oleracea HOM05D003334 ORTHO05D004076 3.9e-26 122.5 95 60.0
BcaC09g47814 Brassica carinata HOM05D003334 ORTHO05D004076 8.7e-26 121.3 95 58.9
Oeu028097.1 Olea europaea HOM05D003334 ORTHO05D004076 1.1e-25 120.9 101 62.4
Hma1.2p1_1064F.1_g253620 Hydrangea macrophylla HOM05D003334 ORTHO05D004076 4.3e-25 119.0 139 45.3
Oeu028126.2 Olea europaea HOM05D003334 ORTHO05D004076 8.2e-24 114.8 85 69.4
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.8e-23 113.6 96 57.3
CARHR078780 Cardamine hirsuta HOM05D003334 ORTHO05D004076 2.4e-23 113.2 85 65.9
SMO352G0088 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 2.5e-20 103.2 96 49.0
Os07g0278400 Oryza sativa ssp. japonica HOM05D003334 ORTHO05D004076 9.4e-20 101.3 88 54.5
FAN04G0408 Fragaria x ananassa HOM05D003334 ORTHO05D004076 6.9e-15 85.1 49 73.5
Peaxi162Scf00020g00242 Petunia axillaris HOM05D003334 ORTHO05D004076 1.2e-14 84.3 59 67.8
Haze_26816 Corylus avellana HOM05D003334 ORTHO05D004076 9.4e-12 74.7 101 38.6
FAN09G0153 Fragaria x ananassa HOM05D003334 ORTHO05D004076 2.7e-11 73.2 43 76.7
CARHR078790 Cardamine hirsuta HOM05D003334 ORTHO05D004076 3.9e-10 69.3 41 70.7
Prupe.6G356500 Prunus persica HOM05D003334 ORTHO05D004076 7.4e-09 65.1 33 87.9
C01p39540 Brassica napus HOM05D003334 ORTHO05D004076 1.2e-06 57.8 37 70.3


User provided reference genes

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