Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu027346.1 Olea europaea HOM05D001578 ORTHO05D001207 8.6e-54 213.4 107 100.0
THA.LOC104820316 Tarenaya hassleriana HOM05D001578 ORTHO05D001207 2.8e-20 102.1 107 47.7
Oeu016575.1 Olea europaea HOM05D001578 ORTHO05D001207 1.5e-18 96.3 103 53.4
MSTRG.16314 Avicennia marina HOM05D001578 ORTHO05D001207 2.6e-18 95.5 104 46.2
BcaC08g42990 Brassica carinata HOM05D001578 ORTHO05D001207 9.9e-18 93.6 107 39.3
C06p02320 Brassica napus HOM05D001578 ORTHO05D001207 9.9e-18 93.6 107 39.3
BolC6t35358H Brassica oleracea HOM05D001578 ORTHO05D001207 9.9e-18 93.6 107 39.3
BraA06t23683Z Brassica rapa HOM05D001578 ORTHO05D001207 1.3e-17 93.2 107 39.3
BcaB07g33804 Brassica carinata HOM05D001578 ORTHO05D001207 1.7e-17 92.8 107 40.2
A06p04790 Brassica napus HOM05D001578 ORTHO05D001207 1.7e-17 92.8 107 39.3
Actinidia18466 Actinidia chinensis HOM05D001578 ORTHO05D001207 8.4e-17 90.5 108 45.4
AL1G54460 Arabidopsis lyrata HOM05D001578 ORTHO05D001207 1.1e-16 90.1 107 37.4
Aa31LG10G5830 Aethionema arabicum HOM05D001578 ORTHO05D001207 1.4e-16 89.7 104 39.4
Carub.0001s3704 Capsella rubella HOM05D001578 ORTHO05D001207 1.9e-16 89.4 107 37.4
AT1G47960 Arabidopsis thaliana HOM05D001578 ORTHO05D001207 2.4e-16 89.0 101 37.6
Thhalv10011825m.g Eutrema salsugineum HOM05D001578 ORTHO05D001207 2.4e-16 89.0 107 39.3
CARHR037580 Cardamine hirsuta HOM05D001578 ORTHO05D001207 3.2e-16 88.6 107 37.4
Lsat_1_v5_gn_5_185420 Lactuca sativa HOM05D001578 ORTHO05D001207 1.6e-15 86.3 110 40.9
Ca_21410_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 2.1e-15 85.9 102 40.2
Lsat_1_v5_gn_5_185380 Lactuca sativa HOM05D001578 ORTHO05D001207 3.5e-15 85.1 110 40.0
SalBow8G1966 Salvia bowleyana HOM05D001578 ORTHO05D001207 3.5e-15 85.1 110 40.9
SalBow8G3310 Salvia bowleyana HOM05D001578 ORTHO05D001207 3.5e-15 85.1 110 40.9
Dinv44262 Davidia involucrata HOM05D001578 ORTHO05D001207 4.6e-15 84.7 108 41.7
Cc03_g00600 Coffea canephora HOM05D001578 ORTHO05D001207 6.0e-15 84.3 108 40.7
Sopen12g033870 Solanum pennellii HOM05D001578 ORTHO05D001207 6.0e-15 84.3 111 38.7
ECA233G5780 Erigeron canadensis HOM05D001578 ORTHO05D001207 7.9e-15 84.0 110 39.1
PGSC0003DMG400004616 Solanum tuberosum HOM05D001578 ORTHO05D001207 7.9e-15 84.0 111 41.4
Lalb_Chr07g0181941 Lupinus albus HOM05D001578 ORTHO05D001207 1.0e-14 83.6 109 40.4
VMungo1215G0431 Vigna mungo HOM05D001578 ORTHO05D001207 1.0e-14 83.6 109 39.4
Lsat_1_v5_gn_7_59360 Lactuca sativa HOM05D001578 ORTHO05D001207 1.3e-14 83.2 110 39.1
Lsat_1_v5_gn_7_59420 Lactuca sativa HOM05D001578 ORTHO05D001207 1.3e-14 83.2 110 39.1
HanXRQChr13g0395221 Helianthus annuus HOM05D001578 ORTHO05D001207 1.8e-14 82.8 110 38.2
Migut.N00031 Erythranthe guttata HOM05D001578 ORTHO05D001207 2.3e-14 82.4 103 45.6
Ciclev10006791m.g Citrus clementina HOM05D001578 ORTHO05D001207 3.9e-14 81.6 107 41.1
Nitab4.5_0002150g0010 Nicotiana tabacum HOM05D001578 ORTHO05D001207 3.9e-14 81.6 110 40.0
TPR.G25397 Trifolium pratense HOM05D001578 ORTHO05D001207 3.9e-14 81.6 102 37.3
Manes.03G207100 Manihot esculenta HOM05D001578 ORTHO05D001207 5.1e-14 81.3 107 37.4
Medtr4g122800 Medicago truncatula HOM05D001578 ORTHO05D001207 6.7e-14 80.9 102 36.3
CARHR092390 Cardamine hirsuta HOM05D001578 ORTHO05D001207 8.7e-14 80.5 108 38.0
Solyc12g099190.1 Solanum lycopersicum HOM05D001578 ORTHO05D001207 8.7e-14 80.5 111 37.8
Sabra10G0043600 Salix brachista HOM05D001578 ORTHO05D001207 1.1e-13 80.1 107 39.3
Lsat_1_v5_gn_7_59300 Lactuca sativa HOM05D001578 ORTHO05D001207 1.5e-13 79.7 110 38.2
Potri.010G063000 Populus trichocarpa HOM05D001578 ORTHO05D001207 1.5e-13 79.7 107 39.3
C01p47100 Brassica napus HOM05D001578 ORTHO05D001207 3.3e-13 78.6 108 37.0
Haze_01334 Corylus avellana HOM05D001578 ORTHO05D001207 3.3e-13 78.6 103 39.8
Haze_01339 Corylus avellana HOM05D001578 ORTHO05D001207 3.3e-13 78.6 103 39.8
HanXRQChr13g0395161 Helianthus annuus HOM05D001578 ORTHO05D001207 4.3e-13 78.2 108 41.7
Psat0s2823g0080 Pisum sativum HOM05D001578 ORTHO05D001207 5.6e-13 77.8 103 37.9
BolC1t04676H Brassica oleracea HOM05D001578 ORTHO05D001207 7.4e-13 77.4 108 37.0
Carub.0003s1688 Capsella rubella HOM05D001578 ORTHO05D001207 9.6e-13 77.0 108 36.1
FAN07G2152 Fragaria x ananassa HOM05D001578 ORTHO05D001207 9.6e-13 77.0 107 42.1
Phvul.003G117300 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 9.6e-13 77.0 109 36.7
BcaC09g48670 Brassica carinata HOM05D001578 ORTHO05D001207 1.3e-12 76.6 108 36.1
HanXRQChr13g0395201 Helianthus annuus HOM05D001578 ORTHO05D001207 1.3e-12 76.6 109 41.3
A01p37160 Brassica napus HOM05D001578 ORTHO05D001207 1.6e-12 76.3 108 36.1
BraA01t03777Z Brassica rapa HOM05D001578 ORTHO05D001207 1.6e-12 76.3 108 36.1
CiPaw.01G135600 Carya illinoinensis HOM05D001578 ORTHO05D001207 1.6e-12 76.3 109 37.6
FvH4_4g20440 Fragaria vesca HOM05D001578 ORTHO05D001207 1.6e-12 76.3 107 42.1
FAN12G2021 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.6e-12 76.3 107 42.1
HanXRQChr13g0393461 Helianthus annuus HOM05D001578 ORTHO05D001207 1.6e-12 76.3 108 39.8
Phvul.003G117400 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 1.6e-12 76.3 109 36.7
AL3G30120 Arabidopsis lyrata HOM05D001578 ORTHO05D001207 2.1e-12 75.9 108 35.2
Glyma.20G029000 Glycine max HOM05D001578 ORTHO05D001207 2.8e-12 75.5 110 38.2
Manes.15G002100 Manihot esculenta HOM05D001578 ORTHO05D001207 2.8e-12 75.5 107 37.4
Glyma.20G028700 Glycine max HOM05D001578 ORTHO05D001207 4.8e-12 74.7 110 37.3
Medtr4g122890 Medicago truncatula HOM05D001578 ORTHO05D001207 4.8e-12 74.7 103 36.9
Peaxi162Scf00228g00064 Petunia axillaris HOM05D001578 ORTHO05D001207 4.8e-12 74.7 113 38.1
BcaB04g20862 Brassica carinata HOM05D001578 ORTHO05D001207 6.2e-12 74.3 108 36.1
Glyma.20G029200 Glycine max HOM05D001578 ORTHO05D001207 6.2e-12 74.3 110 38.2
Glyma.20G029500 Glycine max HOM05D001578 ORTHO05D001207 6.2e-12 74.3 110 38.2
CAN.G1075.28 Capsicum annuum HOM05D001578 ORTHO05D001207 8.2e-12 73.9 105 44.8
Thhalv10021672m.g Eutrema salsugineum HOM05D001578 ORTHO05D001207 8.2e-12 73.9 108 35.2
Sabra10G0043700 Salix brachista HOM05D001578 ORTHO05D001207 1.1e-11 73.6 107 35.5
Cfa015283 Carpinus fangiana HOM05D001578 ORTHO05D001207 1.4e-11 73.2 104 36.5
BcaB04g18932 Brassica carinata HOM05D001578 ORTHO05D001207 1.8e-11 72.8 108 36.1
CSS0012414 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 1.8e-11 72.8 108 38.9
CSS0020686 Camellia sinensis var. sinensis HOM05D001578 ORTHO05D001207 1.8e-11 72.8 108 38.9
Duzib177G0524 Durio zibethinus HOM05D001578 ORTHO05D001207 1.8e-11 72.8 110 35.5
HanXRQChr13g0395171 Helianthus annuus HOM05D001578 ORTHO05D001207 1.8e-11 72.8 109 38.5
Medtr4g122750 Medicago truncatula HOM05D001578 ORTHO05D001207 1.8e-11 72.8 107 34.6
Dinv18323 Davidia involucrata HOM05D000034 ORTHO05D000277 2.4e-11 72.4 103 36.9
Glyma.17G036300 Glycine max HOM05D001578 ORTHO05D001207 2.4e-11 72.4 105 36.2
Phvul.003G117200 Phaseolus vulgaris HOM05D001578 ORTHO05D001207 3.1e-11 72.0 109 34.9
AT3G17140 Arabidopsis thaliana HOM05D001578 ORTHO05D001207 4.0e-11 71.6 102 36.3
Glyma.20G028900 Glycine max HOM05D001578 ORTHO05D001207 4.0e-11 71.6 105 38.1
Glyma.20G029700 Glycine max HOM05D001578 ORTHO05D001207 9.0e-11 70.5 105 37.1
Lsat_1_v5_gn_6_301 Lactuca sativa HOM05D001578 ORTHO05D001207 9.0e-11 70.5 110 33.6
Nitab4.5_0002294g0130 Nicotiana tabacum HOM05D001578 ORTHO05D001207 9.0e-11 70.5 93 37.6
Ca_21409_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 1.2e-10 70.1 107 31.8
Ca_21424_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 1.2e-10 70.1 107 31.8
Ca_21425_v3 Cicer arietinum L. HOM05D001578 ORTHO05D001207 1.2e-10 70.1 107 31.8
FAN18G0021 Fragaria x ananassa HOM05D001578 ORTHO05D001207 1.2e-10 70.1 108 42.6
MD16G1150100 Malus domestica HOM05D001578 ORTHO05D001207 1.2e-10 70.1 98 39.8
CAN.G1359.1 Capsicum annuum HOM05D001578 ORTHO05D001207 1.5e-10 69.7 105 38.1
HanXRQChr13g0395211 Helianthus annuus HOM05D001578 ORTHO05D001207 1.5e-10 69.7 109 36.7
PGSC0003DMG400004618 Solanum tuberosum HOM05D001578 ORTHO05D001207 2.0e-10 69.3 105 37.1
TPR.G25429 Trifolium pratense HOM05D001578 ORTHO05D001207 2.0e-10 69.3 108 32.4
HanXRQChr13g0395151 Helianthus annuus HOM05D001578 ORTHO05D001207 3.4e-10 68.6 108 36.1
Nitab4.5_0000651g0280 Nicotiana tabacum HOM05D001578 ORTHO05D001207 3.4e-10 68.6 109 39.4
TWI53G0804 Tripterygium wilfordii HOM05D001578 ORTHO05D001207 4.5e-10 68.2 107 36.4
FvH4_5g04330 Fragaria vesca HOM05D001578 ORTHO05D001207 7.6e-10 67.4 99 44.4
Migut.N00030 Erythranthe guttata HOM05D001578 ORTHO05D001207 1.0e-09 67.0 95 45.3
Gohir.A05G275500 Gossypium hirsutum HOM05D001578 ORTHO05D001207 1.7e-09 66.2 108 34.3
MSTRG.24829 Avicennia marina HOM05D001578 ORTHO05D001207 2.2e-09 65.9 109 35.8
CARHR268400 Cardamine hirsuta HOM05D001578 ORTHO05D001207 2.2e-09 65.9 103 33.0
COL.COLO4_34577 Corchorus olitorius HOM05D001578 ORTHO05D001207 2.2e-09 65.9 107 37.4
Gohir.D05G277600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 2.2e-09 65.9 108 34.3
Gohir.D10G180600 Gossypium hirsutum HOM05D001578 ORTHO05D001207 2.2e-09 65.9 112 35.7
Gorai.009G290600 Gossypium raimondii HOM05D001578 ORTHO05D001207 2.2e-09 65.9 108 34.3
Gorai.011G202100 Gossypium raimondii HOM05D001578 ORTHO05D001207 2.2e-09 65.9 112 35.7
CANSAT78G2386 Cannabis sativa HOM05D001578 ORTHO05D001207 3.8e-09 65.1 119 32.8
CAN.G305.59 Capsicum annuum HOM05D001578 ORTHO05D001207 3.8e-09 65.1 105 37.1
RcHm_v2.0_Chr2g0143761 Rosa chinensis HOM05D001578 ORTHO05D001207 3.8e-09 65.1 104 39.4
RcHm_v2.0_Chr2g0144321 Rosa chinensis HOM05D001578 ORTHO05D001207 3.8e-09 65.1 104 39.4
RcHm_v2.0_Chr7g0200071 Rosa chinensis HOM05D001578 ORTHO05D001207 3.8e-09 65.1 104 39.4
SGA_v2.0_scaffold246G44798 Striga asiatica HOM05D001578 ORTHO05D001207 3.8e-09 65.1 109 34.9
CARHR088530 Cardamine hirsuta HOM05D001578 ORTHO05D001207 4.9e-09 64.7 108 35.2
Cc03_g00590 Coffea canephora HOM05D001578 ORTHO05D001207 4.9e-09 64.7 107 37.4
COL.COLO4_34578 Corchorus olitorius HOM05D001578 ORTHO05D001207 4.9e-09 64.7 109 36.7
Psat0s740g0160 Pisum sativum HOM05D001578 ORTHO05D001207 4.9e-09 64.7 84 34.5
CAN.G484.69 Capsicum annuum HOM05D001578 ORTHO05D001207 6.5e-09 64.3 109 35.8
Lj4g0009388 Lotus japonicus HOM05D001578 ORTHO05D001207 6.5e-09 64.3 111 31.5
MSTRG.24828 Avicennia marina HOM05D001578 ORTHO05D001207 8.4e-09 63.9 109 35.8
RcHm_v2.0_Chr4g0399701 Rosa chinensis HOM05D001578 ORTHO05D001207 8.4e-09 63.9 103 36.9
Duzib151G0695 Durio zibethinus HOM05D001578 ORTHO05D001207 1.1e-08 63.5 109 35.8
Lj1g0019408 Lotus japonicus HOM05D001578 ORTHO05D001207 1.1e-08 63.5 102 37.3
Thecc.08G179500 Theobroma cacao HOM05D001705 ORTHO05D008928 1.1e-08 63.5 111 33.3
BraA03t13160Z Brassica rapa HOM05D001578 ORTHO05D001207 1.4e-08 63.2 81 37.0
Peaxi162Scf01160g00112 Petunia axillaris HOM05D001578 ORTHO05D001207 2.5e-08 62.4 71 40.8
BcaC01g03784 Brassica carinata HOM05D001578 ORTHO05D001207 3.2e-08 62.0 86 34.9
FvH4_6g33790 Fragaria vesca HOM05D001578 ORTHO05D001207 3.2e-08 62.0 104 32.7
Duzib052G0195 Durio zibethinus HOM05D001578 ORTHO05D001207 4.2e-08 61.6 111 34.2
QL06p012826 Quercus lobata HOM05D001578 ORTHO05D001207 7.1e-08 60.8 109 33.0
BolC3t17145H Brassica oleracea HOM05D001578 ORTHO05D001207 9.3e-08 60.5 105 35.2
Gohir.A10G174100 Gossypium hirsutum HOM05D001578 ORTHO05D001207 9.3e-08 60.5 109 34.9
Gohir.D10G180700 Gossypium hirsutum HOM05D001578 ORTHO05D001207 9.3e-08 60.5 109 34.9
Gorai.011G202200 Gossypium raimondii HOM05D001578 ORTHO05D001207 9.3e-08 60.5 109 34.9
Lj1g0016642 Lotus japonicus HOM05D001578 ORTHO05D001207 9.3e-08 60.5 103 37.9
Eucgr.H04068 Eucalyptus grandis HOM05D001578 ORTHO05D001207 1.2e-07 60.1 87 40.2
Eucgr.L02840 Eucalyptus grandis HOM05D001578 ORTHO05D001207 1.2e-07 60.1 87 40.2
Lalb_Chr20g0117771 Lupinus albus HOM05D001578 ORTHO05D001207 2.7e-07 58.9 107 30.8
Gohir.A10G174050 Gossypium hirsutum HOM05D001578 ORTHO05D001207 3.5e-07 58.5 108 34.3
Thecc.04G304900 Theobroma cacao HOM05D001578 ORTHO05D001207 3.5e-07 58.5 109 33.0
Duzib151G0004 Durio zibethinus HOM05D001578 ORTHO05D001207 4.6e-07 58.2 107 32.7
Prupe.3G146800 Prunus persica HOM05D001578 ORTHO05D001207 6.0e-07 57.8 108 33.3
QL06p012837 Quercus lobata HOM05D001578 ORTHO05D001207 6.0e-07 57.8 109 29.4
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 7.9e-07 57.4 63 38.1
MD13G1150400 Malus domestica HOM05D001578 ORTHO05D001207 1.0e-06 57.0 107 27.1
CiPaw.01G135900 Carya illinoinensis HOM05D001578 ORTHO05D001207 1.3e-06 56.6 110 32.7
QL06p012845 Quercus lobata HOM05D001578 ORTHO05D001207 2.3e-06 55.8 109 29.4
Ah.08g216400 Amaranthus hybridus HOM05D001578 ORTHO05D001207 3.0e-06 55.5 109 32.1
FAN02G2223 Fragaria x ananassa HOM05D001578 ORTHO05D001207 3.0e-06 55.5 93 37.6
TPR.G25400 Trifolium pratense HOM05D001578 ORTHO05D001207 6.7e-06 54.3 53 39.6


User provided reference genes

Program Settings