Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu023547.1 Olea europaea HOM05D004919 ORTHO05D005994 1.6e-172 609.4 318 100.0
Oeu038486.1 Olea europaea HOM05D004919 ORTHO05D005994 6.6e-142 507.7 318 85.5
Cc00_g18770 Coffea canephora HOM05D004919 ORTHO05D005994 3.3e-93 345.9 324 60.5
Nitab4.5_0004612g0040 Nicotiana tabacum HOM05D004919 ORTHO05D005994 2.1e-92 343.2 319 60.5
Migut.D02060 Erythranthe guttata HOM05D004919 ORTHO05D005994 2.8e-92 342.8 338 60.1
MSTRG.9710 Avicennia marina HOM05D004919 ORTHO05D005994 6.9e-91 338.2 334 59.0
SalBow8G2727 Salvia bowleyana HOM05D004919 ORTHO05D005994 6.9e-91 338.2 317 61.8
PGSC0003DMG400010158 Solanum tuberosum HOM05D004919 ORTHO05D005994 2.0e-90 336.7 320 58.4
Nitab4.5_0000782g0200 Nicotiana tabacum HOM05D004919 ORTHO05D005994 3.4e-90 335.9 319 59.2
Peaxi162Scf00171g00315 Petunia axillaris HOM05D004919 ORTHO05D005994 7.6e-90 334.7 319 59.6
CAN.G1909.1 Capsicum annuum HOM05D004919 ORTHO05D005994 1.3e-89 334.0 328 57.3
CAN.G65.77 Capsicum annuum HOM05D004919 ORTHO05D005994 6.4e-89 331.6 311 59.5
Solyc03g098450.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 2.7e-87 326.2 320 57.5
Sopen03g029190 Solanum pennellii HOM05D004919 ORTHO05D005994 6.0e-87 325.1 320 57.2
PGSC0003DMG400027049 Solanum tuberosum HOM05D004919 ORTHO05D005994 3.9e-86 322.4 310 58.1
SGA_v2.0_scaffold335G49119 Striga asiatica HOM05D004919 ORTHO05D003750 1.5e-85 320.5 323 58.8
Solyc06g072290.3 Solanum lycopersicum HOM05D004919 ORTHO05D005994 2.1e-84 316.6 310 57.4
MSTRG.4322 Avicennia marina HOM05D004919 ORTHO05D005994 3.7e-84 315.8 319 59.9
Peaxi162Scf00643g00061 Petunia axillaris HOM05D004919 ORTHO05D005994 1.5e-82 310.5 315 59.4
Sopen06g028660 Solanum pennellii HOM05D004919 ORTHO05D005994 1.0e-81 307.8 305 56.7
Oeu061193.1 Olea europaea HOM05D004919 ORTHO05D005994 7.9e-79 298.1 308 55.8
DCAR_013999 Daucus carota HOM05D004919 ORTHO05D005994 5.1e-78 295.4 323 54.2
unitig_37.g12835 Utricularia gibba HOM05D004919 ORTHO05D005994 8.7e-78 294.7 310 56.1
Nn4g24904 Nelumbo nucifera HOM05D004919 ORTHO05D005994 9.0e-75 284.6 321 53.3
QL03p069496 Quercus lobata HOM05D004919 ORTHO05D005994 3.4e-74 282.7 314 54.1
DCAR_010223 Daucus carota HOM05D004919 ORTHO05D005994 5.9e-74 282.0 331 52.3
MD06G1238400 Malus domestica HOM05D004919 ORTHO05D005994 8.5e-73 278.1 331 49.8
Lj9C413T11 Lonicera japonica HOM05D004919 ORTHO05D005994 5.5e-72 275.4 327 54.1
TAR622G0944 Trochodendron aralioides HOM05D004919 ORTHO05D005994 1.2e-71 274.2 309 50.5
CsaV3_1G005110 Cucumis sativus L. HOM05D004919 ORTHO05D005994 7.9e-71 271.6 310 52.9
Eucgr.K02309 Eucalyptus grandis HOM05D004919 ORTHO05D005994 1.4e-70 270.8 320 50.0
CiPaw.16G072100 Carya illinoinensis HOM05D004919 ORTHO05D005994 3.0e-70 269.6 307 49.8
Hma1.2p1_0983F.1_g244060 Hydrangea macrophylla HOM05D004919 ORTHO05D005994 3.0e-70 269.6 342 51.5
MELO3C001949.2 Cucumis melo HOM05D004919 ORTHO05D005994 2.5e-69 266.5 307 51.1
MD14G1244700 Malus domestica HOM05D004919 ORTHO05D005994 2.5e-69 266.5 329 48.6
Prupe.5G242300 Prunus persica HOM05D004919 ORTHO05D005994 5.7e-69 265.4 330 50.3
Phvul.004G141900 Phaseolus vulgaris HOM05D004919 ORTHO05D005994 7.4e-69 265.0 320 49.7
Haze_18425 Corylus avellana HOM05D004919 ORTHO05D005994 1.3e-68 264.2 309 54.7
Aqoxy3G04241 Aquilegia oxysepala HOM05D004919 ORTHO05D005994 2.2e-68 263.5 324 49.7
Glyma.16G216300 Glycine max HOM05D004919 ORTHO05D005994 2.2e-68 263.5 323 49.5
TPR.G24055 Trifolium pratense HOM05D004919 ORTHO05D005994 3.7e-68 262.7 317 49.8
Actinidia34660 Actinidia chinensis HOM05D004919 ORTHO05D005994 6.3e-68 261.9 313 52.1
VMungo0464G0748 Vigna mungo HOM05D004919 ORTHO05D005994 6.3e-68 261.9 320 49.7
Psat1g120680 Pisum sativum HOM05D004919 ORTHO05D005994 8.2e-68 261.5 319 48.6
AUR62033077 Chenopodium quinoa HOM05D004919 ORTHO05D005994 1.8e-67 260.4 320 48.4
AUR62034040 Chenopodium quinoa HOM05D004919 ORTHO05D005994 5.3e-67 258.8 320 48.8
Sed0023393 Sechium edule HOM05D004919 ORTHO05D005994 5.3e-67 258.8 302 48.3
ClCG04G012590 Citrullus lanatus HOM05D004919 ORTHO05D005994 9.1e-67 258.1 306 49.7
MBI03_g05108_MAGBIO Magnolia biondii HOM05D004919 ORTHO05D005994 1.2e-66 257.7 298 51.7
Glyma.09G166300 Glycine max HOM05D004919 ORTHO05D005994 2.6e-66 256.5 322 46.3
Ca_00018_v3 Cicer arietinum L. HOM05D004919 ORTHO05D005994 3.4e-66 256.1 316 48.4
Cfa017790 Carpinus fangiana HOM05D004919 ORTHO05D005994 4.5e-66 255.8 306 51.6
PSO782G5234 Papaver somniferum HOM05D004919 ORTHO05D005994 7.7e-66 255.0 316 49.4
EL10Ac8g19437 Beta vulgaris HOM05D004919 ORTHO05D005994 1.0e-65 254.6 327 47.7
PSO063G6227 Papaver somniferum HOM05D004919 ORTHO05D005994 2.2e-65 253.4 320 50.0
Medtr6g081040 Medicago truncatula HOM05D004919 ORTHO05D005994 5.0e-65 252.3 318 49.7
Lj5P166T67 Lonicera japonica HOM05D004919 ORTHO05D005994 1.1e-64 251.1 243 59.3
Lj2g0012075 Lotus japonicus HOM05D004919 ORTHO05D005994 2.5e-64 250.0 320 47.5
GSVIVG01029368001 Vitis vinifera HOM05D004919 ORTHO05D005994 1.6e-63 247.3 329 51.7
PGR044G0656 Punica granatum HOM05D004919 ORTHO05D005994 2.7e-63 246.5 318 48.1
RcHm_v2.0_Chr7g0177301 Rosa chinensis HOM05D004919 ORTHO05D005994 4.7e-63 245.7 339 47.2
Hund22396 Selenicereus undatus HOM05D004919 ORTHO05D005994 4.7e-63 245.7 297 49.2
DCAR_023254 Daucus carota HOM05D004919 ORTHO05D005994 1.8e-62 243.8 304 49.7
FAN18G2684 Fragaria x ananassa HOM05D004919 ORTHO05D005994 3.9e-62 242.7 335 47.2
Lalb_Chr22g0353861 Lupinus albus HOM05D004919 ORTHO05D005994 3.9e-62 242.7 319 46.4
Lalb_Chr24g0398491 Lupinus albus HOM05D004919 ORTHO05D005994 3.9e-62 242.7 320 47.2
FvH4_5g18280 Fragaria vesca HOM05D004919 ORTHO05D005994 8.8e-62 241.5 335 46.9
FAN04G2831 Fragaria x ananassa HOM05D004919 ORTHO05D005994 2.0e-61 240.4 327 46.8
FAN13G3100 Fragaria x ananassa HOM05D004919 ORTHO05D005994 2.6e-61 240.0 334 46.4
FAN08G0951 Fragaria x ananassa HOM05D004919 ORTHO05D005994 5.7e-61 238.8 331 46.2
Potri.015G030100 Populus trichocarpa HOM05D004919 ORTHO05D005994 1.3e-60 237.7 326 47.9
arahy.Tifrunner.gnm1.ann1.C1QDUR Arachis hypogaea HOM05D004919 ORTHO05D005994 2.8e-60 236.5 332 45.8
arahy.Tifrunner.gnm1.ann1.SE8RA9 Arachis hypogaea HOM05D004919 ORTHO05D005994 6.3e-60 235.3 340 45.3
Potri.012G038000 Populus trichocarpa HOM05D004919 ORTHO05D005994 1.5e-58 230.7 327 47.7
TWI60G1404 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 2.0e-58 230.3 312 45.2
CANSAT01G3029 Cannabis sativa HOM05D004919 ORTHO05D005994 3.5e-58 229.6 333 45.6
arahy.Tifrunner.gnm1.ann1.03EXEF Arachis hypogaea HOM05D004919 ORTHO05D005994 1.3e-57 227.6 327 44.6
arahy.Tifrunner.gnm1.ann1.UCE8LX Arachis hypogaea HOM05D004919 ORTHO05D005994 1.3e-57 227.6 338 44.1
Nitab4.5_0002049g0020 Nicotiana tabacum HOM05D004919 ORTHO05D005994 3.8e-57 226.1 233 56.7
PGR083G2189 Punica granatum HOM05D004919 ORTHO05D005994 5.0e-57 225.7 313 45.4
Dinv06632 Davidia involucrata HOM05D004919 ORTHO05D005994 8.5e-57 224.9 322 47.8
CDE05G0351 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 2.3e-54 216.9 312 42.6
CDE05G3589 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 3.9e-54 216.1 313 42.2
Ciclev10020883m.g Citrus clementina HOM05D004919 ORTHO05D005994 3.9e-54 216.1 316 44.3
Sabra12G0026400 Salix brachista HOM05D004919 ORTHO05D005994 1.5e-53 214.2 328 45.7
TWI81G0707 Tripterygium wilfordii HOM05D004919 ORTHO05D005994 5.7e-53 212.2 302 42.7
SGA_v2.0_scaffold164G38115 Striga asiatica HOM05D004919 ORTHO05D005994 9.7e-53 211.5 276 51.4
unitig_0.g27 Utricularia gibba HOM05D004919 ORTHO05D005994 1.3e-52 211.1 297 47.5
Atru.chr9.355 Acer truncatum HOM05D004919 ORTHO05D005994 1.7e-52 210.7 306 45.1
Sabra15G0025100 Salix brachista HOM05D004919 ORTHO05D005994 4.5e-50 202.6 320 44.7
Lj9A350G57 Lonicera japonica HOM05D004919 ORTHO05D005994 1.5e-48 197.6 200 58.5
Lsat_1_v5_gn_8_31480 Lactuca sativa HOM05D004919 ORTHO05D005994 1.9e-48 197.2 350 38.9
Manes.02G214000 Manihot esculenta HOM05D004919 ORTHO05D005994 2.5e-48 196.8 265 47.5
ECA233G1753 Erigeron canadensis HOM05D004919 ORTHO05D005994 2.1e-47 193.7 345 42.0
MBI03_g34782_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D000111 6.1e-47 192.2 299 44.8
HPP92_008286 Vanilla planifolia HOM05D004919 ORTHO05D005994 1.7e-44 184.1 232 44.8
Cpa.g.sc111.44 Carica papaya HOM05D004919 ORTHO05D005994 1.2e-42 177.9 301 38.2
ATR0618G253 Amborella trichopoda HOM05D004919 ORTHO05D005994 7.7e-42 175.3 257 40.9
Os03g0110500 Oryza sativa ssp. japonica HOM05D004919 ORTHO05D005994 1.3e-41 174.5 252 46.0
HanXRQChr13g0387291 Helianthus annuus HOM05D004919 ORTHO05D005994 4.2e-40 169.5 259 43.2
HanXRQChr12g0367661 Helianthus annuus HOM05D004919 ORTHO05D005994 5.5e-40 169.1 343 37.6
Lj1g0019516 Lotus japonicus HOM05D004919 ORTHO05D005994 5.2e-38 162.5 216 44.0
Zm00001eb404190 Zea mays HOM05D004919 ORTHO05D005994 3.4e-37 159.8 249 43.8
CDE04G0293 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 1.6e-34 151.0 235 40.0
CDE02G0066 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 1.7e-28 131.0 292 37.3
CARHR038020 Cardamine hirsuta HOM05D004919 ORTHO05D005994 2.2e-28 130.6 254 33.5
Sp1g35340 Schrenkiella parvula HOM05D004919 ORTHO05D005994 8.3e-28 128.6 234 33.3
Aa31LG8G4550 Aethionema arabicum HOM05D004919 ORTHO05D005994 5.9e-26 122.5 269 34.2
PGSC0003DMG400021951 Solanum tuberosum HOM05D004919 ORTHO05D005994 1.0e-25 121.7 267 34.8
BcaB07g33762 Brassica carinata HOM05D004919 ORTHO05D005994 1.7e-25 120.9 250 33.2
Thhalv10021085m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 1.7e-25 120.9 275 37.1
Sp3g15820 Schrenkiella parvula HOM05D004919 ORTHO05D005994 3.9e-25 119.8 249 35.3
BcaB06g25821 Brassica carinata HOM05D004919 ORTHO05D005994 5.0e-25 119.4 253 34.4
Carub.0003s1741 Capsella rubella HOM05D004919 ORTHO05D005994 5.0e-25 119.4 242 37.6
AL1G55030 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 1.5e-24 117.9 253 32.8
BcaB06g25823 Brassica carinata HOM05D004919 ORTHO05D005994 1.5e-24 117.9 255 34.5
C05p48710 Brassica napus HOM05D004919 ORTHO05D005994 1.5e-24 117.9 255 34.5
BolC5t33607H Brassica oleracea HOM05D004919 ORTHO05D005994 1.5e-24 117.9 255 34.5
BraA05t22046Z Brassica rapa HOM05D004919 ORTHO05D005994 1.5e-24 117.9 253 34.4
AT3G17680 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 3.3e-24 116.7 245 37.1
A05p32170 Brassica napus HOM05D004919 ORTHO05D005994 5.6e-24 115.9 240 35.8
AL3G30800 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 7.3e-24 115.5 245 37.6
Carub.0001s3752 Capsella rubella HOM05D004919 ORTHO05D005994 9.5e-24 115.2 252 32.9
CARHR093030 Cardamine hirsuta HOM05D004919 ORTHO05D005994 9.5e-24 115.2 274 32.8
C08p05110 Brassica napus HOM05D004919 ORTHO05D005994 2.1e-23 114.0 226 33.2
BolC8t47321H Brassica oleracea HOM05D004919 ORTHO05D005994 2.1e-23 114.0 226 33.2
Thhalv10012064m.g Eutrema salsugineum HOM05D004919 ORTHO05D005994 2.8e-23 113.6 234 31.6
BcaC07g37137 Brassica carinata HOM05D004919 ORTHO05D005994 6.1e-23 112.5 226 32.7
A08p04740 Brassica napus HOM05D004919 ORTHO05D005994 2.3e-22 110.5 226 31.4
BraA08t32503Z Brassica rapa HOM05D004919 ORTHO05D005994 3.1e-22 110.2 226 31.9
AT1G48405 Arabidopsis thaliana HOM05D004919 ORTHO05D005994 8.9e-22 108.6 253 32.4
A06p04510 Brassica napus HOM05D004919 ORTHO05D005994 1.1e-16 91.7 250 29.6
BraA06t23655Z Brassica rapa HOM05D004919 ORTHO05D005994 1.1e-16 91.7 250 29.6
BcaB04g17432 Brassica carinata HOM05D004919 ORTHO05D005994 2.5e-16 90.5 186 32.3
BcaB04g18959 Brassica carinata HOM05D004919 ORTHO05D005994 3.4e-13 80.1 136 39.7
C06p02850 Brassica napus HOM05D004919 ORTHO05D005994 7.5e-13 79.0 182 33.5
C06p02890 Brassica napus HOM05D004919 ORTHO05D005994 7.5e-13 79.0 182 33.5
Solyc09g018970.1 Solanum lycopersicum HOM05D004919 ORTHO05D005994 7.5e-13 79.0 130 41.5
C06p02940 Brassica napus HOM05D004919 ORTHO05D005994 2.2e-12 77.4 180 33.3
AL1G55008 Arabidopsis lyrata HOM05D004919 ORTHO05D005994 4.9e-12 76.3 148 33.8
BcaB04g17430 Brassica carinata HOM05D004919 ORTHO05D005994 1.1e-11 75.1 174 29.9
Aa31LG10G5370 Aethionema arabicum HOM05D004919 ORTHO05D005994 1.2e-10 71.6 225 28.4
C03p49080 Brassica napus HOM05D004919 ORTHO05D005994 1.5e-08 64.7 132 35.6
BolC3t17188H Brassica oleracea HOM05D004919 ORTHO05D005994 1.5e-08 64.7 132 35.6
BolC6t35415H Brassica oleracea HOM05D004919 ORTHO05D005994 1.2e-07 61.6 147 32.7
BolC6t35416H Brassica oleracea HOM05D004919 ORTHO05D005994 1.2e-07 61.6 147 32.7
BcaC08g43034 Brassica carinata HOM05D004919 ORTHO05D005994 4.7e-07 59.7 147 32.0
Sc26g0002290 Simmondsia chinensis HOM05D000592 ORTHO05D000900 5.2e-06 56.2 41 58.5
BcaC01g03740 Brassica carinata HOM05D004919 ORTHO05D005994 6.8e-06 55.8 86 37.2
THA.LOC104826013 Tarenaya hassleriana HOM05D000592 ORTHO05D000900 6.8e-06 55.8 39 61.5


User provided reference genes

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