Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu022870.1 Olea europaea HOM05D005096 ORTHO05D006566 0.0e+00 1758.0 927 100.0
Migut.D00294 Erythranthe guttata HOM05D005096 ORTHO05D006566 0.0e+00 1256.9 930 71.8
SalBow4G0282 Salvia bowleyana HOM05D005096 ORTHO05D006566 0.0e+00 1194.9 927 69.1
MSTRG.21562 Avicennia marina HOM05D005096 ORTHO05D006566 0.0e+00 1175.6 932 68.7
Dinv32937 Davidia involucrata HOM05D005096 ORTHO05D006566 0.0e+00 1165.6 931 68.2
CSS0045500 Camellia sinensis var. sinensis HOM05D005096 ORTHO05D006566 0.0e+00 1139.0 927 66.6
Actinidia09139 Actinidia chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1136.3 930 66.2
Actinidia00750 Actinidia chinensis HOM05D005096 ORTHO05D006566 0.0e+00 1132.5 934 66.5
Lj2A1173G9 Lonicera japonica HOM05D005096 ORTHO05D006566 0.0e+00 1125.2 873 68.4
Nitab4.5_0000458g0050 Nicotiana tabacum HOM05D005096 ORTHO05D006566 0.0e+00 1082.4 890 65.8
Nitab4.5_0008435g0030 Nicotiana tabacum HOM05D005096 ORTHO05D006566 0.0e+00 1076.2 890 65.4
GSVIVG01011085001 Vitis vinifera HOM05D005096 ORTHO05D006566 2.5e-311 1072.0 939 61.9
vmacro02569 Vaccinium macrocarpon HOM05D005096 ORTHO05D006566 8.2e-310 1067.0 924 63.6
Rhsim13G0024600 Rhododendron simsii HOM05D005096 ORTHO05D006566 4.1e-309 1064.7 902 64.6
Peaxi162Scf01607g00116 Petunia axillaris HOM05D005096 ORTHO05D006566 1.3e-307 1059.7 941 63.0
Cfa006136 Carpinus fangiana HOM05D005096 ORTHO05D006566 1.1e-306 1056.6 924 62.1
QL12p021914 Quercus lobata HOM05D005096 ORTHO05D006566 1.2e-305 1053.1 915 62.3
TAR633G0362 Trochodendron aralioides HOM05D005096 ORTHO05D006566 4.6e-305 1051.2 913 62.4
Sopen09g026860 Solanum pennellii HOM05D005096 ORTHO05D006566 3.3e-303 1045.0 913 63.3
Prupe.8G241300 Prunus persica HOM05D005096 ORTHO05D006566 3.7e-302 1041.6 887 62.7
Atru.chr5.1434 Acer truncatum HOM05D005096 ORTHO05D006566 8.2e-302 1040.4 927 60.8
Haze_04712 Corylus avellana HOM05D005096 ORTHO05D006566 8.2e-302 1040.4 963 60.0
Duzib138G0773 Durio zibethinus HOM05D005096 ORTHO05D006566 1.1e-301 1040.0 930 61.7
Sabra05G0159300 Salix brachista HOM05D005096 ORTHO05D006566 1.0e-299 1033.5 930 60.8
COL.COLO4_09099 Corchorus olitorius HOM05D005096 ORTHO05D006566 2.9e-299 1031.9 923 61.2
ECA247G0546 Erigeron canadensis HOM05D005096 ORTHO05D006566 2.5e-298 1028.9 862 63.5
RcHm_v2.0_Chr6g0291071 Rosa chinensis HOM05D005096 ORTHO05D006566 3.2e-298 1028.5 929 60.1
Cc01_g19500 Coffea canephora HOM05D005096 ORTHO05D006566 9.4e-298 1026.9 917 62.1
Thecc.01G279600 Theobroma cacao HOM05D005096 ORTHO05D006566 2.7e-297 1025.4 929 61.0
CiPaw.07G091400 Carya illinoinensis HOM05D005096 ORTHO05D006566 3.0e-296 1021.9 890 61.7
HanXRQChr10g0282661 Helianthus annuus HOM05D005096 ORTHO05D006566 2.6e-295 1018.8 878 62.1
Ciclev10023868m.g Citrus clementina HOM05D005096 ORTHO05D006566 4.4e-295 1018.1 884 63.0
Manes.05G076137 Manihot esculenta HOM05D005096 ORTHO05D006566 7.4e-295 1017.3 913 61.0
Potri.005G209200 Populus trichocarpa HOM05D005096 ORTHO05D006566 7.4e-295 1017.3 932 59.8
Lsat_1_v5_gn_9_3760 Lactuca sativa HOM05D005096 ORTHO05D006566 2.2e-294 1015.8 887 62.1
FAN15G1882 Fragaria x ananassa HOM05D005096 ORTHO05D006566 2.8e-294 1015.4 922 59.3
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 1.4e-293 1013.1 925 60.4
FAN27G2515 Fragaria x ananassa HOM05D005096 ORTHO05D006566 7.0e-293 1010.7 922 59.1
MD11G1286100 Malus domestica HOM05D005096 ORTHO05D006566 2.0e-292 1009.2 887 61.1
DCAR_002736 Daucus carota HOM05D005096 ORTHO05D006566 2.6e-292 1008.8 934 60.5
TWI23G0916 Tripterygium wilfordii HOM05D005096 ORTHO05D006566 2.6e-292 1008.8 900 61.4
FvH4_2g23600 Fragaria vesca HOM05D005096 ORTHO05D006566 4.5e-292 1008.1 919 59.0
FAN20G2556 Fragaria x ananassa HOM05D005096 ORTHO05D006566 7.7e-292 1007.3 903 59.9
SGA_v2.0_scaffold1G00471 Striga asiatica HOM05D005096 ORTHO05D006566 7.7e-292 1007.3 929 62.3
CAN.G242.2 Capsicum annuum HOM05D005096 ORTHO05D006566 3.2e-290 1001.9 897 62.1
Aqoxy2G03326 Aquilegia oxysepala HOM05D005096 ORTHO05D006566 2.1e-289 999.2 902 60.2
TPR.G9125 Trifolium pratense HOM05D005096 ORTHO05D006566 7.5e-287 990.7 866 59.9
Gorai.004G080200 Gossypium raimondii HOM05D005096 ORTHO05D006566 3.7e-286 988.4 930 58.9
Lj5g0021757 Lotus japonicus HOM05D005096 ORTHO05D006566 3.7e-286 988.4 880 60.5
Duzib133G0542 Durio zibethinus HOM05D005096 ORTHO05D006566 8.2e-286 987.3 892 60.3
ClCG07G000240 Citrullus lanatus HOM05D005096 ORTHO05D006566 1.8e-285 986.1 929 58.4
Ca_09758_v3 Cicer arietinum L. HOM05D005096 ORTHO05D006566 3.5e-284 981.9 922 57.6
Hund05342 Selenicereus undatus HOM05D005096 ORTHO05D006566 4.5e-284 981.5 910 58.5
CsaV3_6G037120 Cucumis sativus L. HOM05D005096 ORTHO05D006566 2.2e-283 979.2 927 57.8
Medtr1g072270 Medicago truncatula HOM05D005096 ORTHO05D006566 3.2e-282 975.3 885 58.6
Glyma.02G147400 Glycine max HOM05D005096 ORTHO05D006566 3.6e-281 971.8 913 58.8
CANSAT25G0791 Cannabis sativa HOM05D005096 ORTHO05D006566 4.7e-281 971.5 938 57.8
arahy.Tifrunner.gnm1.ann1.2R7T4K Arachis hypogaea HOM05D005096 ORTHO05D006566 3.0e-280 968.8 926 56.9
VMungo0720G0024 Vigna mungo HOM05D005096 ORTHO05D006566 3.4e-279 965.3 918 58.0
Phvul.007G172000 Phaseolus vulgaris HOM05D005096 ORTHO05D006566 9.8e-279 963.8 918 58.0
Glyma.10G026400 Glycine max HOM05D005096 ORTHO05D006566 4.8e-278 961.4 915 58.0
Sc05g0004960 Simmondsia chinensis HOM05D005096 ORTHO05D006566 1.1e-277 960.3 863 59.1
Gohir.D08G075900 Gossypium hirsutum HOM05D005096 ORTHO05D006566 6.5e-275 951.0 930 57.5
FAN24G2260 Fragaria x ananassa HOM05D005096 ORTHO05D006566 1.6e-273 946.4 919 56.5
EL10Ac7g17230 Beta vulgaris HOM05D005096 ORTHO05D006566 1.2e-271 940.3 928 55.9
arahy.Tifrunner.gnm1.ann1.TN9YNV Arachis hypogaea HOM05D005096 ORTHO05D006566 2.6e-271 939.1 991 53.3
Ah.15g091940 Amaranthus hybridus HOM05D005096 ORTHO05D006566 1.7e-270 936.4 913 56.7
THA.LOC104801235 Tarenaya hassleriana HOM05D005096 ORTHO05D006566 9.2e-269 930.6 867 57.8
AL1G12650 Arabidopsis lyrata HOM05D005096 ORTHO05D006566 1.0e-267 927.2 921 55.7
Sed0025205 Sechium edule HOM05D005096 ORTHO05D006566 2.3e-267 926.0 867 58.1
Sp1g02185 Schrenkiella parvula HOM05D005096 ORTHO05D006566 4.3e-266 921.8 899 56.2
Carub.0001s0230 Capsella rubella HOM05D005096 ORTHO05D006566 8.0e-265 917.5 920 55.5
C08p00440 Brassica napus HOM05D005096 ORTHO05D006566 1.4e-264 916.8 906 56.7
Thhalv10006729m.g Eutrema salsugineum HOM05D005096 ORTHO05D006566 5.2e-264 914.8 920 55.1
CARHR002500 Cardamine hirsuta HOM05D005096 ORTHO05D006566 3.4e-263 912.1 916 55.3
BolC8t46843H Brassica oleracea HOM05D005096 ORTHO05D006566 6.4e-262 907.9 899 56.3
A08p37450 Brassica napus HOM05D005096 ORTHO05D006566 1.4e-261 906.7 906 56.4
BraA08t35643Z Brassica rapa HOM05D005096 ORTHO05D006566 1.4e-261 906.7 906 56.4
ATR0626G051 Amborella trichopoda HOM05D005096 ORTHO05D006566 2.3e-259 899.4 899 55.1
MBI19_g21295_MAGBIO Magnolia biondii HOM05D005096 ORTHO05D006566 1.5e-258 896.7 815 60.7
Aa31LG1G9370 Aethionema arabicum HOM05D005096 ORTHO05D006566 3.4e-255 885.6 916 54.4
PSO170G0567 Papaver somniferum HOM05D005096 ORTHO05D006566 1.9e-253 879.8 906 55.3
AUR62036827 Chenopodium quinoa HOM05D005096 ORTHO05D006566 4.6e-252 875.2 952 51.7
PSO302G0140 Papaver somniferum HOM05D005096 ORTHO05D006566 1.0e-251 874.0 906 55.4
Psat6g060000 Pisum sativum HOM05D005096 ORTHO05D006566 1.0e-251 874.0 813 58.2
Solyc09g065160.4 Solanum lycopersicum HOM05D005096 ORTHO05D006566 2.0e-247 859.8 780 61.5
AUR62043137 Chenopodium quinoa HOM05D005096 ORTHO05D006566 1.0e-243 847.4 867 53.7
Hma1.2p1_0257F.1_g103450 Hydrangea macrophylla HOM05D005096 ORTHO05D006566 6.6e-243 844.7 653 70.4
PGR119G0033 Punica granatum HOM05D005096 ORTHO05D006566 6.8e-240 834.7 792 58.1
CDE06G0317 Ceratophyllum demersum HOM05D005096 ORTHO05D006566 8.9e-240 834.3 878 53.9
HPP92_012091 Vanilla planifolia HOM05D003650 ORTHO05D004213 1.2e-239 833.9 862 52.9
Eucgr.H01482 Eucalyptus grandis HOM05D005096 ORTHO05D006566 2.4e-237 826.2 751 58.3
Gohir.A08G067500 Gossypium hirsutum HOM05D005096 ORTHO05D006566 4.3e-234 815.5 798 56.8
Os05g0390100 Oryza sativa ssp. japonica HOM05D005096 ORTHO05D006566 7.9e-220 768.1 802 52.2
Duzib133G0424 Durio zibethinus HOM05D005096 ORTHO05D006566 8.5e-198 694.9 551 65.5
AT1G03160 Arabidopsis thaliana HOM05D005096 ORTHO05D006566 1.2e-196 691.0 698 55.9
Lalb_Chr02g0142781 Lupinus albus HOM05D005096 ORTHO05D006566 2.2e-185 653.7 551 60.6
Zm00001eb287190 Zea mays HOM05D005096 ORTHO05D006566 5.5e-181 639.0 609 54.4
Mapoly0002s0267 Marchantia polymorpha HOM05D005096 ORTHO05D006566 2.0e-175 620.5 886 41.4
Pp3c3_25850 Physcomitrium patens HOM05D005096 ORTHO05D006566 4.5e-175 619.4 911 41.2
AagrBONN_evm.TU.Sc2ySwM_228.961 Anthoceros agrestis HOM05D005096 ORTHO05D006566 1.0e-174 618.2 895 41.9
Pp3c10_17390 Physcomitrium patens HOM05D005096 ORTHO05D006566 8.5e-174 615.1 887 40.8
MD11G1312200 Malus domestica HOM05D005096 ORTHO05D006566 8.5e-166 588.6 714 49.9
MELO3C014401.2 Cucumis melo HOM05D005096 ORTHO05D006566 8.3e-161 572.0 477 61.6
Sabra02G0043400 Salix brachista HOM05D005096 ORTHO05D006566 9.8e-154 548.5 805 43.6
SMO147G0152 Selaginella moellendorffii HOM05D005096 ORTHO05D006566 4.9e-145 519.6 922 36.8
MD11G1311700 Malus domestica HOM05D005096 ORTHO05D006566 1.2e-119 435.3 481 52.4
Hund05386 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.6e-108 398.3 413 56.2
PRCOL_00001755 Prasinoderma coloniale HOM05D005096 ORTHO05D006566 6.9e-107 392.9 915 30.9
CBR_g4009 Chara braunii HOM05D005096 ORTHO05D006566 1.2e-106 392.1 990 32.7
MELO3C014400.2 Cucumis melo HOM05D005096 ORTHO05D008790 9.3e-104 382.5 430 53.3
Cre14.g616600 Chlamydomonas reinhardtii HOM05D005096 ORTHO05D006566 2.8e-100 370.9 978 30.0
AUR62043139 Chenopodium quinoa HOM05D005096 ORTHO05D006566 3.4e-98 364.0 350 53.7
AUR62043138 Chenopodium quinoa HOM05D005096 ORTHO05D006566 7.1e-96 356.3 428 50.2
Migut.D00341 Erythranthe guttata HOM05D005096 ORTHO05D006566 1.2e-95 355.5 475 49.7
Cpa.g.sc52.38 Carica papaya HOM05D005096 ORTHO05D006566 8.2e-92 342.8 312 58.0
MCO02G198 Micromonas commoda HOM05D005096 ORTHO05D006566 1.0e-86 325.9 956 28.5
Cpa.g.c40412 Carica papaya HOM05D005096 ORTHO05D006566 2.3e-86 324.7 292 57.5
Lalb_Chr02g0142771 Lupinus albus HOM05D005096 ORTHO05D006566 7.9e-79 299.7 353 52.1
Cpa.g.c38803 Carica papaya HOM05D005096 ORTHO05D006566 3.0e-70 271.2 268 55.2
MD11G1311600 Malus domestica HOM05D005096 ORTHO05D006566 7.7e-66 256.5 215 63.3
Hund05340 Selenicereus undatus HOM05D005096 ORTHO05D006566 1.7e-60 238.8 183 65.0
Potri.002G053332 Populus trichocarpa HOM05D005096 ORTHO05D006566 4.1e-59 234.2 257 51.0
MD11G1311400 Malus domestica HOM05D005096 ORTHO05D006566 2.3e-54 218.4 397 40.6
Sabra05G0150000 Salix brachista HOM05D005096 ORTHO05D006566 8.2e-52 209.9 160 65.6
SEGI_13636 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 3.5e-50 204.5 269 42.0
SEGI_14404 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 3.5e-50 204.5 386 38.3
Potri.002G053366 Populus trichocarpa HOM05D005096 ORTHO05D006566 4.0e-46 191.0 193 53.4
Cpa.g.c44243 Carica papaya HOM05D005096 ORTHO05D006566 7.7e-42 176.8 132 67.4
arahy.Tifrunner.gnm1.ann1.VTSW9N Arachis hypogaea HOM05D005096 ORTHO05D006566 1.3e-36 159.5 155 55.5
MD00G1063200 Malus domestica HOM05D005096 ORTHO05D006566 3.1e-35 154.8 126 65.9
SEGI_20481 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 5.4e-35 154.1 181 47.0
Cpa.g.sc370.1 Carica papaya HOM05D005096 ORTHO05D006566 1.1e-32 146.4 143 64.3
PGSC0003DMG400012881 Solanum tuberosum HOM05D005096 ORTHO05D006566 1.5e-32 146.0 169 54.4
Glyma.18G167550 Glycine max HOM05D005096 ORTHO05D006566 3.6e-31 141.4 94 74.5
TAR362G0796 Trochodendron aralioides HOM05D005096 ORTHO05D006566 5.2e-30 137.5 102 68.6
Hund05341 Selenicereus undatus HOM05D005096 ORTHO05D006566 2.1e-18 99.0 62 83.9
SEGI_37612 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 2.7e-18 98.6 197 29.9
arahy.Tifrunner.gnm1.ann1.X3UYKF Arachis hypogaea HOM05D005525 ORTHO05D006341 1.1e-16 93.2 148 41.9
arahy.Tifrunner.gnm1.ann1.K3B567 Arachis hypogaea HOM05D005525 ORTHO05D006341 9.5e-16 90.1 172 39.5
arahy.Tifrunner.gnm1.ann1.BB9JSJ Arachis hypogaea HOM05D000384 ORTHO05D000468 2.1e-15 89.0 91 53.8
arahy.Tifrunner.gnm1.ann1.Y3S9ZW Arachis hypogaea HOM05D005525 ORTHO05D006341 8.9e-14 83.6 169 37.3
SEGI_24308 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 4.4e-13 81.3 58 67.2
SEGI_40401 Sequoiadendron giganteum HOM05D005096 ORTHO05D006566 4.9e-12 77.8 106 45.3
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 2.1e-10 72.4 68 58.8
MD11G1311300 Malus domestica HOM05D005096 ORTHO05D006566 2.8e-07 62.0 69 55.1
arahy.Tifrunner.gnm1.ann1.8W9TWR Arachis hypogaea HOM05D005096 ORTHO05D006566 4.0e-06 58.2 60 46.7


User provided reference genes

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