Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 1.3e-45 186.0 98 100.0
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 9.4e-23 110.2 107 63.6
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 4.7e-22 107.8 105 66.7
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 4.7e-22 107.8 108 64.8
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 4.7e-22 107.8 105 66.7
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 5.2e-21 104.4 109 60.6
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 6.7e-21 104.0 111 57.7
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 1.1e-20 103.2 109 59.6
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 1.1e-20 103.2 109 60.6
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.5e-20 102.8 108 63.0
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 5.7e-20 100.9 100 57.0
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 7.4e-20 100.5 109 58.7
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 7.4e-20 100.5 109 58.7
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 2.8e-19 98.6 105 58.1
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 2.8e-19 98.6 105 58.1
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 4.8e-19 97.8 105 51.4
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 8.2e-19 97.1 109 58.7
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 1.1e-18 96.7 105 60.0
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 1.4e-18 96.3 105 58.1
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 1.4e-18 96.3 105 58.1
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 1.8e-18 95.9 105 55.2
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 4.1e-18 94.7 107 56.1
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 4.1e-18 94.7 97 56.7
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 4.1e-18 94.7 106 54.7
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 7.0e-18 94.0 109 51.4
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 2.0e-17 92.4 110 56.4
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 3.5e-17 91.7 111 58.6
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 4.5e-17 91.3 99 58.6
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 5.9e-17 90.9 109 57.8
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 7.7e-17 90.5 102 54.9
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.0e-16 90.1 98 56.1
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 1.7e-16 89.4 101 55.4
unitig_21.g20319 Utricularia gibba HOM05D006762 ORTHO05D003505 1.7e-16 89.4 108 54.6
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 2.2e-16 89.0 111 57.7
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 2.2e-16 89.0 95 63.2
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 2.2e-16 89.0 100 59.0
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 2.2e-16 89.0 98 55.1
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 2.2e-16 89.0 102 56.9
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 2.9e-16 88.6 98 55.1
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 2.9e-16 88.6 96 54.2
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 2.9e-16 88.6 94 64.9
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 6.5e-16 87.4 95 51.6
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 1.1e-15 86.7 102 52.9
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.1e-15 86.7 108 57.4
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.1e-15 86.7 108 57.4
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 1.1e-15 86.7 108 57.4
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 1.9e-15 85.9 100 57.0
Cc08_g12340 Coffea canephora HOM05D006762 ORTHO05D003505 1.9e-15 85.9 102 58.8
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.9e-15 85.9 110 53.6
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 2.5e-15 85.5 89 56.2
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 2.5e-15 85.5 94 58.5
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 2.5e-15 85.5 110 53.6
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 4.2e-15 84.7 102 52.0
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 4.2e-15 84.7 101 56.4
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 4.2e-15 84.7 94 55.3
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 7.2e-15 84.0 111 51.4
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 7.2e-15 84.0 100 56.0
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 9.4e-15 83.6 105 55.2
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 1.2e-14 83.2 102 53.9
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 1.6e-14 82.8 90 58.9
Lalb_Chr16g0386731 Lupinus albus HOM05D006762 ORTHO05D003505 2.1e-14 82.4 91 59.3
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 6.1e-14 80.9 98 56.1
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 6.1e-14 80.9 107 46.7
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 1.0e-13 80.1 98 55.1
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 1.0e-13 80.1 95 57.9
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 1.0e-13 80.1 98 55.1
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 1.4e-13 79.7 98 56.1
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 1.8e-13 79.3 100 55.0
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 3.0e-13 78.6 93 51.6
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 5.2e-13 77.8 93 50.5
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 5.2e-13 77.8 93 55.9
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 6.8e-13 77.4 94 55.3
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 6.8e-13 77.4 105 50.5
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 8.8e-13 77.0 91 52.7
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 8.8e-13 77.0 99 51.5
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 1.2e-12 76.6 93 52.7
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 2.0e-12 75.9 99 49.5
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 2.6e-12 75.5 89 57.3
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 2.6e-12 75.5 100 54.0
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 4.4e-12 74.7 93 53.8
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 5.7e-12 74.3 89 52.8
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 5.7e-12 74.3 89 57.3
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.3e-11 73.2 96 52.1
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 1.7e-11 72.8 100 50.0
Dinv39153 Davidia involucrata HOM05D000502 ORTHO05D000356 2.2e-11 72.4 89 57.3
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 2.2e-11 72.4 101 49.5
SalBow4G0096 Salvia bowleyana HOM05D006762 ORTHO05D003505 2.8e-11 72.0 89 58.4
SalBow4G2872 Salvia bowleyana HOM05D006762 ORTHO05D003505 2.8e-11 72.0 89 58.4
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 4.8e-11 71.2 92 56.5
Nn6g33933 Nelumbo nucifera HOM05D006762 ORTHO05D003505 4.8e-11 71.2 102 51.0
TWI60G1284 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 6.3e-11 70.9 100 55.0
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 8.3e-11 70.5 103 50.5
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 1.1e-10 70.1 87 54.0
THA.LOC104812806 Tarenaya hassleriana HOM05D006762 ORTHO05D003505 1.1e-10 70.1 89 50.6
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 1.4e-10 69.7 87 49.4
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 1.4e-10 69.7 101 47.5
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 1.4e-10 69.7 104 53.8
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 1.4e-10 69.7 91 53.8
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 1.4e-10 69.7 100 51.0
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 5.4e-10 67.8 101 46.5
A10p26140 Brassica napus HOM05D007429 ORTHO05D003505 9.1e-10 67.0 99 47.5
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 1.2e-09 66.6 93 43.0
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 1.2e-09 66.6 107 43.9
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 1.6e-09 66.2 98 45.9
BcaC04g19209 Brassica carinata HOM05D007429 ORTHO05D003505 2.7e-09 65.5 99 46.5
C09p65190 Brassica napus HOM05D007429 ORTHO05D003505 2.7e-09 65.5 99 46.5
BolC9t59348H Brassica oleracea HOM05D007429 ORTHO05D003505 2.7e-09 65.5 99 46.5
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 2.7e-09 65.5 101 45.5
BraA10t44673Z Brassica rapa HOM05D007429 ORTHO05D003505 3.5e-09 65.1 99 46.5
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 3.5e-09 65.1 85 49.4
BcaB08g37037 Brassica carinata HOM05D007429 ORTHO05D003505 7.7e-09 63.9 99 46.5
Sp6g31990 Schrenkiella parvula HOM05D007429 ORTHO05D003505 1.0e-08 63.5 99 46.5
AL6G22340 Arabidopsis lyrata HOM05D007429 ORTHO05D003505 3.8e-08 61.6 99 44.4
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 5.0e-08 61.2 98 41.8
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 5.0e-08 61.2 98 41.8
arahy.Tifrunner.gnm1.ann1.A5XQNM Arachis hypogaea HOM05D006762 ORTHO05D003505 6.5e-08 60.8 91 50.5
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.1e-07 60.1 90 48.9
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 1.1e-07 60.1 99 44.4
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 1.1e-07 60.1 95 42.1
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 1.5e-07 59.7 89 49.4
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 1.5e-07 59.7 90 47.8
Carub.0006s1011 Capsella rubella HOM05D007429 ORTHO05D003505 1.9e-07 59.3 99 43.4
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 1.9e-07 59.3 101 43.6
Aa31LG3G15560 Aethionema arabicum HOM05D007429 ORTHO05D003505 2.5e-07 58.9 100 44.0
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.5e-07 58.9 99 43.4
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 3.2e-07 58.5 98 48.0
BcaC03g13383 Brassica carinata HOM05D007429 ORTHO05D003505 3.2e-07 58.5 99 45.5
A02p01120 Brassica napus HOM05D007429 ORTHO05D003505 3.2e-07 58.5 99 45.5
C02p05300 Brassica napus HOM05D007429 ORTHO05D003505 3.2e-07 58.5 99 45.5
BolC2t06478H Brassica oleracea HOM05D007429 ORTHO05D003505 3.2e-07 58.5 99 45.5
BraA02t05091Z Brassica rapa HOM05D007429 ORTHO05D003505 3.2e-07 58.5 99 45.5
arahy.Tifrunner.gnm1.ann1.QP3VPD Arachis hypogaea HOM05D006762 ORTHO05D003505 4.2e-07 58.2 96 51.0
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 4.2e-07 58.2 99 43.4
AT5G11630 Arabidopsis thaliana HOM05D007429 ORTHO05D003505 5.5e-07 57.8 99 42.4
CiPaw.08G026200 Carya illinoinensis HOM05D007429 ORTHO05D003505 5.5e-07 57.8 99 45.5
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 5.5e-07 57.8 87 44.8
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 5.5e-07 57.8 98 42.9
Oeu030718.1 Olea europaea HOM05D007429 ORTHO05D003505 7.2e-07 57.4 100 41.0
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 9.4e-07 57.0 89 49.4
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 1.2e-06 56.6 43 65.1
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 1.2e-06 56.6 99 45.5
Glyma.18G109000 Glycine max HOM05D006762 ORTHO05D003505 1.2e-06 56.6 90 48.9
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 1.2e-06 56.6 98 41.8
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 1.6e-06 56.2 65 52.3
Dinv23374 Davidia involucrata HOM05D007429 ORTHO05D003505 1.6e-06 56.2 98 42.9
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 2.1e-06 55.8 105 40.0
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 2.1e-06 55.8 88 46.6
Glyma.03G118000 Glycine max HOM05D006762 ORTHO05D022366 2.1e-06 55.8 95 45.3
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 2.1e-06 55.8 89 46.1
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 2.1e-06 55.8 98 43.9
Os02g0658300 Oryza sativa ssp. japonica HOM05D006762 ORTHO05D003505 2.1e-06 55.8 100 46.0
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 2.1e-06 55.8 95 43.2
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 2.7e-06 55.5 99 44.4
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 2.7e-06 55.5 87 48.3
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 3.6e-06 55.1 88 46.6
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 3.6e-06 55.1 98 39.8
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 4.7e-06 54.7 92 41.3
CSS0002972 Camellia sinensis var. sinensis HOM05D007429 ORTHO05D003505 4.7e-06 54.7 103 42.7
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 4.7e-06 54.7 71 52.1
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 6.1e-06 54.3 93 38.7
Dinv44108 Davidia involucrata HOM05D006762 ORTHO05D003505 6.1e-06 54.3 38 73.7
Lj3g0016504 Lotus japonicus HOM05D006762 ORTHO05D022366 6.1e-06 54.3 92 44.6
Actinidia14679 Actinidia chinensis HOM05D007429 ORTHO05D003505 8.0e-06 53.9 102 43.1
arahy.Tifrunner.gnm1.ann1.8JK4ZI Arachis hypogaea HOM05D006762 ORTHO05D003505 8.0e-06 53.9 92 47.8
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 8.0e-06 53.9 99 43.4
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 8.0e-06 53.9 89 42.7
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 8.0e-06 53.9 97 41.2


User provided reference genes

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