Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu018814.3 Olea europaea HOM05D006842 ORTHO05D008908 0.0e+00 1315.8 1070 100.0
MSTRG.26539 Avicennia marina HOM05D006842 ORTHO05D008908 1.9e-209 733.8 1060 69.0
Migut.L01888 Erythranthe guttata HOM05D006842 ORTHO05D008908 7.8e-179 632.1 1059 65.8
Actinidia01285 Actinidia chinensis HOM05D006842 ORTHO05D008908 1.9e-161 574.3 1069 59.8
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 7.3e-161 572.4 1067 63.4
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 3.1e-159 567.0 1062 62.7
TAR626G0090 Trochodendron aralioides HOM05D006842 ORTHO05D008908 7.6e-158 562.4 1074 59.7
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 3.1e-151 540.4 1061 60.5
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 4.0e-151 540.0 1061 60.5
Potri.018G143800 Populus trichocarpa HOM05D006842 ORTHO05D008908 2.0e-150 537.7 1070 62.3
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 1.1e-148 531.9 1018 62.6
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 2.4e-148 530.8 1041 63.7
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 7.1e-148 529.3 1022 62.6
CANSAT11G0234 Cannabis sativa HOM05D006842 ORTHO05D008908 1.8e-143 514.6 1062 59.7
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 3.1e-143 513.8 717 58.2
vmacro20826 Vaccinium macrocarpon HOM05D006842 ORTHO05D008908 2.0e-142 511.1 1065 57.3
RcHm_v2.0_Chr4g0399881 Rosa chinensis HOM05D006842 ORTHO05D008908 5.8e-142 509.6 1062 60.8
Cc06_g21740 Coffea canephora HOM05D006842 ORTHO05D008908 1.3e-141 508.4 1064 60.0
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 7.9e-139 499.2 1057 58.9
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 1.0e-138 498.8 1073 58.9
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 8.7e-138 495.7 1057 58.8
Rhsim01G0118900 Rhododendron simsii HOM05D006842 ORTHO05D008908 3.3e-137 493.8 1064 47.5
Cpa.g.sc95.19 Carica papaya HOM05D006842 ORTHO05D008908 7.4e-137 492.7 1061 58.4
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 8.1e-136 489.2 989 60.3
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 4.0e-135 486.9 718 56.7
ClCG11G011810 Citrullus lanatus HOM05D006842 ORTHO05D008908 5.3e-135 486.5 1064 58.9
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 1.2e-134 485.3 1065 59.7
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 3.8e-133 480.3 1064 49.6
SGA_v2.0_scaffold231G43415 Striga asiatica HOM05D006842 ORTHO05D008908 8.4e-133 479.2 1064 57.4
MELO3C003981.2 Cucumis melo HOM05D006842 ORTHO05D008908 1.9e-132 478.0 1065 60.9
CsaV3_2G008680 Cucumis sativus L. HOM05D006842 ORTHO05D008908 1.6e-131 474.9 1065 57.1
Atru.chr8.567 Acer truncatum HOM05D006842 ORTHO05D008908 4.6e-131 473.4 725 56.3
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 3.9e-130 470.3 1062 58.1
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 6.7e-130 469.5 1068 52.7
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 1.1e-129 468.8 913 65.2
Sabra18G0117200 Salix brachista HOM05D006842 ORTHO05D008908 2.4e-127 461.1 988 63.1
Sopen05g008190 Solanum pennellii HOM05D006842 ORTHO05D008908 1.5e-126 458.4 1057 60.2
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 2.6e-126 457.6 1064 56.1
Nitab4.5_0007383g0050 Nicotiana tabacum HOM05D006842 ORTHO05D008908 2.5e-121 441.0 1059 59.7
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 1.3e-120 438.7 1066 54.6
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 3.1e-119 434.1 724 50.6
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 1.7e-117 428.3 1059 57.9
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 2.9e-117 427.6 724 51.1
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 2.1e-115 421.4 1065 56.6
Lj5P661T13 Lonicera japonica HOM05D006842 ORTHO05D008908 2.7e-115 421.0 1029 60.7
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 2.5e-113 414.5 1067 51.1
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 5.7e-113 413.3 1068 54.6
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 9.7e-113 412.5 718 53.2
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 2.2e-112 411.4 1067 50.9
Nn8g40885 Nelumbo nucifera HOM05D006842 ORTHO05D008908 5.3e-111 406.8 727 52.7
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 7.7e-110 402.9 1061 58.5
PGSC0003DMG400018607 Solanum tuberosum HOM05D006842 ORTHO05D008908 8.5e-109 399.4 1068 56.9
Aa31LG3G13140 Aethionema arabicum HOM05D006842 ORTHO05D008908 2.7e-107 394.4 1046 55.1
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 2.7e-107 394.4 1063 48.4
CAN.G272.1 Capsicum annuum HOM05D006842 ORTHO05D008908 3.6e-107 394.0 1053 57.7
Hma1.2p1_0314F.1_g121750 Hydrangea macrophylla HOM05D006842 ORTHO05D008908 4.6e-107 393.7 579 60.4
Peaxi162Scf00528g00082 Petunia axillaris HOM05D006842 ORTHO05D008908 7.7e-102 376.3 925 62.7
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 5.5e-100 370.2 1063 53.4
Dinv25428 Davidia involucrata HOM05D006842 ORTHO05D008908 3.6e-99 367.5 1007 40.7
CARHR271050 Cardamine hirsuta HOM05D006842 ORTHO05D008908 2.0e-97 361.7 628 55.7
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 1.8e-95 355.1 727 49.9
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 4.1e-95 354.0 1063 55.1
SalBow5G4345 Salvia bowleyana HOM05D006842 ORTHO05D008908 1.6e-94 352.1 917 60.6
AT5G57250 Arabidopsis thaliana HOM05D006842 ORTHO05D008908 3.5e-94 350.9 727 49.1
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 2.9e-93 347.8 727 49.2
Carub.0008s1775 Capsella rubella HOM05D006842 ORTHO05D008908 3.8e-93 347.4 728 50.0
Thhalv10012580m.g Eutrema salsugineum HOM05D006842 ORTHO05D008908 5.0e-93 347.1 620 55.0
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 1.5e-92 345.5 1068 51.1
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 7.2e-92 343.2 899 57.0
MBI13_g31535_MAGBIO Magnolia biondii HOM05D006842 ORTHO05D008908 1.7e-85 322.0 1102 54.2
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 6.5e-85 320.1 649 44.4
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 5.2e-82 310.5 1068 50.4
BcaC04g19984 Brassica carinata HOM05D006842 ORTHO05D008908 8.8e-82 309.7 629 51.7
C09p49110 Brassica napus HOM05D006842 ORTHO05D008908 8.8e-82 309.7 629 51.7
BolC9t57760H Brassica oleracea HOM05D006842 ORTHO05D008908 5.7e-81 307.0 626 51.3
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 4.8e-80 303.9 976 54.1
Solyc05g013400.4 Solanum lycopersicum HOM05D006842 ORTHO05D008908 2.9e-77 294.7 1057 43.6
HPP92_021041 Vanilla planifolia HOM05D006842 ORTHO05D008908 5.5e-76 290.4 723 44.3
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 6.8e-74 283.5 670 54.8
BraA10t43553Z Brassica rapa HOM05D006842 ORTHO05D008908 2.4e-71 275.0 633 51.8
TWI34G1525 Tripterygium wilfordii HOM05D006842 ORTHO05D008908 7.8e-70 270.0 671 56.5
BcaB08g36087 Brassica carinata HOM05D006842 ORTHO05D008908 8.6e-69 266.5 628 51.4
A10p14700 Brassica napus HOM05D006842 ORTHO05D008908 7.3e-68 263.5 634 51.3
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 6.2e-59 233.8 540 47.2
THA.LOC104811115 Tarenaya hassleriana HOM05D006842 ORTHO05D008908 7.5e-57 226.9 335 43.0
MD16G1250300 Malus domestica HOM05D006842 ORTHO05D008908 4.9e-48 197.6 241 47.7
Glyma.09G058602 Glycine max HOM05D006842 ORTHO05D008908 1.2e-43 183.0 210 45.2
HPP92_027423 Vanilla planifolia HOM05D006842 ORTHO05D008908 2.4e-42 178.7 334 31.7
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 1.0e-37 163.3 918 52.4
CDE02G4182 Ceratophyllum demersum HOM05D006842 ORTHO05D008908 2.8e-35 155.2 580 44.8
Manes.14G159800 Manihot esculenta HOM05D006842 ORTHO05D008908 3.4e-33 148.3 481 64.2
Os01g0263400 Oryza sativa ssp. japonica HOM05D006842 ORTHO05D008908 2.1e-27 129.0 720 37.4
RcHm_v2.0_Chr2g0131261 Rosa chinensis HOM05D006842 ORTHO05D008908 1.3e-24 119.8 147 41.5
MD16G1250400 Malus domestica HOM05D006842 ORTHO05D008908 2.9e-24 118.6 245 31.8
Sc08g0004670 Simmondsia chinensis HOM05D006842 ORTHO05D008908 1.1e-20 106.7 450 61.3
Nitab4.5_0007383g0080 Nicotiana tabacum HOM05D006842 ORTHO05D008908 2.4e-18 99.0 210 31.0
ATR0626G269 Amborella trichopoda HOM05D006842 ORTHO05D008908 4.9e-16 91.3 617 41.0
Glyma.09G058502 Glycine max HOM05D006842 ORTHO05D008908 4.9e-16 91.3 157 34.4
AUR62028364 Chenopodium quinoa HOM05D006842 ORTHO05D008908 1.2e-14 86.7 149 40.9
Hund08945 Selenicereus undatus HOM05D006842 ORTHO05D008908 1.2e-14 86.7 443 57.8
AUR62025363 Chenopodium quinoa HOM05D006842 ORTHO05D008908 1.6e-14 86.3 149 40.3
MD16G1250600 Malus domestica HOM05D006842 ORTHO05D008908 4.6e-14 84.7 151 37.1
Zm00001eb128320 Zea mays HOM05D006842 ORTHO05D008908 1.0e-13 83.6 550 49.8
Ah.14g084430 Amaranthus hybridus HOM05D006842 ORTHO05D008908 2.3e-13 82.4 156 35.3
Nn8g40884 Nelumbo nucifera HOM05D006842 ORTHO05D008908 4.8e-11 74.7 143 33.6
Medtr3g103990 Medicago truncatula HOM05D006842 ORTHO05D008908 1.4e-10 73.2 96 38.5
MSTRG.27466 Avicennia marina HOM05D007390 ORTHO05D009114 7.6e-09 67.4 109 30.3
CiPaw.01G197600 Carya illinoinensis HOM05D000001 ORTHO05D000003 1.4e-07 63.2 151 29.8
PSO339G3988 Papaver somniferum HOM05D007212 ORTHO05D009094 2.5e-07 62.4 147 29.9
Gohir.A13G095345 Gossypium hirsutum HOM05D000001 ORTHO05D009676 3.2e-07 62.0 191 25.1
Gorai.001G248700 Gossypium raimondii HOM05D000001 ORTHO05D009676 7.1e-07 60.8 191 25.1
Gohir.D13G097100 Gossypium hirsutum HOM05D000001 ORTHO05D009676 9.3e-07 60.5 191 24.6
Oeu041026.1 Olea europaea HOM05D007212 ORTHO05D009094 2.7e-06 58.9 245 22.0
Phvul.006G047700 Phaseolus vulgaris HOM05D000001 ORTHO05D010435 2.7e-06 58.9 180 21.7
Thecc.05G049800 Theobroma cacao HOM05D000001 ORTHO05D009676 2.7e-06 58.9 191 24.1


User provided reference genes

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