Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 3.3e-220 768.1 385 100.0
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 1.5e-103 380.6 290 69.0
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 6.2e-102 375.2 266 71.1
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 6.2e-102 375.2 266 71.1
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 8.0e-102 374.8 234 76.9
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 1.4e-101 374.0 290 65.5
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 4.0e-101 372.5 230 78.3
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 5.2e-101 372.1 290 66.9
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 1.2e-100 370.9 292 66.1
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 5.8e-100 368.6 229 79.0
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 2.2e-99 366.7 247 72.5
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 2.4e-98 363.2 241 73.4
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 7.0e-98 361.7 296 64.5
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.7e-97 359.8 233 75.1
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 2.7e-97 359.8 233 75.1
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 2.7e-97 359.8 228 75.4
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 3.5e-97 359.4 234 74.8
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 3.5e-97 359.4 266 69.9
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 4.6e-97 359.0 283 64.3
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 6.0e-97 358.6 273 66.3
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 7.8e-97 358.2 224 77.2
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 1.0e-96 357.8 236 73.3
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.7e-96 357.1 274 66.8
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.7e-96 357.1 274 66.8
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 2.3e-96 356.7 284 64.4
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 3.9e-96 355.9 243 70.4
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 5.0e-96 355.5 250 71.6
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 5.0e-96 355.5 274 67.2
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 6.6e-96 355.1 283 63.6
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 6.6e-96 355.1 288 65.3
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 8.6e-96 354.8 263 69.6
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 8.6e-96 354.8 290 64.1
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 8.6e-96 354.8 263 68.8
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 8.6e-96 354.8 263 68.8
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 1.9e-95 353.6 224 73.7
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 3.3e-95 352.8 295 62.0
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 9.5e-95 351.3 222 74.8
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 9.5e-95 351.3 276 64.1
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 2.8e-94 349.7 253 68.0
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 4.7e-94 349.0 274 64.6
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 1.1e-93 347.8 281 63.7
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 2.3e-93 346.7 251 68.9
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 8.9e-93 344.7 260 67.3
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 8.9e-93 344.7 285 61.1
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 2.6e-92 343.2 260 65.8
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 9.9e-92 341.3 286 62.6
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 2.2e-91 340.1 287 62.7
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 2.9e-91 339.7 226 71.7
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 3.7e-91 339.3 259 66.0
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 6.4e-91 338.6 286 62.6
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 8.3e-91 338.2 237 69.6
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 4.1e-90 335.9 254 66.5
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 5.4e-90 335.5 255 65.1
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 7.1e-90 335.1 240 66.7
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 2.1e-89 333.6 245 66.9
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 3.5e-89 332.8 255 66.7
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 3.5e-89 332.8 268 61.6
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 6.0e-89 332.0 234 68.8
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 6.0e-89 332.0 251 67.3
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 6.0e-89 332.0 338 54.4
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 6.0e-89 332.0 248 66.1
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 1.0e-88 331.3 222 71.2
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 1.7e-88 330.5 338 55.3
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 2.3e-88 330.1 228 70.6
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 3.0e-88 329.7 309 57.6
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 3.0e-88 329.7 202 77.7
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 3.9e-88 329.3 282 61.3
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 5.1e-88 328.9 323 56.3
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 6.6e-88 328.6 216 71.8
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 8.6e-88 328.2 245 66.5
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 8.6e-88 328.2 245 66.5
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 1.1e-87 327.8 271 62.0
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 1.1e-87 327.8 297 59.9
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 1.5e-87 327.4 221 71.0
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 2.5e-87 326.6 234 69.7
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 5.6e-87 325.5 244 66.4
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 7.3e-87 325.1 228 70.6
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 9.5e-87 324.7 247 67.6
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 1.4e-85 320.9 220 69.5
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 1.4e-85 320.9 271 62.0
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 2.4e-85 320.1 228 68.0
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 7.6e-84 315.1 235 66.0
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 9.9e-84 314.7 217 67.7
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 9.9e-84 314.7 236 65.7
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 1.7e-83 313.9 213 71.8
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 3.8e-83 312.8 271 60.1
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 2.7e-81 306.6 274 62.0
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 3.5e-81 306.2 293 57.7
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 6.6e-80 302.0 273 60.1
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 4.3e-79 299.3 211 69.2
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 7.6e-76 288.5 225 60.4
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 9.0e-69 265.0 219 57.1
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 1.1e-66 258.1 193 69.9
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 1.2e-65 254.6 227 58.6
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 2.7e-65 253.4 220 55.9
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 3.9e-64 249.6 210 60.5
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 1.1e-55 221.5 193 60.1
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 3.3e-55 219.9 222 49.5
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 5.6e-55 219.2 219 48.4
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 6.2e-54 215.7 167 64.7
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 6.9e-53 212.2 190 53.2
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 4.5e-52 209.5 167 64.7
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 6.5e-51 205.7 198 56.1
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 9.3e-50 201.8 195 55.9
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.8e-48 197.6 155 63.9
PSO832G0438 Papaver somniferum HOM05D006384 ORTHO05D007917 3.2e-42 176.8 114 72.8
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 3.9e-40 169.9 168 56.0
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 5.7e-39 166.0 121 63.6
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 1.7e-38 164.5 120 64.2
Ciclev10013192m.g Citrus clementina HOM05D006384 ORTHO05D007917 1.4e-34 151.4 95 76.8
CSS0008908 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 3.9e-32 143.3 83 84.3
CSS0018803 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 3.9e-32 143.3 83 84.3
Cfa026119 Carpinus fangiana HOM05D006384 ORTHO05D007917 8.5e-19 99.0 227 30.8
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 1.1e-13 82.0 129 38.0
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 4.1e-13 80.1 82 45.1
Oeu052594.2 Olea europaea HOM05D003479 ORTHO05D004659 1.2e-09 68.6 46 71.7
DCAR_017395 Daucus carota HOM05D006384 ORTHO05D007917 6.1e-09 66.2 56 55.4
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 8.0e-09 65.9 173 24.3
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 8.0e-09 65.9 220 23.2
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 1.8e-08 64.7 232 22.8
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 3.0e-08 63.9 222 20.7
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 3.0e-08 63.9 170 24.1
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 3.0e-08 63.9 219 22.4
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 5.2e-08 63.2 223 22.0
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 8.8e-08 62.4 170 22.4
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 8.8e-08 62.4 225 25.3
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 1.2e-07 62.0 170 23.5
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 1.2e-07 62.0 248 21.0
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 2.0e-07 61.2 229 22.7
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 2.0e-07 61.2 244 22.1
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 2.0e-07 61.2 227 22.0
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 2.6e-07 60.8 245 22.0
Cpa.g.sc2150.3 Carica papaya HOM05D006384 ORTHO05D007917 2.6e-07 60.8 46 67.4
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 4.4e-07 60.1 130 24.6
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 4.4e-07 60.1 227 22.5
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 5.7e-07 59.7 219 22.8
RcHm_v2.0_Chr4g0411411 Rosa chinensis HOM05D006384 ORTHO05D007917 1.7e-06 58.2 49 59.2
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 1.7e-06 58.2 218 21.6
FAN14G2601 Fragaria x ananassa HOM05D006384 ORTHO05D007917 3.7e-06 57.0 76 44.7
FAN14G5547 Fragaria x ananassa HOM05D006384 ORTHO05D007917 3.7e-06 57.0 76 44.7
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 8.3e-06 55.8 206 24.3
TAR374G1213 Trochodendron aralioides HOM05D000928 ORTHO05D000023 8.3e-06 55.8 48 50.0


User provided reference genes

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