Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 1.6e-307 1058.5 509 100.0
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 2.1e-227 792.3 528 73.7
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 5.8e-225 784.3 507 76.7
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 4.2e-223 778.1 509 75.6
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 3.0e-221 771.9 509 75.0
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 3.9e-221 771.5 507 75.3
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 5.1e-221 771.2 507 75.1
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 1.9e-220 769.2 509 74.3
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 3.3e-220 768.5 507 75.1
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 4.8e-219 764.6 508 74.6
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 6.2e-219 764.2 505 75.0
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 2.4e-218 762.3 505 74.1
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 4.5e-217 758.1 508 72.4
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 1.7e-216 756.1 509 73.1
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 2.2e-216 755.7 499 74.5
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 2.9e-216 755.4 508 73.2
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 2.4e-215 752.3 508 71.7
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 1.2e-214 750.0 523 71.1
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 1.2e-214 750.0 508 72.4
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 2.7e-214 748.8 509 71.9
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 2.7e-214 748.8 509 71.5
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 3.5e-214 748.4 509 71.3
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 1.3e-213 746.5 509 70.9
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 5.1e-213 744.6 508 72.2
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 6.7e-213 744.2 506 71.5
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 1.5e-212 743.0 508 72.2
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 2.5e-212 742.3 506 71.5
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 4.3e-212 741.5 507 71.2
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 9.6e-212 740.3 508 71.1
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 1.3e-211 740.0 509 71.1
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.3e-211 740.0 509 71.5
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 2.1e-211 739.2 509 70.9
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 3.7e-211 738.4 509 70.7
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 3.7e-211 738.4 509 70.9
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 1.1e-210 736.9 507 71.0
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 3.1e-210 735.3 508 70.7
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 5.3e-210 734.6 512 70.7
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 5.3e-210 734.6 507 71.2
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 6.9e-210 734.2 509 69.7
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 9.0e-210 733.8 506 70.4
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 9.0e-210 733.8 502 71.5
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.5e-209 733.0 505 71.1
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.5e-209 733.0 505 71.1
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 2.0e-209 732.6 505 71.1
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 4.5e-209 731.5 505 70.9
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 4.5e-209 731.5 505 70.9
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 5.8e-209 731.1 506 70.4
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 7.6e-209 730.7 508 70.7
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 1.3e-208 729.9 499 71.5
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 1.7e-208 729.6 505 70.7
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 2.2e-208 729.2 499 70.9
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 2.2e-208 729.2 511 70.8
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 2.9e-208 728.8 508 69.5
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 2.9e-208 728.8 504 70.8
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 2.9e-208 728.8 508 69.7
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 3.8e-208 728.4 499 71.3
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 3.8e-208 728.4 439 80.4
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 4.9e-208 728.0 507 70.6
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 6.5e-208 727.6 506 70.6
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 8.4e-208 727.2 504 70.6
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 8.4e-208 727.2 506 69.8
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.9e-207 726.1 504 70.8
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 3.2e-207 725.3 506 70.2
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 4.2e-207 724.9 508 69.7
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 4.2e-207 724.9 509 70.9
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 5.5e-207 724.5 595 63.7
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 7.1e-207 724.2 504 70.4
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 1.6e-206 723.0 506 70.2
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 1.6e-206 723.0 500 70.4
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 6.0e-206 721.1 503 70.2
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 7.9e-206 720.7 544 66.2
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 1.0e-205 720.3 505 71.1
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 1.3e-205 719.9 514 69.5
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 6.7e-205 717.6 516 69.0
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 3.3e-204 715.3 509 68.6
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 4.3e-204 714.9 451 76.7
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 3.7e-203 711.8 510 69.4
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 8.2e-203 710.7 509 67.8
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 1.1e-202 710.3 506 68.4
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 1.1e-202 710.3 504 68.5
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 2.4e-202 709.1 507 68.4
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 3.1e-202 708.8 509 68.2
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 5.3e-202 708.0 511 68.7
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.2e-201 706.8 507 68.6
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 3.8e-200 701.8 426 80.3
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 8.5e-200 700.7 510 67.8
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 2.7e-198 695.7 441 74.8
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 4.6e-198 694.9 437 75.5
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 3.0e-197 692.2 447 74.3
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 4.8e-195 684.9 510 66.7
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 1.5e-193 679.9 505 66.7
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 3.4e-193 678.7 506 66.8
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 2.2e-192 676.0 508 65.7
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 7.0e-186 654.4 509 64.8
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 4.5e-185 651.7 505 64.8
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 1.2e-182 643.7 511 62.4
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.6e-182 643.3 498 64.5
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.5e-180 636.7 505 62.0
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 2.6e-180 636.0 512 60.5
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 4.1e-178 628.6 497 63.2
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 1.0e-176 624.0 498 61.2
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 2.2e-176 622.9 509 64.4
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 3.8e-176 622.1 508 59.3
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 1.9e-175 619.8 374 79.7
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 3.3e-172 609.0 508 57.9
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.8e-170 603.2 507 57.8
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 2.7e-169 599.4 401 74.1
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 1.9e-167 593.2 498 59.4
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 7.2e-167 591.3 412 71.1
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 3.4e-164 582.4 421 68.2
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 4.4e-164 582.0 504 56.3
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 2.7e-161 572.8 410 70.0
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 5.7e-156 555.1 511 59.5
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 1.4e-154 550.4 426 65.5
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 2.4e-154 549.7 507 54.0
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 3.5e-153 545.8 512 52.9
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 7.8e-153 544.7 510 53.5
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.0e-152 544.3 512 52.9
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 7.5e-148 528.1 497 52.3
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 4.3e-143 512.3 327 74.0
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.7e-139 500.4 388 62.6
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.9e-138 496.9 371 64.4
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 6.2e-134 481.9 502 49.4
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 1.4e-125 454.1 452 55.1
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 3.9e-120 436.0 514 44.4
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 2.9e-115 419.9 224 87.9
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 6.2e-102 375.6 277 66.8
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 1.5e-100 370.9 423 49.2
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 6.5e-83 312.4 260 60.8
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 8.2e-78 295.4 189 70.9
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.8e-70 269.6 192 70.3
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.7e-67 261.2 210 62.4
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 2.6e-63 247.3 182 70.3
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 9.7e-63 245.4 231 57.6
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 9.4e-58 228.8 230 55.2
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 7.5e-55 219.2 169 67.5
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.2e-50 203.8 113 83.2
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 3.3e-42 177.2 141 59.6
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.2e-37 160.6 87 86.2
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 5.4e-37 159.8 174 51.7
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.5e-34 151.8 93 76.3
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 3.6e-33 147.1 172 47.7
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 9.8e-31 139.0 202 39.1
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.7e-30 138.3 82 79.3
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 3.0e-27 127.5 78 76.9
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 4.9e-22 110.2 82 62.2
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 1.4e-21 108.6 63 81.0
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 3.5e-20 104.0 297 30.6
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 1.3e-19 102.1 71 63.4
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 3.0e-19 100.9 55 76.4
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 1.7e-14 85.1 119 43.7
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 2.9e-14 84.3 98 46.9
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 9.2e-13 79.3 37 86.5
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 8.6e-11 72.8 36 88.9
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 4.3e-10 70.5 141 38.3
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 4.9e-06 57.0 33 75.8


User provided reference genes

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