Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 1.8e-173 612.5 301 100.0
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 2.0e-71 273.5 327 48.6
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 5.4e-69 265.4 315 48.9
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 1.6e-68 263.8 320 50.0
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 5.0e-67 258.8 313 49.2
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 1.8e-64 250.4 308 49.0
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 2.9e-62 243.0 317 46.7
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 2.9e-62 243.0 317 46.7
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 1.4e-61 240.7 299 47.2
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 9.5e-58 228.0 321 44.5
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.6e-57 226.1 321 45.5
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 2.3e-56 223.4 332 42.8
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 6.8e-56 221.9 313 44.7
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.3e-54 217.6 309 43.7
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 7.0e-53 211.8 309 42.4
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 7.0e-53 211.8 302 45.0
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 1.3e-51 207.6 315 40.3
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 5.1e-51 205.7 318 39.9
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 6.2e-49 198.7 316 39.6
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 3.4e-47 193.0 312 40.1
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.3e-46 191.0 316 41.5
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 4.9e-46 189.1 315 41.3
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 6.4e-46 188.7 233 46.8
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 1.4e-45 187.6 314 39.8
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 5.4e-45 185.7 320 36.9
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 7.1e-45 185.3 320 36.6
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 3.5e-44 183.0 319 39.2
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 4.6e-44 182.6 319 37.3
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 1.0e-43 181.4 319 37.9
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 1.7e-43 180.6 303 39.9
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.5e-42 177.6 331 39.6
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.5e-42 177.6 327 37.0
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 2.5e-42 176.8 331 37.2
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 1.2e-41 174.5 323 38.7
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 3.6e-41 172.9 307 35.5
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 4.7e-41 172.6 302 41.1
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.1e-40 171.4 301 41.2
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 6.8e-40 168.7 329 37.7
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.5e-39 167.5 317 36.3
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.0e-39 167.2 319 37.9
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 2.6e-39 166.8 314 34.7
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 5.8e-39 165.6 318 37.7
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 7.6e-39 165.2 313 36.4
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.3e-38 164.5 305 41.3
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 1.3e-38 164.5 327 36.1
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 1.7e-38 164.1 318 37.4
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 4.9e-38 162.5 312 36.9
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 6.4e-38 162.2 305 40.7
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 8.4e-38 161.8 316 34.8
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 1.1e-37 161.4 301 39.2
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.4e-37 161.0 319 35.4
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.4e-37 160.2 311 36.0
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 5.4e-37 159.1 350 34.9
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 2.7e-36 156.8 325 36.0
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 3.5e-36 156.4 319 34.2
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 1.9e-34 150.6 303 35.3
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 3.3e-34 149.8 327 34.6
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.1e-33 147.1 274 35.4
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 4.7e-33 146.0 326 34.7
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 1.8e-32 144.1 337 32.3
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 3.1e-32 143.3 319 35.4
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 2.0e-31 140.6 317 33.4
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 5.8e-31 139.0 330 35.2
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 9.9e-31 138.3 326 32.8
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 9.9e-31 138.3 304 32.6
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 9.9e-31 138.3 323 32.8
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.7e-30 137.5 330 33.9
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 1.7e-30 137.5 319 33.2
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 1.7e-30 137.5 326 33.7
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 8.4e-30 135.2 310 34.5
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 1.1e-29 134.8 328 33.2
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.9e-29 134.0 326 33.4
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 1.9e-29 134.0 320 34.4
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 3.5e-28 129.8 319 32.0
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 3.5e-28 129.8 332 31.9
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 4.6e-28 129.4 316 31.6
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 2.3e-27 127.1 312 31.7
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.0e-27 126.7 311 31.2
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 3.9e-27 126.3 311 31.5
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 3.9e-27 126.3 330 33.9
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 5.1e-27 125.9 329 30.7
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 1.1e-26 124.8 299 32.4
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 1.1e-26 124.8 276 34.1
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 4.3e-26 122.9 332 31.6
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 7.3e-26 122.1 302 31.1
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 9.6e-26 121.7 327 32.1
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 2.8e-25 120.2 302 30.8
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 6.2e-25 119.0 331 30.2
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 8.1e-25 118.6 330 30.9
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 1.1e-24 118.2 329 30.4
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 1.4e-24 117.9 293 34.5
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 3.1e-24 116.7 193 41.5
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 5.3e-24 115.9 319 30.1
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 3.4e-23 113.2 263 33.1
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 7.6e-23 112.1 333 31.2
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.7e-22 110.9 330 28.5
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 4.9e-22 109.4 322 29.8
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 4.9e-22 109.4 322 29.8
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 4.9e-22 109.4 315 30.5
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 4.2e-21 106.3 320 29.4
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 4.2e-21 106.3 320 29.4
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 7.1e-21 105.5 320 29.1
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 9.3e-21 105.1 336 28.3
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 1.2e-20 104.8 272 32.4
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 2.7e-20 103.6 325 29.5
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 2.7e-20 103.6 341 30.2
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 4.6e-20 102.8 323 27.6
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.0e-19 101.7 326 28.8
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 3.0e-19 100.1 328 27.7
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 6.7e-19 99.0 323 29.1
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 8.7e-19 98.6 329 28.6
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.5e-18 97.8 325 30.8
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 1.5e-18 97.8 327 27.2
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 1.5e-18 97.8 329 27.4
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 3.3e-18 96.7 321 29.3
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 5.6e-18 95.9 322 26.7
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 2.1e-17 94.0 291 28.5
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 1.1e-16 91.7 165 37.6
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.8e-16 90.9 305 29.8
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 3.1e-16 90.1 305 25.9
unitig_26.g10255 Utricularia gibba HOM05D004679 ORTHO05D005524 9.0e-16 88.6 205 35.1
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 1.5e-15 87.8 291 28.2
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 4.5e-15 86.3 323 26.0
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 5.8e-15 85.9 180 31.1
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 7.6e-15 85.5 174 31.0
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.7e-14 84.3 163 36.2
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 3.8e-14 83.2 296 30.4
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 4.9e-14 82.8 304 28.3
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 8.4e-14 82.0 306 28.1
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.1e-13 81.6 305 27.9
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 3.2e-13 80.1 320 27.8
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.2e-12 78.2 318 26.4
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 2.1e-12 77.4 182 29.7
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 4.6e-12 76.3 257 27.2
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 6.0e-12 75.9 307 26.7
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 6.0e-12 75.9 305 27.2
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 7.9e-12 75.5 310 27.7
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 2.3e-11 73.9 291 25.4
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 5.1e-11 72.8 250 27.6
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 1.1e-10 71.6 187 29.9
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 2.5e-10 70.5 301 26.9
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 3.3e-10 70.1 309 26.5
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 2.1e-09 67.4 71 45.1
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 1.4e-08 64.7 322 25.2
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 1.4e-08 64.7 322 25.2
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 1.4e-08 64.7 322 25.2
ECA234G4300 Erigeron canadensis HOM05D004679 ORTHO05D005524 4.0e-08 63.2 158 32.3
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 5.3e-08 62.8 238 29.0
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 6.9e-08 62.4 223 27.8


User provided reference genes

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