Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 2.4e-51 205.3 109 100.0
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 3.6e-31 138.3 108 66.7
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 1.2e-18 96.7 109 55.0
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.6e-18 96.3 113 46.9
SalBow3G4069 Salvia bowleyana HOM05D005728 ORTHO05D005733 8.6e-17 90.5 109 54.1
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.1e-16 90.1 113 47.8
Oeu030182.1 Olea europaea HOM05D005728 ORTHO05D005733 2.5e-16 89.0 108 50.0
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 2.5e-16 89.0 110 50.9
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 6.1e-15 84.3 114 48.2
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 1.0e-14 83.6 111 45.0
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 3.0e-14 82.0 109 44.0
Oeu001270.1 Olea europaea HOM05D005728 ORTHO05D005733 3.0e-14 82.0 106 49.1
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 5.2e-14 81.3 110 49.1
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 8.9e-14 80.5 112 46.4
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 1.2e-13 80.1 110 41.8
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.5e-13 79.7 110 48.2
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 2.0e-13 79.3 112 44.6
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 2.6e-13 79.0 109 43.1
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 2.6e-13 79.0 113 44.2
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 3.4e-13 78.6 113 42.5
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 7.5e-13 77.4 111 42.3
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 9.8e-13 77.0 110 41.8
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.3e-12 76.6 105 46.7
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 1.7e-12 76.3 108 40.7
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 1.7e-12 76.3 108 43.5
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 1.7e-12 76.3 104 46.2
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 2.9e-12 75.5 111 40.5
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 6.4e-12 74.3 109 41.3
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 6.4e-12 74.3 109 41.3
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 6.4e-12 74.3 109 42.2
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 8.3e-12 73.9 110 40.9
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 8.3e-12 73.9 109 41.3
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 8.3e-12 73.9 109 41.3
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 8.3e-12 73.9 109 41.3
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 1.1e-11 73.6 112 42.0
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 1.4e-11 73.2 111 42.3
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 1.4e-11 73.2 110 40.0
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 2.4e-11 72.4 108 37.0
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 4.1e-11 71.6 113 40.7
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 4.1e-11 71.6 113 40.7
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 5.4e-11 71.2 110 43.6
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 7.0e-11 70.9 111 41.4
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 7.0e-11 70.9 111 38.7
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 7.0e-11 70.9 110 40.9
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 1.2e-10 70.1 111 41.4
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.2e-10 70.1 110 40.9
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 1.2e-10 70.1 109 42.2
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.2e-10 70.1 118 43.2
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.2e-10 70.1 119 43.7
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 1.6e-10 69.7 109 41.3
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 2.0e-10 69.3 111 38.7
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 2.0e-10 69.3 110 40.0
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 3.5e-10 68.6 106 38.7
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 3.5e-10 68.6 103 39.8
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 3.5e-10 68.6 112 40.2
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 4.6e-10 68.2 113 39.8
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 6.0e-10 67.8 110 40.0
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 1.0e-09 67.0 109 41.3
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.0e-09 67.0 121 43.0
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 1.0e-09 67.0 110 43.6
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 1.3e-09 66.6 110 43.6
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 1.3e-09 66.6 107 34.6
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 2.3e-09 65.9 114 42.1
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 2.3e-09 65.9 117 41.0
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 2.3e-09 65.9 113 38.9
Peaxi162Scf00101g00083 Petunia axillaris HOM05D005728 ORTHO05D005733 3.0e-09 65.5 110 38.2
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 3.9e-09 65.1 121 39.7
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 8.6e-09 63.9 110 39.1
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 1.5e-08 63.2 121 39.7
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 1.5e-08 63.2 121 39.7
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 1.5e-08 63.2 113 40.7
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 1.5e-08 63.2 110 38.2
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 1.9e-08 62.8 117 40.2
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 1.9e-08 62.8 110 34.5
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 2.5e-08 62.4 107 34.6
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 3.3e-08 62.0 111 40.5
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 4.3e-08 61.6 103 35.0
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 9.5e-08 60.5 107 41.1
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 1.2e-07 60.1 131 36.6
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 2.1e-07 59.3 116 36.2
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 2.8e-07 58.9 106 37.7
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 2.8e-07 58.9 107 34.6
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 4.7e-07 58.2 97 41.2
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 1.1e-06 57.0 112 39.3
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 1.4e-06 56.6 120 33.3
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 1.4e-06 56.6 131 35.1
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 2.3e-06 55.8 118 37.3
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 2.3e-06 55.8 106 35.8
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 3.1e-06 55.5 104 42.3


User provided reference genes

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