Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 8.3e-166 587.0 310 100.0
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 2.5e-101 372.9 310 68.4
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 1.3e-99 367.1 310 66.8
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 3.7e-97 359.0 315 64.8
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 1.4e-96 357.1 317 63.7
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 1.5e-95 353.6 317 63.4
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 7.7e-95 351.3 315 64.4
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 5.0e-94 348.6 300 66.0
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 1.2e-92 344.0 303 64.0
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 5.1e-91 338.6 315 60.3
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 9.7e-90 334.3 315 59.4
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 4.8e-89 332.0 307 59.3
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 4.5e-87 325.5 303 59.4
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 2.9e-86 322.8 306 58.8
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 3.8e-86 322.4 352 55.1
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 5.5e-85 318.5 306 58.8
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 9.4e-85 317.8 339 56.9
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 2.7e-84 316.2 312 59.6
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 6.1e-84 315.1 316 57.6
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 1.1e-80 304.3 299 59.2
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 2.4e-80 303.1 340 53.2
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 1.9e-77 293.5 310 53.2
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 1.0e-75 287.7 317 53.6
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 1.4e-75 287.3 343 52.8
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 3.0e-75 286.2 315 54.9
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 7.5e-74 281.6 312 51.9
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 7.5e-74 281.6 316 52.5
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 6.3e-73 278.5 237 65.8
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 1.8e-72 276.9 310 51.6
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 1.8e-72 276.9 316 51.9
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 5.3e-72 275.4 311 52.1
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 5.3e-72 275.4 307 53.7
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 5.3e-72 275.4 235 65.5
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 7.0e-72 275.0 335 50.7
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 1.2e-71 274.2 342 51.2
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 2.0e-71 273.5 370 46.5
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 7.7e-71 271.6 292 55.1
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 2.2e-70 270.0 231 64.1
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 6.5e-70 268.5 312 51.0
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 6.5e-70 268.5 284 56.7
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 6.5e-70 268.5 305 51.1
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 6.5e-70 268.5 292 55.1
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 2.5e-69 266.5 308 50.6
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 9.4e-69 264.6 301 54.5
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 1.2e-68 264.2 244 61.9
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 6.1e-68 261.9 318 49.7
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 5.2e-67 258.8 314 51.0
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 5.2e-67 258.8 303 53.1
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 6.8e-67 258.5 323 50.5
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 8.8e-67 258.1 297 55.2
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 1.2e-66 257.7 303 51.5
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 1.5e-66 257.3 299 54.2
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 5.7e-66 255.4 317 50.8
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 7.5e-66 255.0 313 49.8
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 1.3e-65 254.2 296 49.0
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 1.7e-65 253.8 317 50.2
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 2.2e-65 253.4 299 51.5
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 2.8e-65 253.1 310 49.7
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 2.8e-65 253.1 308 50.6
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 4.8e-65 252.3 292 51.4
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 6.3e-65 251.9 302 51.7
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 6.3e-65 251.9 318 49.4
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 1.8e-64 250.4 299 50.8
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 1.8e-64 250.4 307 50.5
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.4e-64 250.0 293 51.5
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 3.1e-64 249.6 279 52.7
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 3.1e-64 249.6 311 50.2
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 4.1e-64 249.2 338 47.3
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 9.1e-64 248.1 288 52.1
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.6e-63 247.3 302 47.7
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 5.9e-63 245.4 304 49.0
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 5.9e-63 245.4 296 47.6
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 1.3e-62 244.2 319 46.7
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 5.0e-62 242.3 313 48.9
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 8.6e-62 241.5 266 54.1
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 1.1e-61 241.1 301 49.2
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 4.2e-61 239.2 310 48.1
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 1.6e-60 237.3 310 48.7
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 1.4e-59 234.2 235 52.8
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 1.8e-59 233.8 305 49.5
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 4.0e-59 232.6 256 53.1
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 6.8e-59 231.9 298 49.7
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 8.9e-59 231.5 297 48.5
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 4.4e-58 229.2 222 56.8
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 5.7e-58 228.8 311 47.3
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.3e-57 227.6 296 49.0
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 3.7e-57 226.1 312 43.6
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 3.7e-57 226.1 315 46.0
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 4.9e-57 225.7 308 45.5
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 1.8e-56 223.8 313 45.4
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 2.4e-56 223.4 332 46.1
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 3.1e-56 223.0 320 44.4
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 7.0e-56 221.9 305 43.9
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 1.2e-55 221.1 310 41.3
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 1.6e-55 220.7 310 41.3
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 2.0e-55 220.3 309 42.1
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 2.0e-55 220.3 370 43.0
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 2.7e-55 219.9 276 48.9
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 4.5e-55 219.2 309 41.4
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 4.5e-55 219.2 309 41.1
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 1.0e-54 218.0 310 42.9
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 2.3e-54 216.9 310 41.6
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 2.9e-54 216.5 305 42.6
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 2.9e-54 216.5 271 47.2
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.9e-54 216.5 241 47.7
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 2.9e-54 216.5 317 47.0
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 3.8e-54 216.1 308 41.6
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 3.8e-54 216.1 319 42.3
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.5e-53 213.4 315 43.8
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 7.3e-53 211.8 256 48.4
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 7.3e-53 211.8 264 45.8
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 1.2e-52 211.1 310 42.6
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 2.1e-52 210.3 321 39.9
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 6.1e-52 208.8 321 39.3
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 1.8e-51 207.2 290 46.6
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 2.0e-50 203.8 258 48.1
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 1.7e-49 200.7 345 40.6
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 1.1e-48 198.0 253 48.2
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 1.1e-48 198.0 289 42.6
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 9.2e-48 194.9 310 39.0
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 1.3e-46 191.0 190 56.8
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.3e-46 190.3 266 47.7
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 5.0e-46 189.1 294 42.5
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 6.8e-43 178.7 248 43.1
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 5.8e-42 175.6 195 52.3
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 1.1e-40 171.4 269 41.3
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 1.2e-39 167.9 310 38.4
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 4.3e-37 159.5 262 41.2
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 6.2e-36 155.6 221 45.7
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 5.8e-34 149.1 137 54.0
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 1.3e-33 147.9 270 37.4
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 2.2e-33 147.1 318 34.0
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 2.1e-28 130.6 182 40.7
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 2.8e-28 130.2 246 33.7
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 7.6e-26 122.1 152 42.1
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 3.2e-24 116.7 261 31.4
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 2.7e-23 113.6 152 47.4
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 6.0e-23 112.5 192 37.0
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 6.6e-22 109.0 230 37.4
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 1.1e-19 101.7 135 42.2
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 5.2e-19 99.4 176 34.7
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 1.4e-16 91.3 204 30.9
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 5.4e-16 89.4 74 62.2
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 7.8e-15 85.5 254 28.3
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 3.0e-14 83.6 256 28.9
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 7.3e-13 79.0 182 30.2
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 1.8e-11 74.3 169 27.8
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 3.1e-11 73.6 169 29.6
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 2.0e-10 70.9 119 31.1
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 1.3e-09 68.2 68 54.4
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 2.9e-09 67.0 79 54.4
PRCOL_00005442 Prasinoderma coloniale HOM05D004617 ORTHO05D005531 4.2e-08 63.2 91 35.2


User provided reference genes

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