Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 1.6e-55 219.2 111 100.0
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 6.0e-42 174.1 112 78.6
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 1.3e-41 172.9 112 77.7
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 3.9e-41 171.4 113 75.2
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 5.1e-41 171.0 113 74.3
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 6.6e-41 170.6 111 74.8
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 4.3e-40 167.9 113 73.5
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 2.8e-39 165.2 111 71.2
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 6.2e-39 164.1 111 73.0
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 1.8e-38 162.5 113 73.5
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 9.0e-38 160.2 113 74.3
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 7.6e-37 157.1 111 70.3
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 1.3e-36 156.4 115 71.3
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.7e-36 156.0 141 60.3
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 3.8e-36 154.8 113 71.7
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 1.9e-35 152.5 111 71.2
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 5.4e-35 151.0 111 67.6
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 3.5e-34 148.3 114 65.8
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 4.6e-34 147.9 109 67.9
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 4.6e-34 147.9 112 68.8
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.0e-33 146.7 114 64.9
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 1.0e-33 146.7 114 65.8
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 1.3e-33 146.4 111 66.7
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 2.3e-33 145.6 114 64.9
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.0e-33 145.2 111 65.8
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.0e-33 145.2 111 65.8
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 3.9e-33 144.8 110 66.4
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 5.1e-33 144.4 111 67.6
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 6.7e-33 144.1 111 64.9
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.1e-32 143.3 111 64.9
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.9e-32 142.5 111 64.0
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 1.9e-32 142.5 113 65.5
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.9e-32 142.5 111 64.9
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 5.6e-32 141.0 111 64.9
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 7.4e-32 140.6 110 64.5
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 1.6e-31 139.4 111 60.4
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 4.8e-31 137.9 112 62.5
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 8.1e-31 137.1 91 71.4
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 8.1e-31 137.1 111 63.1
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.1e-30 136.7 113 61.1
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 1.4e-30 136.3 111 64.0
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 1.4e-30 136.3 110 62.7
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 1.8e-30 136.0 111 63.1
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 2.4e-30 135.6 107 65.4
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 2.4e-30 135.6 116 62.1
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 3.1e-30 135.2 114 60.5
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 4.0e-30 134.8 119 59.7
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 4.0e-30 134.8 114 60.5
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 5.3e-30 134.4 107 64.5
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 5.3e-30 134.4 111 60.4
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 5.3e-30 134.4 103 63.1
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 6.9e-30 134.0 111 62.2
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 6.9e-30 134.0 101 65.3
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 9.0e-30 133.7 104 63.5
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 9.0e-30 133.7 104 63.5
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 9.0e-30 133.7 104 63.5
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 2.0e-29 132.5 112 62.5
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 2.0e-29 132.5 111 63.1
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 2.6e-29 132.1 111 59.5
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 3.4e-29 131.7 111 61.3
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 3.4e-29 131.7 88 68.2
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 5.8e-29 131.0 109 64.2
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 5.8e-29 131.0 90 67.8
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 5.8e-29 131.0 100 67.0
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 5.8e-29 131.0 83 73.5
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 7.6e-29 130.6 112 58.9
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 7.6e-29 130.6 100 67.0
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 9.9e-29 130.2 116 59.5
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 1.3e-28 129.8 95 66.3
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 1.7e-28 129.4 85 71.8
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 1.7e-28 129.4 85 71.8
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.7e-28 129.4 111 63.1
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 2.9e-28 128.6 111 57.7
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 2.9e-28 128.6 113 59.3
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 3.8e-28 128.3 109 61.5
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 3.8e-28 128.3 111 59.5
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 4.9e-28 127.9 83 72.3
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 6.4e-28 127.5 116 59.5
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 1.4e-27 126.3 100 65.0
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 1.9e-27 125.9 109 58.7
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 2.4e-27 125.6 120 59.2
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 2.4e-27 125.6 96 67.7
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 2.4e-27 125.6 115 58.3
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 2.4e-27 125.6 155 47.7
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 2.4e-27 125.6 91 67.0
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 4.2e-27 124.8 112 56.2
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 5.5e-27 124.4 112 58.0
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 5.5e-27 124.4 112 57.1
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 5.5e-27 124.4 112 57.1
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 7.1e-27 124.0 112 57.1
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 7.1e-27 124.0 112 57.1
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 9.3e-27 123.6 112 57.1
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 9.3e-27 123.6 113 57.5
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 1.2e-26 123.2 89 65.2
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 2.1e-26 122.5 112 56.2
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 2.1e-26 122.5 112 56.2
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.1e-26 122.5 95 61.1
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 2.1e-26 122.5 110 57.3
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 2.7e-26 122.1 106 61.3
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 2.7e-26 122.1 112 56.2
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 2.7e-26 122.1 95 61.1
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 3.5e-26 121.7 84 69.0
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 4.6e-26 121.3 95 65.3
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 6.0e-26 120.9 113 54.9
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 6.0e-26 120.9 112 53.6
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.3e-25 119.8 112 53.6
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 1.3e-25 119.8 118 51.7
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 1.8e-25 119.4 113 55.8
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 2.3e-25 119.0 112 53.6
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 3.0e-25 118.6 113 54.0
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 3.9e-25 118.2 109 54.1
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 6.7e-25 117.5 145 46.9
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 1.9e-24 115.9 112 55.4
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 1.9e-24 115.9 81 67.9
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 1.6e-23 112.8 112 50.9
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 2.1e-23 112.5 156 44.2
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 2.8e-23 112.1 210 36.7
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 2.8e-23 112.1 101 56.4
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 6.2e-23 110.9 85 63.5
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 1.4e-22 109.8 112 50.0
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 3.1e-22 108.6 85 61.2
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 3.1e-22 108.6 105 58.1
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.0e-22 108.2 114 54.4
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 4.0e-22 108.2 112 54.5
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 2.0e-21 105.9 106 51.9
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 3.4e-21 105.1 119 47.9
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.0e-20 103.6 102 50.0
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.0e-20 103.6 112 47.3
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.9e-20 101.3 108 54.6
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 1.1e-19 100.1 83 59.0
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 1.4e-19 99.8 83 57.8
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 1.9e-19 99.4 112 46.4
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 3.2e-19 98.6 85 58.8
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 4.2e-19 98.2 89 53.9
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 5.5e-19 97.8 89 53.9
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 7.1e-19 97.4 68 66.2
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 7.1e-19 97.4 93 53.8
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 1.3e-17 93.2 85 56.5
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 1.3e-15 86.7 81 59.3
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 2.8e-15 85.5 99 47.5
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 6.3e-15 84.3 84 57.1
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 8.2e-15 84.0 74 56.8
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 1.4e-14 83.2 77 53.2
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 1.4e-14 83.2 77 53.2
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 3.1e-14 82.0 73 57.5
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 3.1e-14 82.0 67 58.2
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 2.0e-13 79.3 91 47.3
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 1.0e-12 77.0 85 45.9
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 2.9e-12 75.5 77 50.6
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 2.5e-11 72.4 52 63.5
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 7.2e-11 70.9 68 45.6
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 3.6e-10 68.6 61 55.7
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 1.0e-09 67.0 49 67.3
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 6.7e-09 64.3 78 46.2
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 1.5e-08 63.2 55 54.5
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 1.9e-08 62.8 55 50.9
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 1.9e-08 62.8 55 50.9
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 5.7e-08 61.2 43 69.8
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 5.7e-08 61.2 60 48.3
FAN28G0201 Fragaria x ananassa HOM05D004470 ORTHO05D005079 9.7e-08 60.5 58 55.2
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 4.8e-07 58.2 68 36.8
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 4.1e-06 55.1 72 41.7


User provided reference genes

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