Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 1.6e-64 249.2 124 100.0
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 2.1e-43 179.1 108 79.6
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 4.8e-40 167.9 108 73.1
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 8.2e-40 167.2 110 73.6
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 7.7e-38 160.6 114 71.1
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 1.3e-37 159.8 115 71.3
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 1.7e-37 159.5 111 68.5
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 2.9e-37 158.7 115 70.4
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 1.4e-36 156.4 110 70.0
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 1.9e-36 156.0 110 70.0
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 9.4e-36 153.7 108 65.7
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 9.4e-36 153.7 119 66.4
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 1.6e-35 152.9 108 70.4
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 2.7e-35 152.1 111 69.4
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 2.7e-35 152.1 113 66.4
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 3.6e-35 151.8 112 68.8
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 4.7e-35 151.4 109 68.8
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 7.9e-35 150.6 101 76.2
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 1.0e-34 150.2 103 70.9
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 1.4e-34 149.8 100 73.0
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 1.8e-34 149.4 100 76.0
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 1.8e-34 149.4 111 67.6
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 2.3e-34 149.1 102 69.6
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 2.3e-34 149.1 100 72.0
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.0e-34 148.7 100 70.0
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 3.0e-34 148.7 111 68.5
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 6.7e-34 147.5 100 71.0
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 6.7e-34 147.5 98 73.5
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 1.1e-33 146.7 111 65.8
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 1.1e-33 146.7 113 63.7
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 1.1e-33 146.7 111 65.8
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 1.1e-33 146.7 99 68.7
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 1.5e-33 146.4 100 70.0
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 1.5e-33 146.4 108 70.4
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 1.5e-33 146.4 108 66.7
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 2.6e-33 145.6 102 68.6
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 3.3e-33 145.2 106 66.0
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 3.3e-33 145.2 106 66.0
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 3.3e-33 145.2 111 64.9
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 4.4e-33 144.8 102 68.6
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 5.7e-33 144.4 103 65.0
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 7.4e-33 144.1 100 69.0
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 7.4e-33 144.1 100 69.0
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 7.4e-33 144.1 100 69.0
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 9.7e-33 143.7 99 68.7
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 9.7e-33 143.7 115 61.7
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 9.7e-33 143.7 111 64.0
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 1.3e-32 143.3 98 71.4
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 1.3e-32 143.3 105 65.7
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.7e-32 142.9 100 68.0
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 2.2e-32 142.5 104 66.3
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 2.2e-32 142.5 115 61.7
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 2.8e-32 142.1 110 63.6
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 3.7e-32 141.7 100 70.0
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 6.3e-32 141.0 99 67.7
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 8.2e-32 140.6 99 66.7
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 1.1e-31 140.2 99 66.7
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 1.8e-31 139.4 105 65.7
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 4.1e-31 138.3 115 59.1
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 4.1e-31 138.3 113 61.1
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 7.0e-31 137.5 103 65.0
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 1.6e-30 136.3 99 67.7
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 2.6e-30 135.6 101 64.4
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 3.5e-30 135.2 101 66.3
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 3.5e-30 135.2 101 66.3
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 4.5e-30 134.8 102 62.7
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 4.5e-30 134.8 102 62.7
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 4.5e-30 134.8 100 63.0
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 4.5e-30 134.8 99 64.6
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 5.9e-30 134.4 97 67.0
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 1.0e-29 133.7 102 61.8
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 1.3e-29 133.3 102 61.8
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 1.3e-29 133.3 102 61.8
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 1.3e-29 133.3 114 59.6
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 1.7e-29 132.9 102 63.7
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 1.7e-29 132.9 92 69.6
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 1.7e-29 132.9 113 57.5
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 2.2e-29 132.5 104 59.6
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 2.2e-29 132.5 99 64.6
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 2.9e-29 132.1 98 64.3
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 3.8e-29 131.7 102 60.8
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 3.8e-29 131.7 102 60.8
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 8.5e-29 130.6 103 62.1
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 1.5e-28 129.8 102 61.8
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 1.5e-28 129.8 106 61.3
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 1.9e-28 129.4 91 67.0
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 1.9e-28 129.4 147 49.7
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 1.9e-28 129.4 90 67.8
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 2.5e-28 129.0 111 57.7
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 3.2e-28 128.6 99 65.7
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 3.2e-28 128.6 111 59.5
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 3.2e-28 128.6 103 62.1
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 5.5e-28 127.9 106 63.2
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 7.2e-28 127.5 111 62.2
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 7.2e-28 127.5 121 56.2
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 1.6e-27 126.3 117 57.3
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 2.7e-27 125.6 125 49.6
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 1.0e-26 123.6 117 53.8
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 4.0e-26 121.7 123 49.6
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 5.2e-26 121.3 99 65.7
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 4.4e-25 118.2 107 57.0
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 7.5e-25 117.5 91 60.4
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 2.2e-24 115.9 99 57.6
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 4.8e-24 114.8 101 57.4
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 8.2e-24 114.0 100 62.0
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 9.1e-23 110.5 104 52.9
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 7.7e-22 107.5 88 62.5
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 7.7e-22 107.5 99 54.5
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 4.2e-20 101.7 100 53.0
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 2.1e-19 99.4 100 56.0
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 8.8e-18 94.0 57 78.9
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 2.0e-17 92.8 111 47.7
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 2.8e-16 89.0 62 64.5
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 1.1e-15 87.0 56 73.2
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 7.0e-15 84.3 63 55.6
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 3.8e-13 78.6 58 67.2
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 8.8e-10 67.4 56 58.9
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 1.3e-08 63.5 47 61.7
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 1.7e-08 63.2 106 34.9
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 1.7e-08 63.2 42 61.9
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.8e-08 62.4 51 56.9
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.8e-08 62.4 51 56.9
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 3.7e-08 62.0 54 51.9
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 8.3e-08 60.8 51 52.9
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 8.3e-08 60.8 51 52.9
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.4e-07 60.1 45 60.0
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.4e-07 60.1 45 60.0
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 1.4e-07 60.1 37 81.1
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 3.1e-07 58.9 53 45.3
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.2e-06 57.0 48 58.3


User provided reference genes

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