Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn8g38925 Nelumbo nucifera HOM05D000110 ORTHO05D000024 8.8e-85 317.0 170 100.0
Nn6g35412 Nelumbo nucifera HOM05D000110 ORTHO05D000024 2.2e-64 249.2 163 81.6
Dinv30395 Davidia involucrata HOM05D000110 ORTHO05D000024 8.0e-54 214.2 168 69.0
TAR626G1707 Trochodendron aralioides HOM05D000110 ORTHO05D000024 1.8e-53 213.0 166 72.9
TAR383G0131 Trochodendron aralioides HOM05D000110 ORTHO05D000024 8.6e-48 194.1 168 66.7
Dinv37930 Davidia involucrata HOM05D000110 ORTHO05D000024 1.9e-47 193.0 168 68.5
CiPaw.02G141800 Carya illinoinensis HOM05D000110 ORTHO05D000024 5.6e-47 191.4 172 59.9
CANSAT56G2066 Cannabis sativa HOM05D000110 ORTHO05D000024 1.2e-44 183.7 169 62.1
QL05p015284 Quercus lobata HOM05D000110 ORTHO05D000024 1.5e-44 183.3 186 61.3
CiPaw.01G226900 Carya illinoinensis HOM05D000110 ORTHO05D000024 5.8e-44 181.4 168 61.3
Hma1.2p1_0388F.1_g142180 Hydrangea macrophylla HOM05D000110 ORTHO05D000024 2.2e-43 179.5 171 63.2
MBI04_g06228_MAGBIO Magnolia biondii HOM05D000110 ORTHO05D000024 8.3e-43 177.6 170 63.5
Haze_15925 Corylus avellana HOM05D000110 ORTHO05D000024 1.2e-41 173.7 172 58.7
Cfa003604 Carpinus fangiana HOM05D000110 ORTHO05D000024 6.0e-41 171.4 172 58.1
QL05p015882 Quercus lobata HOM05D000110 ORTHO05D000024 1.7e-40 169.9 181 59.7
MBI01_g47445_MAGBIO Magnolia biondii HOM05D000110 ORTHO05D000024 1.9e-39 166.4 161 63.4
Aqoxy7G01285 Aquilegia oxysepala HOM05D000110 ORTHO05D000024 4.0e-37 158.7 170 57.6
Aqoxy7G01283 Aquilegia oxysepala HOM05D000110 ORTHO05D000024 5.2e-37 158.3 170 57.1
CSS0000707 Camellia sinensis var. sinensis HOM05D000110 ORTHO05D000024 4.4e-36 155.2 179 57.0
Prupe.3G052300 Prunus persica HOM05D000110 ORTHO05D000024 1.7e-35 153.3 179 53.1
Rhsim08G0231700 Rhododendron simsii HOM05D000110 ORTHO05D000024 3.7e-35 152.1 177 55.9
VMungo0331G0417 Vigna mungo HOM05D000110 ORTHO05D000024 1.2e-33 147.1 172 51.2
Duzib192G0964 Durio zibethinus HOM05D000110 ORTHO05D000024 2.1e-33 146.4 200 46.0
Duzib235G1055 Durio zibethinus HOM05D000110 ORTHO05D000024 2.1e-33 146.4 205 46.3
COL.COLO4_30611 Corchorus olitorius HOM05D000110 ORTHO05D000024 4.6e-33 145.2 216 45.4
DCAR_016172 Daucus carota HOM05D000110 ORTHO05D000024 2.3e-32 142.9 170 49.4
ClCG07G013640 Citrullus lanatus HOM05D000110 ORTHO05D000024 3.9e-32 142.1 172 54.1
Ciclev10026336m.g Citrus clementina HOM05D000110 ORTHO05D000024 5.1e-32 141.7 204 47.1
MD09G1195800 Malus domestica HOM05D000110 ORTHO05D000024 6.6e-32 141.4 175 52.0
Glyma.08G195300 Glycine max HOM05D000110 ORTHO05D000024 1.5e-31 140.2 173 54.3
MELO3C013043.2 Cucumis melo HOM05D000110 ORTHO05D000024 1.9e-31 139.8 168 54.8
CsaV3_3G043990 Cucumis sativus L. HOM05D000110 ORTHO05D000024 1.9e-31 139.8 170 51.8
Manes.04G137800 Manihot esculenta HOM05D000110 ORTHO05D000024 3.3e-31 139.0 208 43.8
RcHm_v2.0_Chr2g0142541 Rosa chinensis HOM05D000110 ORTHO05D000024 5.6e-31 138.3 182 48.4
Lj5C48T3 Lonicera japonica HOM05D000110 ORTHO05D000024 9.5e-31 137.5 203 45.8
Glyma.07G012100 Glycine max HOM05D000110 ORTHO05D000024 1.2e-30 137.1 173 54.9
CDE02G4033 Ceratophyllum demersum HOM05D000325 ORTHO05D043910 1.6e-30 136.7 166 51.8
Potri.003G034200 Populus trichocarpa HOM05D000110 ORTHO05D000024 2.8e-30 136.0 190 46.3
Cpa.g.sc131.40 Carica papaya HOM05D000110 ORTHO05D000024 8.1e-30 134.4 189 46.6
Ca_23303_v3 Cicer arietinum L. HOM05D000110 ORTHO05D000024 1.4e-29 133.7 170 50.0
Phvul.010G141400 Phaseolus vulgaris HOM05D000110 ORTHO05D000024 4.0e-29 132.1 168 52.4
Glyma.15G022800 Glycine max HOM05D000110 ORTHO05D000024 6.8e-29 131.3 174 50.0
Medtr8g015840 Medicago truncatula HOM05D000110 ORTHO05D000024 4.4e-28 128.6 169 51.5
Thecc.06G108300 Theobroma cacao HOM05D000110 ORTHO05D000024 5.8e-28 128.3 207 45.4
Lalb_Chr22g0351701 Lupinus albus HOM05D000110 ORTHO05D000024 1.3e-27 127.1 179 45.8
FAN05G1193 Fragaria x ananassa HOM05D000110 ORTHO05D000024 1.7e-27 126.7 170 48.8
Gohir.D10G063600 Gossypium hirsutum HOM05D000110 ORTHO05D000024 2.2e-27 126.3 202 43.6
Gorai.011G067500 Gossypium raimondii HOM05D000110 ORTHO05D000024 2.9e-27 125.9 202 44.1
Lj3g0024908 Lotus japonicus HOM05D000110 ORTHO05D000024 3.8e-27 125.6 178 47.2
Nitab4.5_0005816g0010 Nicotiana tabacum HOM05D000110 ORTHO05D000024 3.8e-27 125.6 177 51.4
TPR.G24243 Trifolium pratense HOM05D000110 ORTHO05D000024 3.8e-27 125.6 169 49.7
Duzib160G0187 Durio zibethinus HOM05D000110 ORTHO05D000024 4.9e-27 125.2 203 48.8
Manes.11G028600 Manihot esculenta HOM05D000110 ORTHO05D000024 8.4e-27 124.4 192 42.7
Psat4g193560 Pisum sativum HOM05D000110 ORTHO05D000024 2.4e-26 122.9 179 43.6
MD17G1176100 Malus domestica HOM05D000110 ORTHO05D000024 4.1e-26 122.1 179 46.4
arahy.Tifrunner.gnm1.ann1.R2DQAY Arachis hypogaea HOM05D000110 ORTHO05D000024 7.1e-26 121.3 192 45.3
Gohir.A10G062000 Gossypium hirsutum HOM05D000110 ORTHO05D000024 7.1e-26 121.3 200 42.5
Lj3g0020268 Lotus japonicus HOM05D000110 ORTHO05D000024 7.1e-26 121.3 180 47.2
VMungo1080G1253 Vigna mungo HOM05D000110 ORTHO05D000024 7.1e-26 121.3 171 48.0
Gohir.A05G133800 Gossypium hirsutum HOM05D000110 ORTHO05D000024 2.1e-25 119.8 201 42.8
Cc04_g02150 Coffea canephora HOM05D000110 ORTHO05D000024 2.7e-25 119.4 190 47.4
FAN02G1938 Fragaria x ananassa HOM05D000110 ORTHO05D000024 6.0e-25 118.2 170 46.5
Atru.chr1.3656 Acer truncatum HOM05D000110 ORTHO05D000024 7.8e-25 117.9 190 44.2
CAN.G1668.12 Capsicum annuum HOM05D000110 ORTHO05D000024 1.3e-24 117.1 180 51.1
FAN14G5883 Fragaria x ananassa HOM05D000110 ORTHO05D000024 1.3e-24 117.1 170 46.5
Nitab4.5_0001967g0020 Nicotiana tabacum HOM05D000110 ORTHO05D000024 1.3e-24 117.1 172 50.0
arahy.Tifrunner.gnm1.ann1.M9WVP0 Arachis hypogaea HOM05D000110 ORTHO05D000024 2.3e-24 116.3 192 42.2
Glyma.13G352000 Glycine max HOM05D000110 ORTHO05D000024 2.3e-24 116.3 175 48.0
AUR62023916 Chenopodium quinoa HOM05D000110 ORTHO05D000024 5.1e-24 115.2 180 47.2
Sed0000992 Sechium edule HOM05D000110 ORTHO05D000024 8.6e-24 114.4 168 49.4
Gohir.D05G135800 Gossypium hirsutum HOM05D000110 ORTHO05D000024 4.3e-23 112.1 205 39.5
Gorai.009G139800 Gossypium raimondii HOM05D000110 ORTHO05D000024 4.3e-23 112.1 205 39.5
AUR62038328 Chenopodium quinoa HOM05D000110 ORTHO05D000024 5.6e-23 111.7 178 50.6
FAN09G2093 Fragaria x ananassa HOM05D000110 ORTHO05D000024 5.6e-23 111.7 170 45.3
MBI01_g47086_MAGBIO Magnolia biondii HOM05D000110 ORTHO05D000024 1.2e-22 110.5 153 54.9
FvH4_6g32990 Fragaria vesca HOM05D000110 ORTHO05D000024 1.6e-22 110.2 165 45.5
DCAR_007612 Daucus carota HOM05D000110 ORTHO05D000024 2.8e-22 109.4 173 46.8
Phvul.005G161200 Phaseolus vulgaris HOM05D000110 ORTHO05D000024 8.1e-22 107.8 171 45.0
Sed0018674 Sechium edule HOM05D000110 ORTHO05D000024 8.1e-22 107.8 170 47.1
MSTRG.22601 Avicennia marina HOM05D000110 ORTHO05D000024 1.8e-21 106.7 176 44.3
Solyc06g062520.1 Solanum lycopersicum HOM05D000110 ORTHO05D000024 2.4e-21 106.3 167 46.1
CAN.G635.19 Capsicum annuum HOM05D000110 ORTHO05D000024 8.9e-21 104.4 170 43.5
PSO210G4285 Papaver somniferum HOM05D000110 ORTHO05D000024 8.9e-21 104.4 214 45.3
Eucgr.J02884 Eucalyptus grandis HOM05D000110 ORTHO05D000024 1.7e-19 100.1 187 38.0
Sopen06g022000 Solanum pennellii HOM05D000110 ORTHO05D000024 4.9e-19 98.6 167 50.3
arahy.Tifrunner.gnm1.ann1.4PTW9T Arachis hypogaea HOM05D000110 ORTHO05D000024 8.4e-19 97.8 190 43.2
arahy.Tifrunner.gnm1.ann1.90U3DG Arachis hypogaea HOM05D000110 ORTHO05D000024 8.4e-19 97.8 189 42.9
Ah.01g016920 Amaranthus hybridus HOM05D000110 ORTHO05D000024 3.2e-18 95.9 185 43.2
Solyc03g121400.1 Solanum lycopersicum HOM05D000110 ORTHO05D000024 3.2e-18 95.9 180 44.4
PGSC0003DMG400002507 Solanum tuberosum HOM05D000110 ORTHO05D000024 3.2e-18 95.9 177 44.1
HPP92_024013 Vanilla planifolia HOM05D000110 ORTHO05D000024 3.2e-18 95.9 176 46.0
Sopen03g040210 Solanum pennellii HOM05D000110 ORTHO05D000024 5.4e-18 95.1 179 45.8
Nitab4.5_0000255g0080 Nicotiana tabacum HOM05D000110 ORTHO05D000024 7.1e-18 94.7 172 48.3
vmacro18818 Vaccinium macrocarpon HOM05D000110 ORTHO05D000024 9.3e-18 94.4 176 43.8
PSO210G3538 Papaver somniferum HOM05D000110 ORTHO05D000024 1.6e-17 93.6 212 42.9
Lsat_1_v5_gn_1_36380 Lactuca sativa HOM05D000110 ORTHO05D000024 6.0e-17 91.7 178 43.3
Gohir.1Z049419 Gossypium hirsutum HOM05D000110 ORTHO05D000024 1.0e-16 90.9 174 40.8
Nitab4.5_0001483g0060 Nicotiana tabacum HOM05D000110 ORTHO05D000024 3.9e-16 89.0 168 47.0
TWI31G0952 Tripterygium wilfordii HOM05D000110 ORTHO05D000024 3.9e-16 89.0 185 38.4
Oeu052805.1 Olea europaea HOM05D000110 ORTHO05D000024 8.7e-16 87.8 174 39.1
HanXRQChr10g0313141 Helianthus annuus HOM05D000110 ORTHO05D000024 2.8e-14 82.8 175 36.0
Lsat_1_v5_gn_5_133940 Lactuca sativa HOM05D000110 ORTHO05D000024 2.8e-14 82.8 167 40.1
MSTRG.10997 Avicennia marina HOM05D000110 ORTHO05D000024 8.1e-14 81.3 178 37.6
SalBow6G2763 Salvia bowleyana HOM05D000110 ORTHO05D000024 8.1e-14 81.3 184 40.8
THA.LOC104806010 Tarenaya hassleriana HOM05D000110 ORTHO05D000024 4.0e-13 79.0 107 49.5
Migut.I01007 Erythranthe guttata HOM05D000110 ORTHO05D000024 9.0e-13 77.8 198 36.9
ATR0733G069 Amborella trichopoda HOM05D000110 ORTHO05D000024 2.6e-12 76.3 156 37.8
THA.LOC104817932 Tarenaya hassleriana HOM05D000110 ORTHO05D000024 8.4e-11 71.2 104 44.2
CSS0009351 Camellia sinensis var. sinensis HOM05D000110 ORTHO05D000024 5.4e-10 68.6 98 51.0
BcaC05g28185 Brassica carinata HOM05D000110 ORTHO05D000024 7.1e-10 68.2 94 46.8
BcaC05g28186 Brassica carinata HOM05D000110 ORTHO05D000024 7.1e-10 68.2 94 46.8
C05p42260 Brassica napus HOM05D000110 ORTHO05D000024 7.1e-10 68.2 94 46.8
BolC5t32954H Brassica oleracea HOM05D000110 ORTHO05D000024 7.1e-10 68.2 94 46.8
ATR0789G164 Amborella trichopoda HOM05D000110 ORTHO05D000024 9.3e-10 67.8 96 47.9
BcaB04g20596 Brassica carinata HOM05D000110 ORTHO05D000024 9.3e-10 67.8 101 45.5
BcaC09g49065 Brassica carinata HOM05D000110 ORTHO05D000024 9.3e-10 67.8 98 44.9
C01p42970 Brassica napus HOM05D000110 ORTHO05D000024 9.3e-10 67.8 98 44.9
BolC1t04242H Brassica oleracea HOM05D000110 ORTHO05D000024 9.3e-10 67.8 98 44.9
CARHR097180 Cardamine hirsuta HOM05D000110 ORTHO05D000024 9.3e-10 67.8 103 45.6
Peaxi162Scf00207g01131 Petunia axillaris HOM05D000110 ORTHO05D000024 9.3e-10 67.8 154 38.3
SGA_v2.0_scaffold68G22934 Striga asiatica HOM05D000110 ORTHO05D000024 9.3e-10 67.8 209 33.0
Thhalv10021538m.g Eutrema salsugineum HOM05D000110 ORTHO05D000024 1.2e-09 67.4 100 52.0
Sp3g19310 Schrenkiella parvula HOM05D000110 ORTHO05D000024 1.2e-09 67.4 99 44.4
Sc12g0009820 Simmondsia chinensis HOM05D000110 ORTHO05D000024 1.2e-09 67.4 86 47.7
Lsat_1_v5_gn_4_95900 Lactuca sativa HOM05D000110 ORTHO05D000024 1.6e-09 67.0 182 36.8
PGSC0003DMG400004877 Solanum tuberosum HOM05D001477 ORTHO05D001182 1.6e-09 67.0 111 39.6
BcaB04g19158 Brassica carinata HOM05D000110 ORTHO05D000024 2.1e-09 66.6 98 50.0
A05p27350 Brassica napus HOM05D000110 ORTHO05D000024 3.5e-09 65.9 95 45.3
BraA05t21627Z Brassica rapa HOM05D000110 ORTHO05D000024 3.5e-09 65.9 95 45.3
A01p33610 Brassica napus HOM05D000110 ORTHO05D000024 4.6e-09 65.5 99 43.4
BraA01t03473Z Brassica rapa HOM05D000110 ORTHO05D000024 4.6e-09 65.5 99 43.4
BcaB06g26217 Brassica carinata HOM05D000110 ORTHO05D000024 6.0e-09 65.1 93 52.7
Psat0s3476g0080 Pisum sativum HOM05D000110 ORTHO05D000024 1.0e-08 64.3 182 36.3
BcaC01g03513 Brassica carinata HOM05D000110 ORTHO05D000024 1.3e-08 63.9 101 49.5
A03p42160 Brassica napus HOM05D000110 ORTHO05D000024 1.3e-08 63.9 101 49.5
BolC3t17444H Brassica oleracea HOM05D000110 ORTHO05D000024 1.3e-08 63.9 101 49.5
BraA03t13369Z Brassica rapa HOM05D000110 ORTHO05D000024 1.3e-08 63.9 101 49.5
Aa31LG10G3100 Aethionema arabicum HOM05D000110 ORTHO05D000024 1.8e-08 63.5 186 34.4
C03p51610 Brassica napus HOM05D000110 ORTHO05D000024 3.0e-08 62.8 101 49.5
Carub.0003s2126 Capsella rubella HOM05D000110 ORTHO05D000024 6.7e-08 61.6 103 51.5
MD08G1040100 Malus domestica HOM05D000110 ORTHO05D000024 6.7e-08 61.6 99 42.4
AT3G21270 Arabidopsis thaliana HOM05D000110 ORTHO05D000024 1.1e-07 60.8 103 48.5
AL3G35310 Arabidopsis lyrata HOM05D000110 ORTHO05D000024 1.5e-07 60.5 105 49.5
EL10Ac9g21104 Beta vulgaris HOM05D000110 ORTHO05D000024 1.5e-07 60.5 97 47.4
Nn5g29390 Nelumbo nucifera HOM05D000110 ORTHO05D000024 1.5e-07 60.5 179 35.2
MD15G1034500 Malus domestica HOM05D000110 ORTHO05D000024 2.5e-07 59.7 107 40.2
QL06p043784 Quercus lobata HOM05D000110 ORTHO05D000024 2.5e-07 59.7 188 33.0
Solyc02g090220.3 Solanum lycopersicum HOM05D000110 ORTHO05D000024 3.3e-07 59.3 185 33.5
MBI16_g31472_MAGBIO Magnolia biondii HOM05D000110 ORTHO05D000024 4.3e-07 58.9 170 35.3
CiPaw.02G012100 Carya illinoinensis HOM05D000110 ORTHO05D000024 5.6e-07 58.5 194 31.4
Nn6g32126 Nelumbo nucifera HOM05D000110 ORTHO05D000024 5.6e-07 58.5 177 33.9
SGA_v2.0_scaffold4G02038 Striga asiatica HOM05D000110 ORTHO05D000024 7.4e-07 58.2 213 31.5
Sopen02g034910 Solanum pennellii HOM05D000110 ORTHO05D000024 9.6e-07 57.8 183 33.3
TAR625G0524 Trochodendron aralioides HOM05D000110 ORTHO05D000024 9.6e-07 57.8 174 33.3
Ah.01g004490 Amaranthus hybridus HOM05D000110 ORTHO05D000024 1.3e-06 57.4 155 32.9
Cpa.g.sc15.49 Carica papaya HOM05D000110 ORTHO05D000024 1.3e-06 57.4 188 30.3
Aa31LG8G7970 Aethionema arabicum HOM05D000110 ORTHO05D000024 1.6e-06 57.0 108 48.1
Haze_15192 Corylus avellana HOM05D000110 ORTHO05D000024 1.6e-06 57.0 188 31.9
Gohir.D12G068300 Gossypium hirsutum HOM05D000110 ORTHO05D000024 1.6e-06 57.0 182 29.7
Rhsim06G0041000 Rhododendron simsii HOM05D000110 ORTHO05D000024 1.6e-06 57.0 174 30.5
PGSC0003DMG400013105 Solanum tuberosum HOM05D000110 ORTHO05D000024 1.6e-06 57.0 90 41.1
GSVIVG01016887001 Vitis vinifera HOM05D000110 ORTHO05D000024 1.6e-06 57.0 26 100.0
BraA05t20845Z Brassica rapa HOM05D000110 ORTHO05D000024 2.1e-06 56.6 95 38.9
AL5G30560 Arabidopsis lyrata HOM05D000110 ORTHO05D000024 2.8e-06 56.2 196 31.1
AT1G51700 Arabidopsis thaliana HOM05D000110 ORTHO05D000024 2.8e-06 56.2 104 41.3
Gohir.A12G068500 Gossypium hirsutum HOM05D000110 ORTHO05D000024 2.8e-06 56.2 182 29.7
BcaC08g43933 Brassica carinata HOM05D000110 ORTHO05D000024 3.7e-06 55.8 100 41.0
C06p13270 Brassica napus HOM05D000110 ORTHO05D000024 3.7e-06 55.8 100 41.0
Gorai.008G071900 Gossypium raimondii HOM05D000110 ORTHO05D000024 3.7e-06 55.8 182 29.1
TAR628G0802 Trochodendron aralioides HOM05D000110 ORTHO05D000024 3.7e-06 55.8 84 44.0
BcaB01g00615 Brassica carinata HOM05D000110 ORTHO05D000024 4.8e-06 55.5 188 30.9
BcaB02g11273 Brassica carinata HOM05D000110 ORTHO05D000024 4.8e-06 55.5 95 38.9
HanXRQChr12g0361031 Helianthus annuus HOM05D000110 ORTHO05D000024 4.8e-06 55.5 172 34.3
AT4G00940 Arabidopsis thaliana HOM05D000110 ORTHO05D000024 6.2e-06 55.1 98 37.8
BraA09t39814Z Brassica rapa HOM05D000110 ORTHO05D000024 6.2e-06 55.1 173 30.6
Aa31LG4G18640 Aethionema arabicum HOM05D000110 ORTHO05D000024 8.1e-06 54.7 187 33.2
Eucgr.F03105 Eucalyptus grandis HOM05D000110 ORTHO05D000024 8.1e-06 54.7 32 81.2
PGSC0003DMG400010075 Solanum tuberosum HOM05D000110 ORTHO05D000024 8.1e-06 54.7 184 31.0
THA.LOC104801363 Tarenaya hassleriana HOM05D000110 ORTHO05D000024 8.1e-06 54.7 116 32.8
TWI56G0042 Tripterygium wilfordii HOM05D000110 ORTHO05D000024 8.1e-06 54.7 95 37.9


User provided reference genes

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