Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 6.4e-91 337.4 172 100.0
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 2.4e-66 255.8 175 76.6
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.1e-58 230.3 171 70.8
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 5.6e-55 218.0 150 74.7
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 1.2e-52 210.3 176 65.3
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 3.4e-52 208.8 166 63.9
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.7e-51 206.5 171 64.3
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 2.9e-51 205.7 171 67.3
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 1.4e-50 203.4 171 63.2
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 2.4e-50 202.6 178 62.9
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 7.1e-50 201.1 178 61.2
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.2e-49 200.3 171 63.7
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 1.6e-49 199.9 173 62.4
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 3.5e-49 198.7 162 66.7
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 4.6e-49 198.4 169 62.1
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 7.9e-49 197.6 184 59.8
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 1.0e-48 197.2 177 62.1
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 1.3e-48 196.8 180 60.0
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 1.8e-48 196.4 171 61.4
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 2.3e-48 196.1 175 62.9
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.3e-48 196.1 175 62.9
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 3.0e-48 195.7 184 59.2
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 5.1e-48 194.9 173 59.5
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 6.7e-48 194.5 175 62.3
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 6.7e-48 194.5 175 61.1
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 6.7e-48 194.5 171 63.7
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 8.7e-48 194.1 178 58.4
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.1e-47 193.7 177 62.1
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 1.1e-47 193.7 169 60.4
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.9e-47 193.0 171 64.3
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 1.9e-47 193.0 170 61.8
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 3.3e-47 192.2 176 58.0
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 3.3e-47 192.2 176 58.0
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 3.3e-47 192.2 171 62.0
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 4.3e-47 191.8 176 61.9
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 4.3e-47 191.8 179 59.8
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 5.6e-47 191.4 165 61.8
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 9.6e-47 190.7 173 57.2
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 9.6e-47 190.7 167 61.7
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 1.3e-46 190.3 164 60.4
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 2.1e-46 189.5 177 59.9
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 2.8e-46 189.1 162 61.1
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 3.7e-46 188.7 144 66.7
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 4.8e-46 188.3 172 59.3
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 4.8e-46 188.3 177 59.3
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 8.1e-46 187.6 171 60.2
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 1.1e-45 187.2 189 58.2
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 1.4e-45 186.8 176 59.7
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 2.4e-45 186.0 148 64.2
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 2.4e-45 186.0 178 59.6
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 2.4e-45 186.0 146 65.1
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 5.3e-45 184.9 171 59.1
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 6.9e-45 184.5 170 58.8
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 6.9e-45 184.5 180 56.7
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 3.4e-44 182.2 180 55.0
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 4.5e-44 181.8 181 53.6
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 4.5e-44 181.8 145 64.8
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 5.8e-44 181.4 138 66.7
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 7.6e-44 181.0 156 59.0
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 1.7e-43 179.9 163 58.9
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 1.7e-43 179.9 171 57.9
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 2.9e-43 179.1 161 62.1
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 2.9e-43 179.1 177 54.2
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 3.8e-43 178.7 164 56.1
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 6.4e-43 177.9 154 63.0
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 1.9e-42 176.4 178 56.2
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 3.2e-42 175.6 120 71.7
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 7.1e-42 174.5 169 56.8
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 9.3e-42 174.1 150 62.0
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 2.7e-41 172.6 167 57.5
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 2.7e-41 172.6 165 55.2
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 1.0e-40 170.6 240 45.8
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 1.8e-40 169.9 177 54.2
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 1.8e-40 169.9 186 52.2
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 2.3e-40 169.5 122 71.3
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 2.3e-40 169.5 175 52.6
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 6.7e-40 167.9 177 50.3
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 1.1e-39 167.2 207 51.2
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 1.9e-39 166.4 186 52.7
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 2.5e-39 166.0 173 51.4
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 3.3e-39 165.6 176 50.0
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 4.3e-39 165.2 167 52.7
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 5.6e-39 164.9 167 55.7
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 9.6e-39 164.1 174 51.7
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 9.6e-39 164.1 147 60.5
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 1.6e-38 163.3 175 51.4
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.6e-38 163.3 173 53.8
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 1.6e-38 163.3 169 52.7
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 2.1e-38 162.9 175 51.4
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 3.7e-38 162.2 172 52.3
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 3.7e-38 162.2 172 52.3
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 3.7e-38 162.2 176 50.6
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 4.8e-38 161.8 171 55.6
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 6.2e-38 161.4 172 51.7
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 6.2e-38 161.4 176 50.6
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 6.2e-38 161.4 176 50.6
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 6.2e-38 161.4 165 54.5
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 8.2e-38 161.0 162 50.6
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 1.4e-37 160.2 172 51.7
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 1.8e-37 159.8 169 49.1
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 1.2e-36 157.1 171 50.9
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 1.2e-36 157.1 138 60.1
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 2.0e-36 156.4 175 49.7
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 2.6e-36 156.0 121 63.6
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 4.5e-36 155.2 168 52.4
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 5.8e-36 154.8 148 54.1
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 1.3e-35 153.7 120 61.7
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 2.9e-35 152.5 170 49.4
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 1.4e-34 150.2 173 49.1
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.4e-34 150.2 115 71.3
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 7.1e-34 147.9 169 49.1
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 7.1e-34 147.9 154 50.6
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 7.1e-34 147.9 154 50.6
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 2.7e-33 146.0 135 57.8
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 2.3e-32 142.9 142 54.2
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 3.0e-32 142.5 221 41.2
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 3.9e-32 142.1 153 49.7
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 6.7e-32 141.4 156 54.5
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 8.7e-32 141.0 189 44.4
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 7.4e-31 137.9 120 57.5
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 2.6e-28 129.4 149 48.3
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 2.6e-28 129.4 124 54.8
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 1.3e-27 127.1 117 56.4
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 2.7e-25 119.4 148 47.3
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 3.6e-25 119.0 248 33.1
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 6.7e-24 114.8 128 49.2
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 6.7e-24 114.8 128 49.2
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 3.3e-23 112.5 100 57.0
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 3.7e-22 109.0 171 38.0
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 2.0e-20 103.2 173 38.7
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.0e-19 100.9 110 53.6
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 1.8e-16 90.1 172 35.5
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 1.1e-15 87.4 115 46.1
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 7.4e-15 84.7 103 44.7
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 2.8e-14 82.8 89 53.9
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 5.5e-10 68.6 58 58.6
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 9.4e-10 67.8 93 43.0
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 2.7e-09 66.2 93 43.0
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 3.6e-09 65.9 93 41.9
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 3.6e-09 65.9 93 41.9
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 1.1e-07 60.8 93 39.8
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 5.7e-07 58.5 45 57.8
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 7.4e-07 58.2 92 39.1
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 7.4e-07 58.2 92 39.1


User provided reference genes

Program Settings