Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g30183 Nelumbo nucifera HOM05D000020 ORTHO05D273849 5.2e-44 180.6 90 100.0
Nn3g21903 Nelumbo nucifera HOM05D000020 ORTHO05D010249 9.3e-09 63.5 36 83.3
Nn4g25398 Nelumbo nucifera HOM05D000020 ORTHO05D000156 2.7e-08 62.0 36 83.3
Aqoxy2G02529 Aquilegia oxysepala HOM05D000020 ORTHO05D010249 2.3e-07 58.9 36 77.8
Glyma.19G225900 Glycine max HOM05D000020 ORTHO05D010249 3.0e-07 58.5 37 70.3
Peaxi162Scf00035g02915 Petunia axillaris HOM05D000020 ORTHO05D000156 3.0e-07 58.5 35 77.1
TAR362G0074 Trochodendron aralioides HOM05D000020 ORTHO05D010249 3.0e-07 58.5 36 77.8
EL10Ac4g09548 Beta vulgaris HOM05D000020 ORTHO05D000156 3.9e-07 58.2 36 77.8
Glyma.02G285300 Glycine max HOM05D000020 ORTHO05D000156 3.9e-07 58.2 37 67.6
Potri.002G059600 Populus trichocarpa HOM05D000020 ORTHO05D000156 3.9e-07 58.2 36 75.0
Zm00001eb063380 Zea mays HOM05D000020 ORTHO05D037144 3.9e-07 58.2 36 75.0
Cpa.g.sc50.88 Carica papaya HOM05D000020 ORTHO05D000156 5.1e-07 57.8 36 69.4
RcHm_v2.0_Chr5g0012981 Rosa chinensis HOM05D000020 ORTHO05D000156 5.1e-07 57.8 37 67.6
CANSAT35G1826 Cannabis sativa HOM05D000020 ORTHO05D000156 6.6e-07 57.4 36 69.4
TWI12G0199 Tripterygium wilfordii HOM05D000020 ORTHO05D000156 6.6e-07 57.4 36 77.8
Zm00001eb092890 Zea mays HOM05D000020 ORTHO05D000156 6.6e-07 57.4 37 70.3
Actinidia06119 Actinidia chinensis HOM05D000020 ORTHO05D000156 8.7e-07 57.0 37 64.9
Actinidia11218 Actinidia chinensis HOM05D000020 ORTHO05D000156 8.7e-07 57.0 37 64.9
Lju99C6T9 Lonicera japonica HOM05D000020 ORTHO05D010249 8.7e-07 57.0 36 75.0
MBI19_g32731_MAGBIO Magnolia biondii HOM05D000020 ORTHO05D010249 8.7e-07 57.0 36 75.0
TAR624G0582 Trochodendron aralioides HOM05D000020 ORTHO05D000156 8.7e-07 57.0 36 69.4
MSTRG.5166 Avicennia marina HOM05D000020 ORTHO05D000156 1.1e-06 56.6 37 70.3
Prupe.6G305700 Prunus persica HOM05D000020 ORTHO05D010249 1.1e-06 56.6 36 75.0
Zm00001eb211360 Zea mays HOM05D000020 ORTHO05D037144 1.1e-06 56.6 36 75.0
Cfa006758 Carpinus fangiana HOM05D000020 ORTHO05D010249 1.5e-06 56.2 36 75.0
CDE01G0596 Ceratophyllum demersum HOM05D000020 ORTHO05D010249 1.5e-06 56.2 74 39.2
Haze_03997 Corylus avellana HOM05D000020 ORTHO05D010249 1.5e-06 56.2 36 75.0
Hma1.2p1_3304F.1_g335070 Hydrangea macrophylla HOM05D000020 ORTHO05D010249 1.5e-06 56.2 36 72.2
MD04G1187200 Malus domestica HOM05D000020 ORTHO05D010249 1.5e-06 56.2 36 75.0
Manes.09G180500 Manihot esculenta HOM05D000020 ORTHO05D010249 1.5e-06 56.2 36 75.0
Os03g0833600 Oryza sativa ssp. japonica HOM05D000020 ORTHO05D037144 1.5e-06 56.2 36 72.2
Sabra02G0048200 Salix brachista HOM05D000020 ORTHO05D000156 1.5e-06 56.2 36 72.2
Aqoxy4G00133 Aquilegia oxysepala HOM05D000020 ORTHO05D000156 1.9e-06 55.8 36 72.2
Aqoxy5G02789 Aquilegia oxysepala HOM05D000020 ORTHO05D010249 1.9e-06 55.8 36 75.0
MSTRG.16422 Avicennia marina HOM05D000020 ORTHO05D000156 1.9e-06 55.8 36 75.0
CANSAT64G2185 Cannabis sativa HOM05D000020 ORTHO05D000156 1.9e-06 55.8 36 72.2
ECA247G4099 Erigeron canadensis HOM05D000020 ORTHO05D000156 1.9e-06 55.8 37 67.6
Glyma.14G028400 Glycine max HOM05D000020 ORTHO05D000156 1.9e-06 55.8 37 64.9
MBI18_g09638_MAGBIO Magnolia biondii HOM05D000020 ORTHO05D010249 1.9e-06 55.8 36 75.0
Manes.15G117600 Manihot esculenta HOM05D000020 ORTHO05D000156 1.9e-06 55.8 37 64.9
Nitab4.5_0003573g0010 Nicotiana tabacum HOM05D000020 ORTHO05D010249 1.9e-06 55.8 36 75.0
Peaxi162Scf00111g00127 Petunia axillaris HOM05D000020 ORTHO05D000156 1.9e-06 55.8 36 75.0
Phvul.008G231700 Phaseolus vulgaris HOM05D000020 ORTHO05D000156 1.9e-06 55.8 37 64.9
Psat2g016240 Pisum sativum HOM05D000020 ORTHO05D000156 1.9e-06 55.8 36 66.7
QL03p010230 Quercus lobata HOM05D000020 ORTHO05D010249 1.9e-06 55.8 36 72.2
QL03p010465 Quercus lobata HOM05D000020 ORTHO05D010249 1.9e-06 55.8 36 72.2
VMungo0647G1469 Vigna mungo HOM05D000020 ORTHO05D000156 1.9e-06 55.8 37 64.9
arahy.Tifrunner.gnm1.ann1.9V629R Arachis hypogaea HOM05D000020 ORTHO05D000156 2.5e-06 55.5 37 64.9
arahy.Tifrunner.gnm1.ann1.VL1F08 Arachis hypogaea HOM05D000020 ORTHO05D000156 2.5e-06 55.5 37 64.9
FvH4_3g06330 Fragaria vesca HOM05D000020 ORTHO05D000156 2.5e-06 55.5 37 62.2
FAN11G0554 Fragaria x ananassa HOM05D000266 ORTHO05D000765 2.5e-06 55.5 37 62.2
FAN16G1481 Fragaria x ananassa HOM05D000020 ORTHO05D000156 2.5e-06 55.5 37 62.2
FAN21G0928 Fragaria x ananassa HOM05D000020 ORTHO05D000156 2.5e-06 55.5 37 62.2
FAN25G1447 Fragaria x ananassa HOM05D000020 ORTHO05D000156 2.5e-06 55.5 37 62.2
Oeu016544.1 Olea europaea HOM05D000020 ORTHO05D000156 2.5e-06 55.5 37 70.3
Potri.001G353400 Populus trichocarpa HOM05D000020 ORTHO05D000156 2.5e-06 55.5 36 69.4
Potri.005G003500 Populus trichocarpa HOM05D000020 ORTHO05D010249 2.5e-06 55.5 36 72.2
Sabra16G0232500 Salix brachista HOM05D000020 ORTHO05D000156 2.5e-06 55.5 36 66.7
MSTRG.20359 Avicennia marina HOM05D000020 ORTHO05D000156 3.3e-06 55.1 36 75.0
CSS0043010 Camellia sinensis var. sinensis HOM05D000020 ORTHO05D010249 3.3e-06 55.1 36 75.0
Dinv30327 Davidia involucrata HOM05D000020 ORTHO05D000156 3.3e-06 55.1 37 62.2
Lj1P617T22 Lonicera japonica HOM05D000020 ORTHO05D000156 3.3e-06 55.1 36 63.9
Sc17g0005200 Simmondsia chinensis HOM05D000020 ORTHO05D000156 3.3e-06 55.1 37 64.9
TAR365G0528 Trochodendron aralioides HOM05D000753 ORTHO05D010249 3.3e-06 55.1 36 72.2
TAR365G1179 Trochodendron aralioides HOM05D000020 ORTHO05D010249 3.3e-06 55.1 36 72.2
ATR1153G007 Amborella trichopoda HOM05D000020 ORTHO05D000156 4.3e-06 54.7 37 64.9
arahy.Tifrunner.gnm1.ann1.4T5FUB Arachis hypogaea HOM05D000020 ORTHO05D010249 4.3e-06 54.7 36 69.4
arahy.Tifrunner.gnm1.ann1.5WL870 Arachis hypogaea HOM05D000020 ORTHO05D010249 4.3e-06 54.7 36 69.4
EL10Ac9g22650 Beta vulgaris HOM05D000020 ORTHO05D000156 4.3e-06 54.7 37 67.6
Cpa.g.sc48.219 Carica papaya HOM05D000020 ORTHO05D000156 4.3e-06 54.7 36 72.2
CiPaw.07G035300 Carya illinoinensis HOM05D000020 ORTHO05D010249 4.3e-06 54.7 36 72.2
Glyma.03G228600 Glycine max HOM05D000020 ORTHO05D010249 4.3e-06 54.7 36 72.2
Manes.08G108000 Manihot esculenta HOM05D000020 ORTHO05D010249 4.3e-06 54.7 36 72.2
Nitab4.5_0001931g0020 Nicotiana tabacum HOM05D000020 ORTHO05D000156 4.3e-06 54.7 36 77.8
Nitab4.5_0002209g0070 Nicotiana tabacum HOM05D000020 ORTHO05D000156 4.3e-06 54.7 77 45.5
Nitab4.5_0003903g0010 Nicotiana tabacum HOM05D000020 ORTHO05D000156 4.3e-06 54.7 36 72.2
Nitab4.5_0014791g0010 Nicotiana tabacum HOM05D000020 ORTHO05D000156 4.3e-06 54.7 36 77.8
Peaxi162Scf00357g00119 Petunia axillaris HOM05D000020 ORTHO05D000156 4.3e-06 54.7 36 77.8
TAR626G0403 Trochodendron aralioides HOM05D000020 ORTHO05D000156 4.3e-06 54.7 36 63.9
GSVIVG01021386001 Vitis vinifera HOM05D000020 ORTHO05D000156 4.3e-06 54.7 37 64.9
Aqoxy1G01838 Aquilegia oxysepala HOM05D000020 ORTHO05D000156 5.6e-06 54.3 37 64.9
CiPaw.03G190000 Carya illinoinensis HOM05D000020 ORTHO05D000156 5.6e-06 54.3 37 67.6
Cc02_g35770 Coffea canephora HOM05D000020 ORTHO05D000156 5.6e-06 54.3 37 64.9
Haze_05506 Corylus avellana HOM05D000020 ORTHO05D000156 5.6e-06 54.3 37 64.9
Haze_05512 Corylus avellana HOM05D000020 ORTHO05D000156 5.6e-06 54.3 37 64.9
Eucgr.H01316 Eucalyptus grandis HOM05D000020 ORTHO05D010249 5.6e-06 54.3 36 72.2
Nitab4.5_0007842g0020 Nicotiana tabacum HOM05D000020 ORTHO05D000156 5.6e-06 54.3 36 72.2
Phvul.001G222500 Phaseolus vulgaris HOM05D000020 ORTHO05D010249 5.6e-06 54.3 36 72.2
TAR636G0148 Trochodendron aralioides HOM05D000020 ORTHO05D010249 5.6e-06 54.3 36 75.0
Ah.06g190640 Amaranthus hybridus HOM05D000020 ORTHO05D000156 7.3e-06 53.9 36 72.2
CiPaw.09G127100 Carya illinoinensis HOM05D000020 ORTHO05D000156 7.3e-06 53.9 36 66.7
Ca_09278_v3 Cicer arietinum L. HOM05D000020 ORTHO05D000156 7.3e-06 53.9 36 69.4
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 7.3e-06 53.9 35 68.6
CsaV3_1G038020 Cucumis sativus L. HOM05D000020 ORTHO05D000156 7.3e-06 53.9 36 69.4
Migut.N00968 Erythranthe guttata HOM05D000020 ORTHO05D000156 7.3e-06 53.9 36 69.4
Gohir.A09G078400 Gossypium hirsutum HOM05D000020 ORTHO05D000156 7.3e-06 53.9 37 64.9
Gohir.D09G078900 Gossypium hirsutum HOM05D000020 ORTHO05D000156 7.3e-06 53.9 37 64.9
Gorai.006G093900 Gossypium raimondii HOM05D000020 ORTHO05D000156 7.3e-06 53.9 37 64.9
PSO761G0040 Papaver somniferum HOM05D000020 ORTHO05D010249 7.3e-06 53.9 36 72.2
Potri.005G202400 Populus trichocarpa HOM05D000020 ORTHO05D000156 7.3e-06 53.9 36 69.4
Potri.013G003500 Populus trichocarpa HOM05D000020 ORTHO05D010249 7.3e-06 53.9 36 69.4
QL05p060303 Quercus lobata HOM05D000020 ORTHO05D000156 7.3e-06 53.9 36 72.2
Sabra05G0153800 Salix brachista HOM05D000020 ORTHO05D000156 7.3e-06 53.9 36 69.4
Sed0019292 Sechium edule HOM05D000020 ORTHO05D000156 7.3e-06 53.9 37 64.9
Hund21838 Selenicereus undatus HOM05D000020 ORTHO05D000156 7.3e-06 53.9 36 72.2
TPR.G12603 Trifolium pratense HOM05D000020 ORTHO05D000156 7.3e-06 53.9 36 66.7
vmacro01604 Vaccinium macrocarpon HOM05D000020 ORTHO05D000156 7.3e-06 53.9 36 75.0
Actinidia11685 Actinidia chinensis HOM05D007830 ORTHO05D009947 9.6e-06 53.5 36 69.4
Actinidia16910 Actinidia chinensis HOM05D000020 ORTHO05D000156 9.6e-06 53.5 36 69.4
ClCG03G007150 Citrullus lanatus HOM05D000020 ORTHO05D000156 9.6e-06 53.5 37 62.2
Ciclev10011295m.g Citrus clementina HOM05D000020 ORTHO05D010249 9.6e-06 53.5 36 72.2
MELO3C002709.2 Cucumis melo HOM05D000020 ORTHO05D000156 9.6e-06 53.5 37 62.2
CsaV3_1G032730 Cucumis sativus L. HOM05D000020 ORTHO05D000156 9.6e-06 53.5 37 62.2
DCAR_005249 Daucus carota HOM05D000020 ORTHO05D000156 9.6e-06 53.5 36 72.2
Dinv24505 Davidia involucrata HOM05D000020 ORTHO05D010249 9.6e-06 53.5 36 72.2
Glyma.08G122400 Glycine max HOM05D000020 ORTHO05D000156 9.6e-06 53.5 37 62.2
Medtr3g048280 Medicago truncatula HOM05D000020 ORTHO05D000156 9.6e-06 53.5 37 62.2
Oeu040041.1 Olea europaea HOM05D000020 ORTHO05D000156 9.6e-06 53.5 36 72.2
Potri.011G078500 Populus trichocarpa HOM05D000020 ORTHO05D000156 9.6e-06 53.5 36 69.4
PGR031G3951 Punica granatum HOM05D000020 ORTHO05D010249 9.6e-06 53.5 36 72.2
Sc01g0010660 Simmondsia chinensis HOM05D000020 ORTHO05D000156 9.6e-06 53.5 37 67.6
Thecc.06G157100 Theobroma cacao HOM05D000020 ORTHO05D000156 9.6e-06 53.5 37 64.9
vmacro12465 Vaccinium macrocarpon HOM05D000020 ORTHO05D000156 9.6e-06 53.5 36 66.7
VMungo1383G3591 Vigna mungo HOM05D000020 ORTHO05D010249 9.6e-06 53.5 36 69.4
GSVIVG01031317001 Vitis vinifera HOM05D000020 ORTHO05D010249 9.6e-06 53.5 36 72.2


User provided reference genes

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