Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g29593 Nelumbo nucifera HOM05D000682 ORTHO05D000510 5.8e-47 190.7 103 100.0
BcaNung06923 Brassica carinata HOM05D000682 ORTHO05D000510 3.0e-11 72.0 69 66.7
Actinidia13310 Actinidia chinensis HOM05D000682 ORTHO05D000510 2.4e-08 62.4 45 75.6
Ah.16g105280 Amaranthus hybridus HOM05D000682 ORTHO05D000510 2.4e-08 62.4 45 73.3
TAR636G2441 Trochodendron aralioides HOM05D000682 ORTHO05D000510 2.4e-08 62.4 45 75.6
Actinidia31223 Actinidia chinensis HOM05D000682 ORTHO05D000510 4.0e-08 61.6 45 73.3
Ciclev10008167m.g Citrus clementina HOM05D000682 ORTHO05D000510 4.0e-08 61.6 45 75.6
MBI04_g29970_MAGBIO Magnolia biondii HOM05D000682 ORTHO05D000510 4.0e-08 61.6 45 73.3
MBI04_g43861_MAGBIO Magnolia biondii HOM05D000682 ORTHO05D000510 4.0e-08 61.6 45 73.3
CAN.G309.80 Capsicum annuum HOM05D000682 ORTHO05D000510 5.3e-08 61.2 43 76.7
CiPaw.07G207000 Carya illinoinensis HOM05D000682 ORTHO05D000510 5.3e-08 61.2 45 73.3
CSS0014330 Camellia sinensis var. sinensis HOM05D000682 ORTHO05D000510 6.9e-08 60.8 42 78.6
CSS0033435 Camellia sinensis var. sinensis HOM05D000682 ORTHO05D000510 6.9e-08 60.8 45 71.1
Dinv14226 Davidia involucrata HOM05D000682 ORTHO05D000510 6.9e-08 60.8 45 73.3
Duzib168G0316 Durio zibethinus HOM05D000682 ORTHO05D000510 6.9e-08 60.8 45 73.3
Glyma.06G082000 Glycine max HOM05D000682 ORTHO05D000510 6.9e-08 60.8 45 68.9
Lj7C707T1 Lonicera japonica HOM05D000682 ORTHO05D000510 6.9e-08 60.8 43 74.4
Manes.11G038700 Manihot esculenta HOM05D000682 ORTHO05D000510 6.9e-08 60.8 44 72.7
Sopen11g028990 Solanum pennellii HOM05D000682 ORTHO05D000510 6.9e-08 60.8 43 76.7
THA.LOC104803812 Tarenaya hassleriana HOM05D000682 ORTHO05D000510 6.9e-08 60.8 44 72.7
CiPaw.08G023600 Carya illinoinensis HOM05D000682 ORTHO05D000510 9.0e-08 60.5 44 72.7
Eucgr.C01582 Eucalyptus grandis HOM05D000682 ORTHO05D000510 9.0e-08 60.5 45 66.7
Glyma.04G080300 Glycine max HOM05D000682 ORTHO05D000510 9.0e-08 60.5 45 66.7
HanXRQChr01g0029591 Helianthus annuus HOM05D000682 ORTHO05D000510 9.0e-08 60.5 45 71.1
Lsat_1_v5_gn_1_49781 Lactuca sativa HOM05D000682 ORTHO05D000510 9.0e-08 60.5 45 71.1
Lsat_1_v5_gn_5_34141 Lactuca sativa HOM05D000682 ORTHO05D000510 9.0e-08 60.5 43 74.4
PGR044G0439 Punica granatum HOM05D000682 ORTHO05D000510 9.0e-08 60.5 45 71.1
Solyc11g071310.1 Solanum lycopersicum HOM05D000682 ORTHO05D000510 9.0e-08 60.5 43 74.4
PGSC0003DMG400018589 Solanum tuberosum HOM05D000682 ORTHO05D000510 9.0e-08 60.5 42 78.6
Aqoxy7G01633 Aquilegia oxysepala HOM05D000682 ORTHO05D000510 1.2e-07 60.1 44 75.0
Dinv30255 Davidia involucrata HOM05D000682 ORTHO05D000510 1.2e-07 60.1 45 73.3
Nitab4.5_0000664g0340 Nicotiana tabacum HOM05D000682 ORTHO05D000510 1.2e-07 60.1 43 74.4
Nitab4.5_0001567g0020 Nicotiana tabacum HOM05D000682 ORTHO05D000510 1.2e-07 60.1 43 74.4
Peaxi162Scf00276g00413 Petunia axillaris HOM05D000682 ORTHO05D000510 1.2e-07 60.1 43 74.4
Potri.006G242100 Populus trichocarpa HOM05D000682 ORTHO05D000510 1.2e-07 60.1 45 71.1
Rhsim02G0182100 Rhododendron simsii HOM05D000682 ORTHO05D000510 1.2e-07 60.1 45 71.1
SGA_v2.0_scaffold27G11539 Striga asiatica HOM05D000682 ORTHO05D000510 1.2e-07 60.1 43 74.4
TAR383G0316 Trochodendron aralioides HOM05D000682 ORTHO05D000510 1.2e-07 60.1 45 71.1
HPP92_007788 Vanilla planifolia HOM05D000682 ORTHO05D000510 1.2e-07 60.1 45 73.3
GSVIVG01017062001 Vitis vinifera HOM05D000682 ORTHO05D000510 1.2e-07 60.1 44 72.7
Eucgr.F03030 Eucalyptus grandis HOM05D000682 ORTHO05D000510 1.5e-07 59.7 44 75.0
PGSC0003DMG400010833 Solanum tuberosum HOM05D000682 ORTHO05D000510 1.5e-07 59.7 43 72.1
TAR624G0380 Trochodendron aralioides HOM05D000682 ORTHO05D000510 1.5e-07 59.7 45 71.1
Gohir.A07G023900 Gossypium hirsutum HOM05D000682 ORTHO05D000510 2.0e-07 59.3 45 71.1
Gohir.D07G027500 Gossypium hirsutum HOM05D000682 ORTHO05D000510 2.0e-07 59.3 45 71.1
Gorai.001G028700 Gossypium raimondii HOM05D000682 ORTHO05D000510 2.0e-07 59.3 45 71.1
Potri.018G037400 Populus trichocarpa HOM05D000682 ORTHO05D000510 2.0e-07 59.3 45 71.1
Sc09g0009100 Simmondsia chinensis HOM05D000682 ORTHO05D000510 2.0e-07 59.3 45 71.1
GSVIVG01035669001 Vitis vinifera HOM05D000682 ORTHO05D000510 2.0e-07 59.3 44 75.0
CSS0032642 Camellia sinensis var. sinensis HOM05D000682 ORTHO05D000510 2.6e-07 58.9 45 71.1
CSS0050213 Camellia sinensis var. sinensis HOM05D000682 ORTHO05D000510 2.6e-07 58.9 45 71.1
CANSAT25G1432 Cannabis sativa HOM05D000682 ORTHO05D000510 2.6e-07 58.9 45 68.9
CDE05G0534 Ceratophyllum demersum HOM05D000682 ORTHO05D000510 2.6e-07 58.9 45 66.7
DCAR_003114 Daucus carota HOM05D000682 ORTHO05D003223 2.6e-07 58.9 42 73.8
MBI01_g39983_MAGBIO Magnolia biondii HOM05D000682 ORTHO05D000510 2.6e-07 58.9 45 66.7
Atru.chr7.2159 Acer truncatum HOM05D000682 ORTHO05D000510 3.4e-07 58.5 45 64.4
AL4G17410 Arabidopsis lyrata HOM05D000682 ORTHO05D000510 3.4e-07 58.5 44 75.0
CAN.G21.28 Capsicum annuum HOM05D000682 ORTHO05D000510 3.4e-07 58.5 43 69.8
Haze_21855 Corylus avellana HOM05D000682 ORTHO05D000510 3.4e-07 58.5 45 68.9
Haze_21856 Corylus avellana HOM05D000682 ORTHO05D000510 3.4e-07 58.5 45 68.9
ECA248G0382 Erigeron canadensis HOM05D000682 ORTHO05D000510 3.4e-07 58.5 45 68.9
Eucgr.C01581 Eucalyptus grandis HOM05D000682 ORTHO05D000510 3.4e-07 58.5 45 68.9
Gohir.A05G048300 Gossypium hirsutum HOM05D000682 ORTHO05D000510 3.4e-07 58.5 45 71.1
Gohir.D05G050200 Gossypium hirsutum HOM05D000682 ORTHO05D000510 3.4e-07 58.5 45 71.1
Gorai.009G051700 Gossypium raimondii HOM05D000682 ORTHO05D000510 3.4e-07 58.5 45 71.1
HanXRQChr11g0351741 Helianthus annuus HOM05D000682 ORTHO05D000510 3.4e-07 58.5 45 68.9
Manes.16G066000 Manihot esculenta HOM05D000682 ORTHO05D000510 3.4e-07 58.5 45 71.1
Medtr8g088070 Medicago truncatula HOM05D000682 ORTHO05D000510 3.4e-07 58.5 45 68.9
Medtr8g088080 Medicago truncatula HOM05D000682 ORTHO05D000510 3.4e-07 58.5 44 70.5
Actinidia15730 Actinidia chinensis HOM05D000682 ORTHO05D000510 4.5e-07 58.2 45 68.9
MSTRG.11718 Avicennia marina HOM05D000682 ORTHO05D000510 4.5e-07 58.2 45 71.1
COL.COLO4_18695 Corchorus olitorius HOM05D000682 ORTHO05D000510 4.5e-07 58.2 45 68.9
Thhalv10000151m.g Eutrema salsugineum HOM05D000682 ORTHO05D000510 4.5e-07 58.2 44 72.7
QL12p026451 Quercus lobata HOM05D000682 ORTHO05D000510 4.5e-07 58.2 45 71.1
Cc08_g08990 Coffea canephora HOM05D000682 ORTHO05D000510 5.8e-07 57.8 43 69.8
Dinv39973 Davidia involucrata HOM05D000682 ORTHO05D006241 5.8e-07 57.8 44 68.2
Migut.A00246 Erythranthe guttata HOM05D000682 ORTHO05D000510 5.8e-07 57.8 43 72.1
Manes.03G062900 Manihot esculenta HOM05D000682 ORTHO05D000510 5.8e-07 57.8 45 66.7
Prupe.1G452300 Prunus persica HOM05D000682 ORTHO05D000510 5.8e-07 57.8 43 69.8
PGR031G2311 Punica granatum HOM05D000682 ORTHO05D000510 5.8e-07 57.8 45 71.1
SalBow4G1047 Salvia bowleyana HOM05D000682 ORTHO05D000510 5.8e-07 57.8 43 72.1
Solyc08g068290.3 Solanum lycopersicum HOM05D000682 ORTHO05D000510 5.8e-07 57.8 43 72.1
Sopen08g022140 Solanum pennellii HOM05D000682 ORTHO05D000510 5.8e-07 57.8 43 72.1
arahy.Tifrunner.gnm1.ann1.LFDJ4V Arachis hypogaea HOM05D000682 ORTHO05D000510 7.6e-07 57.4 44 70.5
arahy.Tifrunner.gnm1.ann1.PL74VK Arachis hypogaea HOM05D000682 ORTHO05D000510 7.6e-07 57.4 44 70.5
Dinv38030 Davidia involucrata HOM05D000682 ORTHO05D000510 7.6e-07 57.4 44 68.2
Manes.04G128700 Manihot esculenta HOM05D000682 ORTHO05D000510 7.6e-07 57.4 44 70.5
Sp4g05380 Schrenkiella parvula HOM05D000682 ORTHO05D000510 7.6e-07 57.4 44 72.7
Thecc.09G040000 Theobroma cacao HOM05D000682 ORTHO05D000510 7.6e-07 57.4 45 68.9
TPR.G6753 Trifolium pratense HOM05D000682 ORTHO05D000510 7.6e-07 57.4 44 70.5
TWI34G1670 Tripterygium wilfordii HOM05D000682 ORTHO05D000510 7.6e-07 57.4 45 66.7
Dinv30491 Davidia involucrata HOM05D000682 ORTHO05D000510 9.9e-07 57.0 42 73.8
Duzib187G0737 Durio zibethinus HOM05D000682 ORTHO05D000510 9.9e-07 57.0 43 72.1
Lj4g0002929 Lotus japonicus HOM05D000682 ORTHO05D000510 9.9e-07 57.0 44 68.2
Lalb_Chr14g0362421 Lupinus albus HOM05D000682 ORTHO05D000510 9.9e-07 57.0 45 64.4
Psat7g066880 Pisum sativum HOM05D000682 ORTHO05D000510 9.9e-07 57.0 44 68.2
PGR102G0626 Punica granatum HOM05D000682 ORTHO05D000510 9.9e-07 57.0 44 63.6
SHI10972 Sapria himalayana HOM05D000682 ORTHO05D000510 9.9e-07 57.0 44 70.5
AT2G25737 Arabidopsis thaliana HOM05D000682 ORTHO05D000510 1.3e-06 56.6 44 72.7
DCAR_000745 Daucus carota HOM05D000682 ORTHO05D000510 1.3e-06 56.6 42 71.4
DCAR_004496 Daucus carota HOM05D000682 ORTHO05D000510 1.3e-06 56.6 42 73.8
Lalb_Chr08g0243261 Lupinus albus HOM05D000682 ORTHO05D000510 1.3e-06 56.6 44 65.9
Manes.04G128550 Manihot esculenta HOM05D000682 ORTHO05D000510 1.3e-06 56.6 44 68.2
BcaC02g08329 Brassica carinata HOM05D000682 ORTHO05D000510 1.7e-06 56.2 44 72.7
C04p55620 Brassica napus HOM05D000682 ORTHO05D000510 1.7e-06 56.2 44 72.7
BolC4t27093H Brassica oleracea HOM05D000682 ORTHO05D000510 1.7e-06 56.2 44 72.7
Carub.0004s0552 Capsella rubella HOM05D000682 ORTHO05D000510 1.7e-06 56.2 44 72.7
Cpa.g.sc78.79 Carica papaya HOM05D000682 ORTHO05D000510 1.7e-06 56.2 43 65.1
AUR62009328 Chenopodium quinoa HOM05D000682 ORTHO05D000510 1.7e-06 56.2 43 65.1
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 1.7e-06 56.2 43 65.1
Ciclev10025511m.g Citrus clementina HOM05D000682 ORTHO05D000510 1.7e-06 56.2 44 68.2
Eucgr.C02892 Eucalyptus grandis HOM05D000682 ORTHO05D000510 1.7e-06 56.2 45 64.4
Manes.04G128800 Manihot esculenta HOM05D000682 ORTHO05D000510 1.7e-06 56.2 44 65.9
Oeu012184.1 Olea europaea HOM05D000682 ORTHO05D000510 1.7e-06 56.2 43 72.1
Oeu031572.1 Olea europaea HOM05D000682 ORTHO05D000510 1.7e-06 56.2 43 69.8
Phvul.009G106400 Phaseolus vulgaris HOM05D000682 ORTHO05D000510 1.7e-06 56.2 45 62.2
PGR102G1397 Punica granatum HOM05D000682 ORTHO05D000510 1.7e-06 56.2 44 65.9
QL05p022110 Quercus lobata HOM05D000682 ORTHO05D000510 1.7e-06 56.2 44 65.9
vmacro11078 Vaccinium macrocarpon HOM05D000682 ORTHO05D000510 1.7e-06 56.2 45 66.7
PSO229G0030 Papaver somniferum HOM05D000682 ORTHO05D000510 2.2e-06 55.8 44 68.2
PSO229G0066 Papaver somniferum HOM05D000682 ORTHO05D000510 2.2e-06 55.8 44 68.2
Potri.003G053000 Populus trichocarpa HOM05D000682 ORTHO05D000510 2.2e-06 55.8 44 68.2
Rhsim12G0199800 Rhododendron simsii HOM05D000682 ORTHO05D000510 2.2e-06 55.8 42 69.0
Aa31LG5G9930 Aethionema arabicum HOM05D000682 ORTHO05D000510 2.9e-06 55.5 44 68.2
BcaC01g04907 Brassica carinata HOM05D000682 ORTHO05D000510 2.9e-06 55.5 44 68.2
C03p32460 Brassica napus HOM05D000682 ORTHO05D000510 2.9e-06 55.5 44 68.2
BolC3t15587H Brassica oleracea HOM05D000682 ORTHO05D000510 2.9e-06 55.5 44 68.2
BraA03t11918Z Brassica rapa HOM05D000682 ORTHO05D000510 2.9e-06 55.5 44 68.2
CSS0013164 Camellia sinensis var. sinensis HOM05D000682 ORTHO05D000510 2.9e-06 55.5 42 69.0
Ciclev10025503m.g Citrus clementina HOM05D000682 ORTHO05D000510 2.9e-06 55.5 44 68.2
CsaV3_3G047440 Cucumis sativus L. HOM05D000682 ORTHO05D000510 2.9e-06 55.5 45 60.0
Lalb_Chr23g0269451 Lupinus albus HOM05D000682 ORTHO05D000510 2.9e-06 55.5 45 66.7
Medtr3g109950 Medicago truncatula HOM05D000682 ORTHO05D000510 2.9e-06 55.5 45 66.7
PSO782G1407 Papaver somniferum HOM05D000682 ORTHO05D000510 2.9e-06 55.5 45 66.7
PSO832G2406 Papaver somniferum HOM05D000682 ORTHO05D000510 2.9e-06 55.5 45 66.7
HPP92_023935 Vanilla planifolia HOM05D000682 ORTHO05D000510 2.9e-06 55.5 44 68.2
HPP92_023956 Vanilla planifolia HOM05D000682 ORTHO05D000510 2.9e-06 55.5 44 68.2
ATR0315G142 Amborella trichopoda HOM05D000682 ORTHO05D000510 3.8e-06 55.1 43 65.1
CARHR115500 Cardamine hirsuta HOM05D000682 ORTHO05D000510 3.8e-06 55.1 44 68.2
Nitab4.5_0000052g0160 Nicotiana tabacum HOM05D000682 ORTHO05D000510 3.8e-06 55.1 43 67.4
Nitab4.5_0007240g0030 Nicotiana tabacum HOM05D000682 ORTHO05D000510 3.8e-06 55.1 43 67.4
Os09g0344800 Oryza sativa ssp. japonica HOM05D000682 ORTHO05D000510 3.8e-06 55.1 42 73.8
CiPaw.02G149400 Carya illinoinensis HOM05D000682 ORTHO05D000510 4.9e-06 54.7 44 68.2
Glyma.14G142300 Glycine max HOM05D000682 ORTHO05D000510 4.9e-06 54.7 44 63.6
Nn1g05029 Nelumbo nucifera HOM05D000682 ORTHO05D000510 4.9e-06 54.7 42 71.4
Nitab4.5_0000434g0080 Nicotiana tabacum HOM05D000682 ORTHO05D000510 4.9e-06 54.7 44 68.2
Nitab4.5_0004711g0030 Nicotiana tabacum HOM05D000682 ORTHO05D000510 4.9e-06 54.7 44 68.2
TAR628G0794 Trochodendron aralioides HOM05D000682 ORTHO05D000510 4.9e-06 54.7 42 69.0
Actinidia14663 Actinidia chinensis HOM05D000682 ORTHO05D000510 6.4e-06 54.3 45 66.7
A03p27050 Brassica napus HOM05D000682 ORTHO05D000510 6.4e-06 54.3 44 65.9
CANSAT56G0885 Cannabis sativa HOM05D000682 ORTHO05D000510 6.4e-06 54.3 45 66.7
CAN.G358.105 Capsicum annuum HOM05D000682 ORTHO05D000510 6.4e-06 54.3 44 65.9
CiPaw.01G237000 Carya illinoinensis HOM05D000682 ORTHO05D000510 6.4e-06 54.3 44 68.2
CiPaw.02G149200 Carya illinoinensis HOM05D000682 ORTHO05D000510 6.4e-06 54.3 44 68.2
Duzib150G0866 Durio zibethinus HOM05D000682 ORTHO05D000510 6.4e-06 54.3 45 66.7
Glyma.05G164800 Glycine max HOM05D000682 ORTHO05D000510 6.4e-06 54.3 44 65.9
Glyma.08G122233 Glycine max HOM05D000682 ORTHO05D000510 6.4e-06 54.3 44 65.9
Hma1.2p1_0422F.1_g150120 Hydrangea macrophylla HOM05D000682 ORTHO05D000510 6.4e-06 54.3 45 62.2
MD08G1118000 Malus domestica HOM05D000682 ORTHO05D000510 6.4e-06 54.3 45 62.2
MD15G1097500 Malus domestica HOM05D000682 ORTHO05D000510 6.4e-06 54.3 45 62.2
Oeu063945.1 Olea europaea HOM05D000682 ORTHO05D000510 6.4e-06 54.3 42 66.7
Peaxi162Scf00515g00431 Petunia axillaris HOM05D000682 ORTHO05D000510 6.4e-06 54.3 44 65.9
Phvul.002G245000 Phaseolus vulgaris HOM05D000682 ORTHO05D000510 6.4e-06 54.3 44 65.9
Potri.001G182700 Populus trichocarpa HOM05D000682 ORTHO05D000510 6.4e-06 54.3 42 66.7
Potri.007G026800 Populus trichocarpa HOM05D000682 ORTHO05D000510 6.4e-06 54.3 42 69.0
Sabra07G0023500 Salix brachista HOM05D000682 ORTHO05D000510 6.4e-06 54.3 42 69.0
TPR.G1373 Trifolium pratense HOM05D000682 ORTHO05D000510 6.4e-06 54.3 45 64.4
unitig_748.g8215 Utricularia gibba HOM05D000682 ORTHO05D000510 6.4e-06 54.3 43 67.4
vmacro12725 Vaccinium macrocarpon HOM05D000682 ORTHO05D000510 6.4e-06 54.3 42 69.0
VMungo0251G2166 Vigna mungo HOM05D000682 ORTHO05D000510 6.4e-06 54.3 44 65.9
VMungo0647G0967 Vigna mungo HOM05D000682 ORTHO05D000510 6.4e-06 54.3 42 64.3
Ah.10g035230 Amaranthus hybridus HOM05D000682 ORTHO05D000510 8.4e-06 53.9 43 62.8
Cc07_g09400 Coffea canephora HOM05D000682 ORTHO05D000510 8.4e-06 53.9 44 63.6
Duzib147G1497 Durio zibethinus HOM05D000682 ORTHO05D000510 8.4e-06 53.9 44 65.9
FAN15G0292 Fragaria x ananassa HOM05D000682 ORTHO05D000510 8.4e-06 53.9 42 71.4
FAN20G0049 Fragaria x ananassa HOM05D000682 ORTHO05D000510 8.4e-06 53.9 42 71.4
FAN27G2850 Fragaria x ananassa HOM05D000682 ORTHO05D000510 8.4e-06 53.9 42 71.4
Nn5g29571 Nelumbo nucifera HOM05D000682 ORTHO05D000510 8.4e-06 53.9 42 64.3


User provided reference genes

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