Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25293 Nelumbo nucifera HOM05D006316 ORTHO05D008032 3.0e-131 471.9 241 100.0
GSVIVG01017710001 Vitis vinifera HOM05D006316 ORTHO05D008032 6.3e-113 411.0 240 82.5
CiPaw.01G127100 Carya illinoinensis HOM05D006316 ORTHO05D008032 3.8e-110 401.7 241 82.6
TAR365G1184 Trochodendron aralioides HOM05D006316 ORTHO05D008032 6.6e-110 401.0 264 78.8
Manes.05G122900 Manihot esculenta HOM05D006316 ORTHO05D008032 8.6e-110 400.6 241 80.9
CSS0037556 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 4.3e-109 398.3 235 81.3
CsaV3_3G015610 Cucumis sativus L. HOM05D006316 ORTHO05D008032 4.3e-109 398.3 241 80.5
MELO3C006760.2 Cucumis melo HOM05D006316 ORTHO05D008032 5.6e-109 397.9 241 80.9
Aqoxy2G02444 Aquilegia oxysepala HOM05D006316 ORTHO05D008032 7.3e-109 397.5 241 80.1
QL06p014723 Quercus lobata HOM05D006316 ORTHO05D008032 9.5e-109 397.1 240 81.2
CSS0049495 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 2.1e-108 396.0 235 80.9
Lj6A704G50 Lonicera japonica HOM05D006316 ORTHO05D008032 4.7e-108 394.8 241 78.4
Cc07_g19930 Coffea canephora HOM05D006316 ORTHO05D008032 1.4e-107 393.3 234 79.5
DCAR_002560 Daucus carota HOM05D006316 ORTHO05D008032 1.5e-106 389.8 231 81.4
PGR031G3724 Punica granatum HOM05D006316 ORTHO05D008032 3.4e-106 388.7 241 78.8
Haze_00749 Corylus avellana HOM05D006316 ORTHO05D008032 4.4e-106 388.3 221 86.4
Glyma.13G117200 Glycine max HOM05D006316 ORTHO05D008032 4.4e-106 388.3 230 81.3
TWI74G1230 Tripterygium wilfordii HOM05D006316 ORTHO05D008032 4.4e-106 388.3 238 80.3
VMungo1215G0091 Vigna mungo HOM05D006316 ORTHO05D008032 4.4e-106 388.3 230 81.3
MSTRG.20325 Avicennia marina HOM05D006316 ORTHO05D008032 7.5e-106 387.5 242 76.9
ClCG05G006940 Citrullus lanatus HOM05D006316 ORTHO05D008032 7.5e-106 387.5 253 76.3
Sed0018318 Sechium edule HOM05D006316 ORTHO05D008032 1.3e-105 386.7 241 78.0
arahy.Tifrunner.gnm1.ann1.NEV66G Arachis hypogaea HOM05D006316 ORTHO05D008032 2.9e-105 385.6 241 77.2
arahy.Tifrunner.gnm1.ann1.ZN6V8N Arachis hypogaea HOM05D006316 ORTHO05D008032 2.9e-105 385.6 241 77.2
Migut.B00749 Erythranthe guttata HOM05D006316 ORTHO05D008032 2.9e-105 385.6 237 77.2
SalBow7G1663 Salvia bowleyana HOM05D006316 ORTHO05D008032 2.9e-105 385.6 237 77.2
Ciclev10005749m.g Citrus clementina HOM05D006316 ORTHO05D008032 3.7e-105 385.2 239 79.5
Phvul.003G124500 Phaseolus vulgaris HOM05D006316 ORTHO05D008032 3.7e-105 385.2 230 80.0
CAN.G255.2 Capsicum annuum HOM05D006316 ORTHO05D008032 6.4e-105 384.4 232 79.3
Eucgr.B02199 Eucalyptus grandis HOM05D006316 ORTHO05D008032 6.4e-105 384.4 241 76.8
Atru.chr4.3188 Acer truncatum HOM05D006316 ORTHO05D008032 1.1e-104 383.6 239 79.1
Actinidia24554 Actinidia chinensis HOM05D006316 ORTHO05D008032 3.2e-104 382.1 228 80.3
Lsat_1_v5_gn_6_117760 Lactuca sativa HOM05D006316 ORTHO05D008032 3.2e-104 382.1 236 78.0
Thhalv10021423m.g Eutrema salsugineum HOM05D006316 ORTHO05D008032 4.1e-104 381.7 241 75.9
Lj4g0011706 Lotus japonicus HOM05D006316 ORTHO05D008032 5.4e-104 381.3 241 76.8
CARHR092900 Cardamine hirsuta HOM05D006316 ORTHO05D008032 1.2e-103 380.2 241 76.3
Peaxi162Scf00571g00412 Petunia axillaris HOM05D006316 ORTHO05D008032 1.2e-103 380.2 232 78.0
Potri.010G004100 Populus trichocarpa HOM05D006316 ORTHO05D008032 1.2e-103 380.2 241 75.5
Hund12266 Selenicereus undatus HOM05D006316 ORTHO05D008032 1.6e-103 379.8 241 76.3
Ah.07g202850 Amaranthus hybridus HOM05D006316 ORTHO05D008032 2.7e-103 379.0 241 74.7
Medtr4g124260 Medicago truncatula HOM05D006316 ORTHO05D008032 2.7e-103 379.0 241 75.5
PSO210G4075 Papaver somniferum HOM05D006316 ORTHO05D008032 5.9e-103 377.9 229 80.3
Carub.0003s1730 Capsella rubella HOM05D006316 ORTHO05D008032 7.8e-103 377.5 241 75.5
CDE12G0513 Ceratophyllum demersum HOM05D006316 ORTHO05D008032 1.0e-102 377.1 240 75.8
AUR62002525 Chenopodium quinoa HOM05D006316 ORTHO05D008032 1.3e-102 376.7 241 76.3
Lalb_Chr12g0200491 Lupinus albus HOM05D006316 ORTHO05D008032 1.3e-102 376.7 247 75.3
Sp3g15720 Schrenkiella parvula HOM05D006316 ORTHO05D008032 1.3e-102 376.7 241 74.3
Duzib128G0584 Durio zibethinus HOM05D006316 ORTHO05D008032 1.7e-102 376.3 238 77.3
PSO761G0163 Papaver somniferum HOM05D006316 ORTHO05D008032 2.3e-102 375.9 229 79.5
AT3G17590 Arabidopsis thaliana HOM05D006316 ORTHO05D008032 3.0e-102 375.6 241 74.3
MD13G1137100 Malus domestica HOM05D006316 ORTHO05D008032 3.0e-102 375.6 241 75.1
AL3G30660 Arabidopsis lyrata HOM05D006316 ORTHO05D008032 5.0e-102 374.8 241 74.7
Aa31LG8G4460 Aethionema arabicum HOM05D006316 ORTHO05D008032 8.6e-102 374.0 241 74.3
Gohir.D05G000900 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.1e-101 373.6 241 74.3
Gorai.009G000800 Gossypium raimondii HOM05D006316 ORTHO05D008032 1.1e-101 373.6 241 74.3
Gohir.A05G000600 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.9e-101 372.9 241 74.3
CANSAT56G2492 Cannabis sativa HOM05D006316 ORTHO05D008032 2.5e-101 372.5 230 78.7
EL10Ac3g06220 Beta vulgaris HOM05D006316 ORTHO05D008032 5.6e-101 371.3 241 73.0
Nitab4.5_0000051g0260 Nicotiana tabacum HOM05D006316 ORTHO05D008032 7.3e-101 370.9 231 77.9
A05p32260 Brassica napus HOM05D006316 ORTHO05D008032 9.5e-101 370.5 234 74.4
vmacro04190 Vaccinium macrocarpon HOM05D006316 ORTHO05D008032 9.5e-101 370.5 264 72.0
BcaB06g25834 Brassica carinata HOM05D006316 ORTHO05D008032 1.2e-100 370.2 241 72.6
ATR0796G033 Amborella trichopoda HOM05D006316 ORTHO05D008032 2.8e-100 369.0 242 74.0
BraA05t22055Z Brassica rapa HOM05D006316 ORTHO05D008032 2.8e-100 369.0 234 73.9
Sopen11g008410 Solanum pennellii HOM05D006316 ORTHO05D008032 6.2e-100 367.9 242 76.9
HanXRQChr05g0148931 Helianthus annuus HOM05D006316 ORTHO05D008032 1.0e-99 367.1 236 75.0
Nitab4.5_0004737g0050 Nicotiana tabacum HOM05D006316 ORTHO05D008032 1.8e-99 366.3 231 76.6
SGA_v2.0_scaffold131G34373 Striga asiatica HOM05D006316 ORTHO05D008032 2.3e-99 365.9 263 68.4
BcaC05g28772 Brassica carinata HOM05D006316 ORTHO05D008032 4.0e-99 365.2 232 73.7
C05p48790 Brassica napus HOM05D006316 ORTHO05D008032 5.2e-99 364.8 241 71.4
BolC5t33616H Brassica oleracea HOM05D006316 ORTHO05D008032 5.2e-99 364.8 241 71.4
COL.COLO4_13438 Corchorus olitorius HOM05D006316 ORTHO05D008032 5.2e-99 364.8 238 75.6
TPR.G12708 Trifolium pratense HOM05D006316 ORTHO05D008032 1.5e-98 363.2 223 77.1
unitig_578.g15959 Utricularia gibba HOM05D006316 ORTHO05D008032 7.5e-98 360.9 247 71.3
ECA246G2315 Erigeron canadensis HOM05D006316 ORTHO05D008032 1.3e-97 360.1 224 76.8
Gohir.A09G135800 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.1e-96 357.1 238 71.8
Sabra10G0003500 Salix brachista HOM05D006316 ORTHO05D008032 9.2e-96 354.0 282 64.2
CSS0010190 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 2.3e-94 349.4 232 75.9
Cfa015754 Carpinus fangiana HOM05D006316 ORTHO05D008032 3.9e-94 348.6 209 82.8
Gohir.D09G137500 Gossypium hirsutum HOM05D006316 ORTHO05D008032 8.6e-94 347.4 261 66.3
FvH4_4g21770 Fragaria vesca HOM05D006316 ORTHO05D008032 9.5e-93 344.0 228 71.9
Psat4g020720 Pisum sativum HOM05D006316 ORTHO05D008032 9.5e-93 344.0 230 73.5
RcHm_v2.0_Chr4g0428001 Rosa chinensis HOM05D006316 ORTHO05D008032 1.2e-92 343.6 228 71.5
FAN17G2953 Fragaria x ananassa HOM05D006316 ORTHO05D008032 2.8e-92 342.4 228 71.5
Sopen11g008420 Solanum pennellii HOM05D006316 ORTHO05D008032 2.8e-92 342.4 243 70.4
THA.LOC104826519 Tarenaya hassleriana HOM05D006316 ORTHO05D008032 3.4e-90 335.5 210 78.6
Thecc.03G258800 Theobroma cacao HOM05D006316 ORTHO05D008032 1.3e-89 333.6 241 69.3
FAN12G0215 Fragaria x ananassa HOM05D006316 ORTHO05D008032 6.4e-89 331.3 250 65.6
FAN07G2419 Fragaria x ananassa HOM05D006316 ORTHO05D008032 2.1e-87 326.2 259 62.9
Os02g0723700 Oryza sativa ssp. japonica HOM05D006316 ORTHO05D008032 6.0e-87 324.7 226 67.7
Zm00001eb354530 Zea mays HOM05D006316 ORTHO05D008032 3.9e-86 322.0 239 64.9
TAR362G1307 Trochodendron aralioides HOM05D006316 ORTHO05D008032 2.5e-85 319.3 191 83.2
Prupe.1G208100 Prunus persica HOM05D006316 ORTHO05D008032 3.4e-82 308.9 196 77.6
Gorai.006G157900 Gossypium raimondii HOM05D006316 ORTHO05D008032 8.4e-81 304.3 256 61.7
Rhsim13G0235700 Rhododendron simsii HOM05D006316 ORTHO05D008032 9.2e-80 300.8 278 59.7
Dinv32178 Davidia involucrata HOM05D006316 ORTHO05D008032 1.6e-79 300.1 243 65.8
Solyc11g013400.3 Solanum lycopersicum HOM05D006316 ORTHO05D008032 3.5e-79 298.9 196 76.0
SHI09041 Sapria himalayana HOM05D006316 ORTHO05D008032 2.0e-74 283.1 211 66.4
AUR62023666 Chenopodium quinoa HOM05D006316 ORTHO05D008032 9.9e-74 280.8 306 51.6
Mapoly0059s0054 Marchantia polymorpha HOM05D006316 ORTHO05D008032 4.6e-71 271.9 238 55.0
Rhsim04G0168500 Rhododendron simsii HOM05D006316 ORTHO05D008032 2.3e-70 269.6 196 70.4
Sc19g0002500 Simmondsia chinensis HOM05D006316 ORTHO05D008032 3.3e-69 265.8 166 77.1
SMO358G0571 Selaginella moellendorffii HOM05D006316 ORTHO05D008032 7.6e-66 254.6 228 57.0
HPP92_002633 Vanilla planifolia HOM05D006316 ORTHO05D008032 1.1e-64 250.8 160 73.8
AagrBONN_evm.TU.Sc2ySwM_228.3212 Anthoceros agrestis HOM05D006316 ORTHO05D008032 4.6e-63 245.4 225 53.8
Lj2g0021665 Lotus japonicus HOM05D006316 ORTHO05D008032 2.1e-60 236.5 231 55.4
Rhsim04G0168300 Rhododendron simsii HOM05D006316 ORTHO05D008032 2.0e-58 229.9 196 62.8
CBR_g38190 Chara braunii HOM05D006316 ORTHO05D008032 5.8e-58 228.4 231 49.4
LjContig00575g0004232 Lotus japonicus HOM05D006316 ORTHO05D008032 8.4e-57 224.6 184 61.4
LjContig00576g0014419 Lotus japonicus HOM05D006316 ORTHO05D008032 8.4e-57 224.6 184 61.4
Lj2g0021371 Lotus japonicus HOM05D006316 ORTHO05D008032 1.9e-56 223.4 151 70.9
Ca_21361_v3 Cicer arietinum L. HOM05D006316 ORTHO05D008032 5.1e-46 188.7 123 74.8
SEGI_01321 Sequoiadendron giganteum HOM05D006316 ORTHO05D008032 1.8e-43 180.3 128 69.5
Glyma.09G159500 Glycine max HOM05D006316 ORTHO05D008032 2.2e-36 156.8 162 52.5
PGSC0003DMG400027786 Solanum tuberosum HOM05D006316 ORTHO05D008032 4.8e-36 155.6 122 64.8
CSS0015998 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 2.9e-33 146.4 93 77.4
Glyma.17G042702 Glycine max HOM05D006316 ORTHO05D008032 3.1e-27 126.3 92 67.4
MBI18_g03841_MAGBIO Magnolia biondii HOM05D006046 ORTHO05D007580 3.4e-26 122.9 71 78.9
Cpa.g.sc146.8 Carica papaya HOM05D006316 ORTHO05D008032 5.9e-26 122.1 63 90.5
Solyc11g013410.2 Solanum lycopersicum HOM05D006316 ORTHO05D008032 2.2e-25 120.2 91 65.9
DCAR_030416 Daucus carota HOM05D006316 ORTHO05D008032 8.2e-20 101.7 99 59.6
Cpa.g.c44700 Carica papaya HOM05D006316 ORTHO05D008032 1.4e-19 100.9 55 80.0
Oeu020629.4 Olea europaea HOM05D002546 ORTHO05D002671 3.2e-16 89.7 65 69.2
Cfa025220 Carpinus fangiana HOM05D006316 ORTHO05D008032 3.0e-14 83.2 152 33.6
RcHm_v2.0_Chr5g0025761 Rosa chinensis HOM05D006316 ORTHO05D008032 3.5e-10 69.7 72 52.8


User provided reference genes

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