Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23873 Nelumbo nucifera HOM05D001541 ORTHO05D001465 1.7e-27 125.2 59 100.0
MD13G1040300 Malus domestica HOM05D001541 ORTHO05D001465 9.7e-15 82.8 48 77.1
TAR371G0937 Trochodendron aralioides HOM05D001541 ORTHO05D001465 3.7e-14 80.9 45 77.8
Hma1.2p1_0061F.1_g033740 Hydrangea macrophylla HOM05D001541 ORTHO05D001465 6.3e-14 80.1 45 75.6
Prupe.1G312700 Prunus persica HOM05D001541 ORTHO05D001465 6.3e-14 80.1 48 79.2
Lj6A756T65 Lonicera japonica HOM05D001541 ORTHO05D001465 1.8e-13 78.6 46 78.3
Sabra10G0093500 Salix brachista HOM05D001541 ORTHO05D001465 1.8e-13 78.6 48 72.9
RcHm_v2.0_Chr4g0434991 Rosa chinensis HOM05D001541 ORTHO05D001465 3.1e-13 77.8 44 77.3
FvH4_4g27190 Fragaria vesca HOM05D001541 ORTHO05D001465 5.3e-13 77.0 48 70.8
FAN07G0327 Fragaria x ananassa HOM05D001541 ORTHO05D001465 5.3e-13 77.0 48 70.8
FAN12G1284 Fragaria x ananassa HOM05D001541 ORTHO05D001465 5.3e-13 77.0 48 70.8
FAN12G1921 Fragaria x ananassa HOM05D001541 ORTHO05D001465 5.3e-13 77.0 48 70.8
FAN17G0640 Fragaria x ananassa HOM05D001541 ORTHO05D001465 5.3e-13 77.0 48 70.8
FAN22G0277 Fragaria x ananassa HOM05D001541 ORTHO05D001465 5.3e-13 77.0 48 70.8
MBI16_g32665_MAGBIO Magnolia biondii HOM05D001541 ORTHO05D001465 9.1e-13 76.3 45 73.3
Potri.010G123500 Populus trichocarpa HOM05D001541 ORTHO05D001465 9.1e-13 76.3 48 70.8
Atru.chr11.117 Acer truncatum HOM05D001541 ORTHO05D001465 1.2e-12 75.9 49 69.4
Thecc.02G226800 Theobroma cacao HOM05D001541 ORTHO05D001465 2.0e-12 75.1 48 68.8
Dinv31628 Davidia involucrata HOM05D001541 ORTHO05D001465 3.4e-12 74.3 41 75.6
MD16G1041300 Malus domestica HOM05D001541 ORTHO05D001465 3.4e-12 74.3 67 56.7
TWI31G0232 Tripterygium wilfordii HOM05D001541 ORTHO05D001465 3.4e-12 74.3 46 69.6
Aqoxy3G00270 Aquilegia oxysepala HOM05D001541 ORTHO05D001465 4.5e-12 73.9 50 66.0
DCAR_023652 Daucus carota HOM05D001541 ORTHO05D001465 1.7e-11 72.0 46 73.9
Manes.06G066800 Manihot esculenta HOM05D001541 ORTHO05D001465 2.9e-11 71.2 49 63.3
Lalb_Chr14g0370321 Lupinus albus HOM05D001541 ORTHO05D001465 3.8e-11 70.9 44 70.5
Rhsim09G0106800 Rhododendron simsii HOM05D001541 ORTHO05D001465 3.8e-11 70.9 41 75.6
Hund25058 Selenicereus undatus HOM05D001541 ORTHO05D001465 3.8e-11 70.9 41 70.7
A07p34700 Brassica napus HOM05D001541 ORTHO05D001465 5.0e-11 70.5 50 60.0
Ciclev10016145m.g Citrus clementina HOM05D001541 ORTHO05D001465 5.0e-11 70.5 50 64.0
SalBow8G3486 Salvia bowleyana HOM05D001541 ORTHO05D001465 5.0e-11 70.5 46 65.2
BcaB03g15104 Brassica carinata HOM05D001541 ORTHO05D001465 8.5e-11 69.7 50 60.0
BcaC08g46260 Brassica carinata HOM05D001541 ORTHO05D001465 8.5e-11 69.7 50 60.0
C06p41710 Brassica napus HOM05D001541 ORTHO05D001465 8.5e-11 69.7 50 60.0
BolC6t39255H Brassica oleracea HOM05D001541 ORTHO05D001465 8.5e-11 69.7 50 60.0
BcaB03g15101 Brassica carinata HOM05D001541 ORTHO05D001465 1.1e-10 69.3 50 60.0
Duzib268G1768 Durio zibethinus HOM05D001541 ORTHO05D001465 1.1e-10 69.3 47 63.8
Glyma.07G050300 Glycine max HOM05D001541 ORTHO05D001465 1.1e-10 69.3 46 69.6
Nitab4.5_0000092g0250 Nicotiana tabacum HOM05D001541 ORTHO05D001465 1.1e-10 69.3 50 58.0
Nitab4.5_0003715g0100 Nicotiana tabacum HOM05D001541 ORTHO05D001465 1.1e-10 69.3 50 58.0
VMungo0720G2863 Vigna mungo HOM05D001541 ORTHO05D001465 1.1e-10 69.3 50 64.0
Duzib248G0784 Durio zibethinus HOM05D001541 ORTHO05D001465 1.4e-10 68.9 48 64.6
Thhalv10018954m.g Eutrema salsugineum HOM05D001541 ORTHO05D001465 1.4e-10 68.9 50 60.0
MSTRG.7661 Avicennia marina HOM05D001541 ORTHO05D001465 1.9e-10 68.6 42 73.8
PSO017G2887 Papaver somniferum HOM05D001541 ORTHO05D001465 1.9e-10 68.6 45 66.7
Psat2g081400 Pisum sativum HOM05D001541 ORTHO05D001465 1.9e-10 68.6 50 62.0
PGSC0003DMG400014560 Solanum tuberosum HOM05D001541 ORTHO05D001465 1.9e-10 68.6 45 64.4
BraA07t31089Z Brassica rapa HOM05D001541 ORTHO05D001465 2.5e-10 68.2 50 58.0
Cc11_g10000 Coffea canephora HOM05D001541 ORTHO05D001465 2.5e-10 68.2 43 72.1
Sed0020573 Sechium edule HOM05D001541 ORTHO05D001465 2.5e-10 68.2 45 66.7
Sopen05g005250 Solanum pennellii HOM05D001541 ORTHO05D001465 2.5e-10 68.2 45 64.4
Gohir.D01G167000 Gossypium hirsutum HOM05D001541 ORTHO05D001465 3.2e-10 67.8 48 60.4
Gorai.002G207500 Gossypium raimondii HOM05D001541 ORTHO05D001465 3.2e-10 67.8 48 60.4
Migut.E00354 Erythranthe guttata HOM05D001541 ORTHO05D001465 4.2e-10 67.4 46 60.9
Gohir.A01G176200 Gossypium hirsutum HOM05D001541 ORTHO05D001465 4.2e-10 67.4 48 60.4
vmacro10565 Vaccinium macrocarpon HOM05D001541 ORTHO05D001465 4.2e-10 67.4 41 73.2
ClCG05G022620 Citrullus lanatus HOM05D001541 ORTHO05D001465 7.2e-10 66.6 45 62.2
CsaV3_5G034420 Cucumis sativus L. HOM05D001541 ORTHO05D001465 7.2e-10 66.6 45 62.2
Solyc05g009430.3 Solanum lycopersicum HOM05D001541 ORTHO05D001465 7.2e-10 66.6 45 62.2
Psat6g226840 Pisum sativum HOM05D001541 ORTHO05D001465 1.2e-09 65.9 50 60.0
TPR.G18818 Trifolium pratense HOM05D001541 ORTHO05D001465 1.2e-09 65.9 50 56.0
Migut.L01055 Erythranthe guttata HOM05D001541 ORTHO05D001465 1.6e-09 65.5 42 64.3
Lsat_1_v5_gn_4_15881 Lactuca sativa HOM05D001541 ORTHO05D001465 1.6e-09 65.5 42 66.7
Psat6g226800 Pisum sativum HOM05D001541 ORTHO05D001465 1.6e-09 65.5 50 60.0
VMungo1215G1722 Vigna mungo HOM05D001541 ORTHO05D001465 1.6e-09 65.5 45 64.4
CAN.G610.73 Capsicum annuum HOM05D001541 ORTHO05D001465 2.1e-09 65.1 46 58.7
CiPaw.16G065700 Carya illinoinensis HOM05D001541 ORTHO05D001465 2.1e-09 65.1 48 62.5
Glyma.20G116800 Glycine max HOM05D001541 ORTHO05D001465 2.1e-09 65.1 42 64.3
SalBow8G5397 Salvia bowleyana HOM05D001541 ORTHO05D001465 2.1e-09 65.1 48 60.4
GSVIVG01011882001 Vitis vinifera HOM05D001541 ORTHO05D001465 2.1e-09 65.1 42 66.7
arahy.Tifrunner.gnm1.ann1.GJ31ZB Arachis hypogaea HOM05D001541 ORTHO05D001465 2.7e-09 64.7 48 58.3
Glyma.01G083300 Glycine max HOM05D001541 ORTHO05D001465 3.6e-09 64.3 49 63.3
Medtr1g110510 Medicago truncatula HOM05D001541 ORTHO05D001465 3.6e-09 64.3 50 56.0
Phvul.007G028400 Phaseolus vulgaris HOM05D001541 ORTHO05D001465 3.6e-09 64.3 50 60.0
SGA_v2.0_scaffold170G38775 Striga asiatica HOM05D001541 ORTHO05D001465 3.6e-09 64.3 52 50.0
AL2G27120 Arabidopsis lyrata HOM05D001541 ORTHO05D001465 4.7e-09 63.9 47 57.4
arahy.Tifrunner.gnm1.ann1.M5M2WQ Arachis hypogaea HOM05D001541 ORTHO05D001465 4.7e-09 63.9 48 58.3
Ca_11161_v3 Cicer arietinum L. HOM05D001541 ORTHO05D001465 4.7e-09 63.9 50 58.0
Sp5g23340 Schrenkiella parvula HOM05D001541 ORTHO05D001465 4.7e-09 63.9 45 60.0
AT1G68290 Arabidopsis thaliana HOM05D001541 ORTHO05D001465 6.1e-09 63.5 47 57.4
CSS0024504 Camellia sinensis var. sinensis HOM05D001541 ORTHO05D001465 6.1e-09 63.5 44 63.6
HPP92_004817 Vanilla planifolia HOM05D001541 ORTHO05D001465 6.1e-09 63.5 48 62.5
Haze_17497 Corylus avellana HOM05D001541 ORTHO05D001465 7.9e-09 63.2 48 58.3
Migut.E00353 Erythranthe guttata HOM05D001541 ORTHO05D001465 7.9e-09 63.2 42 66.7
Carub.0002s1477 Capsella rubella HOM05D001541 ORTHO05D001465 1.0e-08 62.8 47 57.4
Aa31LG11G11570 Aethionema arabicum HOM05D000011 ORTHO05D000018 1.4e-08 62.4 47 55.3
Ca_02935_v3 Cicer arietinum L. HOM05D001541 ORTHO05D001465 1.4e-08 62.4 49 61.2
Zm00001eb125480 Zea mays HOM05D001541 ORTHO05D001465 1.4e-08 62.4 42 69.0
TPR.G38351 Trifolium pratense HOM05D001541 ORTHO05D001465 1.8e-08 62.0 49 59.2
Cfa018584 Carpinus fangiana HOM05D001541 ORTHO05D001465 2.3e-08 61.6 48 58.3
Lj2g0016964 Lotus japonicus HOM05D001541 ORTHO05D001465 2.3e-08 61.6 47 61.7
VMungo1215G2203 Vigna mungo HOM05D001541 ORTHO05D001465 2.3e-08 61.6 44 63.6
CARHR060970 Cardamine hirsuta HOM05D001541 ORTHO05D001465 3.9e-08 60.8 47 57.4
Medtr5g056140 Medicago truncatula HOM05D001541 ORTHO05D001465 5.1e-08 60.5 49 57.1
SEGI_37438 Sequoiadendron giganteum HOM05D001541 ORTHO05D001465 5.1e-08 60.5 47 57.4
HPP92_004814 Vanilla planifolia HOM05D001541 ORTHO05D001465 5.1e-08 60.5 42 66.7
ATR1125G039 Amborella trichopoda HOM05D001541 ORTHO05D001465 6.7e-08 60.1 49 51.0
Phvul.003G030500 Phaseolus vulgaris HOM05D001541 ORTHO05D001465 6.7e-08 60.1 45 62.2
Medtr5g056160 Medicago truncatula HOM05D001541 ORTHO05D001465 1.1e-07 59.3 49 57.1
Migut.E00352 Erythranthe guttata HOM05D001541 ORTHO05D001465 1.5e-07 58.9 42 57.1
HanXRQChr17g0567581 Helianthus annuus HOM05D001541 ORTHO05D001465 1.5e-07 58.9 43 55.8
QL01p041091 Quercus lobata HOM05D001541 ORTHO05D001465 1.5e-07 58.9 48 56.2
vmacro10564 Vaccinium macrocarpon HOM05D001541 ORTHO05D001465 1.5e-07 58.9 41 61.0
Actinidia14901 Actinidia chinensis HOM05D001541 ORTHO05D001465 2.0e-07 58.5 43 60.5
PGR102G2605 Punica granatum HOM05D001541 ORTHO05D001465 2.0e-07 58.5 36 63.9
SEGI_20154 Sequoiadendron giganteum HOM05D001541 ORTHO05D001465 2.0e-07 58.5 45 55.6
CANSAT56G0127 Cannabis sativa HOM05D001541 ORTHO05D001465 2.6e-07 58.2 49 46.9
CDE05G0721 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 2.6e-07 58.2 45 51.1
vmacro22277 Vaccinium macrocarpon HOM05D001541 ORTHO05D001465 2.6e-07 58.2 46 56.5
arahy.Tifrunner.gnm1.ann1.M7E1WE Arachis hypogaea HOM05D001541 ORTHO05D001465 3.3e-07 57.8 44 61.4
arahy.Tifrunner.gnm1.ann1.W7AU0P Arachis hypogaea HOM05D001541 ORTHO05D001465 3.3e-07 57.8 44 61.4
DCAR_028125 Daucus carota HOM05D001541 ORTHO05D001465 4.4e-07 57.4 44 54.5
Gohir.A10G019700 Gossypium hirsutum HOM05D001541 ORTHO05D001465 4.4e-07 57.4 46 54.3
Gohir.D10G020500 Gossypium hirsutum HOM05D001541 ORTHO05D001465 4.4e-07 57.4 46 54.3
Gorai.011G021600 Gossypium raimondii HOM05D001541 ORTHO05D001465 4.4e-07 57.4 46 54.3
Rhsim13G0174700 Rhododendron simsii HOM05D001541 ORTHO05D001465 4.4e-07 57.4 46 56.5
VMungo0251G3214 Vigna mungo HOM05D001541 ORTHO05D001465 4.4e-07 57.4 44 54.5
CSS0005173 Camellia sinensis var. sinensis HOM05D001541 ORTHO05D001465 5.7e-07 57.0 46 52.2
Rhsim05G0153700 Rhododendron simsii HOM05D003624 ORTHO05D004188 5.7e-07 57.0 48 52.1
Rhsim05G0153900 Rhododendron simsii HOM05D001541 ORTHO05D001465 5.7e-07 57.0 48 52.1
Thecc.06G196500 Theobroma cacao HOM05D001541 ORTHO05D001465 5.7e-07 57.0 46 54.3
Ca_18494_v3 Cicer arietinum L. HOM05D001541 ORTHO05D001465 7.4e-07 56.6 44 56.8
Glyma.08G058100 Glycine max HOM05D001541 ORTHO05D001465 7.4e-07 56.6 46 54.3
Gohir.A10G019500 Gossypium hirsutum HOM05D001541 ORTHO05D001465 7.4e-07 56.6 46 54.3
Gohir.D10G020300 Gossypium hirsutum HOM05D001541 ORTHO05D001465 7.4e-07 56.6 46 54.3
Gorai.011G021500 Gossypium raimondii HOM05D001541 ORTHO05D001465 7.4e-07 56.6 46 54.3
Phvul.003G030200 Phaseolus vulgaris HOM05D001541 ORTHO05D001465 7.4e-07 56.6 45 55.6
THA.LOC104815463 Tarenaya hassleriana HOM05D001541 ORTHO05D001465 7.4e-07 56.6 47 53.2
Cc02_g12610 Coffea canephora HOM05D001541 ORTHO05D001465 9.7e-07 56.2 49 51.0
SalBow8G0641 Salvia bowleyana HOM05D003116 ORTHO05D003619 9.7e-07 56.2 46 56.5
Medtr4g090610 Medicago truncatula HOM05D001541 ORTHO05D001465 1.3e-06 55.8 49 51.0
SEGI_08918 Sequoiadendron giganteum HOM05D001541 ORTHO05D001465 1.3e-06 55.8 50 48.0
CANSAT56G4440 Cannabis sativa HOM05D001541 ORTHO05D001465 1.7e-06 55.5 50 52.0
Os01g0128100 Oryza sativa ssp. japonica HOM05D001541 ORTHO05D001465 1.7e-06 55.5 42 59.5
PSO675G1538 Papaver somniferum HOM05D001541 ORTHO05D001465 2.2e-06 55.1 48 45.8
PSO541G4032 Papaver somniferum HOM05D001541 ORTHO05D001465 2.8e-06 54.7 45 48.9
Psat4g144240 Pisum sativum HOM05D001541 ORTHO05D001465 2.8e-06 54.7 48 52.1
Psat5g284800 Pisum sativum HOM05D001541 ORTHO05D001465 2.8e-06 54.7 48 52.1
Psat6g224480 Pisum sativum HOM05D001541 ORTHO05D001465 2.8e-06 54.7 48 52.1
Psat7g109960 Pisum sativum HOM05D001541 ORTHO05D001465 2.8e-06 54.7 48 52.1
COL.COLO4_31556 Corchorus olitorius HOM05D001541 ORTHO05D001465 3.7e-06 54.3 46 52.2
Lj4g0027631 Lotus japonicus HOM05D001541 ORTHO05D001465 3.7e-06 54.3 44 54.5
Lalb_Chr10g0100071 Lupinus albus HOM05D001541 ORTHO05D001465 3.7e-06 54.3 45 53.3
Nn1g06715 Nelumbo nucifera HOM05D001541 ORTHO05D001465 3.7e-06 54.3 49 49.0
TPR.G32412 Trifolium pratense HOM05D001541 ORTHO05D001465 4.8e-06 53.9 48 50.0
CANSAT01G0480 Cannabis sativa HOM05D001541 ORTHO05D001465 6.3e-06 53.5 39 59.0
CANSAT56G1856 Cannabis sativa HOM05D001541 ORTHO05D001465 6.3e-06 53.5 50 48.0
Nn1g06716 Nelumbo nucifera HOM05D001541 ORTHO05D001465 6.3e-06 53.5 42 54.8
Peaxi162Scf00527g00026 Petunia axillaris HOM05D001541 ORTHO05D001465 6.3e-06 53.5 44 50.0
ECA234G1485 Erigeron canadensis HOM05D001541 ORTHO05D001465 8.2e-06 53.1 31 71.0
MD05G1323600 Malus domestica HOM05D001541 ORTHO05D001465 8.2e-06 53.1 48 45.8


User provided reference genes

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