Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 7.6e-167 590.5 314 100.0
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 2.0e-127 459.5 316 78.8
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 2.5e-109 399.4 305 75.1
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 2.0e-90 336.7 297 68.0
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 9.8e-90 334.3 309 63.8
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 3.2e-88 329.3 293 70.0
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 4.6e-87 325.5 311 64.6
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 7.8e-87 324.7 321 62.0
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 2.3e-86 323.2 300 68.0
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 3.0e-86 322.8 289 68.2
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 1.2e-84 317.4 252 71.8
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 1.2e-84 317.4 314 65.3
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 2.8e-84 316.2 247 70.0
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 4.7e-84 315.5 328 59.8
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 4.0e-83 312.4 320 60.6
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 1.5e-82 310.5 248 71.0
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 1.5e-82 310.5 240 72.5
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 2.2e-81 306.6 314 62.7
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 4.9e-81 305.4 363 54.8
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 8.3e-81 304.7 311 62.1
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.1e-80 304.3 248 69.0
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 4.1e-80 302.4 248 68.5
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 2.1e-79 300.1 309 65.0
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 2.7e-79 299.7 303 59.1
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 2.7e-79 299.7 298 60.4
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.3e-78 296.6 312 64.7
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 2.3e-78 296.6 301 60.1
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 3.9e-78 295.8 244 66.8
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 8.6e-78 294.7 332 63.0
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 1.1e-77 294.3 304 58.9
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 1.1e-77 294.3 304 58.9
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 4.3e-77 292.4 305 61.0
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 5.6e-77 292.0 283 61.1
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 4.7e-76 288.9 318 56.3
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 6.2e-76 288.5 295 60.3
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 1.4e-75 287.3 237 67.1
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 1.4e-75 287.3 307 57.3
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 1.8e-75 287.0 272 62.9
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 5.2e-75 285.4 259 66.0
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 6.8e-75 285.0 284 61.6
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 1.2e-74 284.3 311 63.3
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 3.4e-74 282.7 246 65.4
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 4.4e-74 282.3 301 57.5
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 4.4e-74 282.3 311 55.9
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 4.4e-74 282.3 275 63.3
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 5.8e-74 282.0 310 55.5
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 1.7e-73 280.4 290 56.2
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 1.7e-73 280.4 287 60.3
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 3.7e-73 279.3 225 68.0
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 4.9e-73 278.9 309 63.4
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 6.4e-73 278.5 298 57.0
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 8.4e-73 278.1 311 63.0
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 8.4e-73 278.1 311 63.0
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 4.1e-72 275.8 309 63.1
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 7.1e-72 275.0 310 54.5
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 7.1e-72 275.0 301 59.5
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 7.1e-72 275.0 223 70.9
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 1.2e-71 274.2 301 56.5
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 2.1e-71 273.5 297 58.2
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 3.5e-71 272.7 298 55.4
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 7.8e-71 271.6 298 55.4
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 3.9e-70 269.2 286 56.6
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 8.6e-70 268.1 309 53.4
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 2.5e-69 266.5 297 56.6
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 7.3e-69 265.0 320 53.4
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 2.8e-68 263.1 292 55.1
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 4.7e-68 262.3 312 54.2
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 6.2e-68 261.9 290 55.2
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 1.1e-67 261.2 313 53.4
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 1.4e-67 260.8 306 60.1
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 1.8e-67 260.4 311 56.3
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 2.4e-67 260.0 266 58.6
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 6.8e-67 258.5 312 54.2
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 2.0e-66 256.9 295 54.9
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 2.6e-66 256.5 230 62.2
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 5.8e-66 255.4 257 59.5
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 1.3e-65 254.2 320 51.6
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 2.9e-65 253.1 310 53.2
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.4e-64 250.8 300 51.0
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 2.4e-64 250.0 285 56.1
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 2.4e-64 250.0 301 53.2
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 4.2e-64 249.2 305 50.8
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 9.3e-64 248.1 291 58.4
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.2e-63 247.7 297 53.2
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 1.2e-63 247.7 314 52.5
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 3.5e-63 246.1 309 51.5
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 6.0e-63 245.4 323 49.5
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 7.8e-63 245.0 327 54.4
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 6.6e-62 241.9 308 51.3
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 1.5e-61 240.7 241 60.2
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.9e-61 240.4 296 53.4
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 2.5e-61 240.0 286 55.9
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 4.3e-61 239.2 297 52.2
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 6.9e-59 231.9 304 50.0
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 1.2e-58 231.1 309 50.2
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 1.5e-58 230.7 304 51.0
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 2.0e-58 230.3 292 52.4
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 3.4e-58 229.6 266 57.5
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 9.9e-58 228.0 277 51.3
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 2.9e-57 226.5 315 49.2
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 3.8e-57 226.1 243 62.1
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 7.1e-56 221.9 169 71.6
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 7.1e-56 221.9 246 57.7
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 2.1e-55 220.3 242 57.4
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 3.0e-54 216.5 301 48.5
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 3.0e-54 216.5 253 52.6
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 5.1e-54 215.7 304 48.0
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 6.6e-54 215.3 226 58.4
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 1.9e-53 213.8 241 57.3
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 2.5e-53 213.4 241 57.3
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 4.3e-53 212.6 241 57.3
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 4.3e-53 212.6 241 57.3
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 4.3e-53 212.6 266 54.9
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 7.4e-53 211.8 242 52.5
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 9.6e-53 211.5 241 56.8
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 1.3e-52 211.1 251 55.0
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 1.3e-52 211.1 323 51.1
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 1.6e-52 210.7 245 55.5
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 2.8e-52 209.9 256 54.7
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 4.8e-52 209.1 323 50.8
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 8.1e-52 208.4 330 50.0
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 1.1e-51 208.0 244 56.6
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 1.8e-51 207.2 269 50.9
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 2.4e-51 206.8 240 54.6
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 9.0e-51 204.9 330 49.4
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 2.9e-49 199.9 246 50.8
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 6.4e-49 198.7 262 55.0
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 6.4e-49 198.7 241 56.0
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.4e-48 197.6 254 53.5
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 2.4e-48 196.8 258 53.9
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 6.0e-47 192.2 307 44.6
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 5.1e-46 189.1 241 52.7
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 5.1e-46 189.1 241 52.7
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 8.7e-46 188.3 233 51.1
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 1.5e-45 187.6 251 52.2
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 2.5e-45 186.8 222 55.9
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 3.3e-45 186.4 281 47.7
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 5.6e-45 185.7 237 50.6
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 6.2e-44 182.2 223 55.6
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 1.1e-43 181.4 232 54.3
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 6.9e-43 178.7 186 57.5
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 1.2e-42 177.9 257 49.4
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 2.5e-40 170.2 272 44.5
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 4.2e-40 169.5 284 45.8
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 4.6e-39 166.0 207 51.2
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 7.9e-39 165.2 162 57.4
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 2.0e-34 150.6 115 67.0
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 1.3e-33 147.9 249 42.6
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 1.7e-33 147.5 249 42.6
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 3.2e-32 143.3 192 47.9
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 3.2e-32 143.3 224 44.6
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 4.2e-32 142.9 224 44.6
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 5.5e-32 142.5 114 71.1
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 1.6e-31 141.0 193 45.6
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 1.6e-31 141.0 249 41.0
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 3.6e-31 139.8 249 41.4
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 1.9e-24 117.5 200 45.0
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 6.1e-23 112.5 175 45.1
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 1.5e-21 107.8 176 41.5
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 5.7e-21 105.9 217 37.3
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 5.0e-17 92.8 62 82.3
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 1.8e-14 84.3 61 68.9
Sed0005383 Sechium edule HOM05D004418 ORTHO05D005222 5.5e-08 62.8 199 37.2


User provided reference genes

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