Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 5.6e-164 580.9 292 100.0
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 4.1e-106 388.7 286 71.0
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 4.1e-106 388.7 257 76.7
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 1.7e-104 383.3 285 72.3
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 3.8e-104 382.1 284 70.1
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 5.0e-104 381.7 287 69.0
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 8.5e-104 380.9 286 69.9
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 4.2e-103 378.6 284 69.4
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 4.2e-103 378.6 284 69.4
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 2.1e-102 376.3 284 68.3
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 3.6e-102 375.6 287 68.3
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 3.6e-102 375.6 287 69.7
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 2.3e-101 372.9 284 70.1
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 4.0e-101 372.1 287 66.9
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 6.7e-101 371.3 284 67.6
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 1.5e-100 370.2 285 67.7
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 2.6e-100 369.4 284 66.5
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 3.3e-100 369.0 286 68.5
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 7.5e-100 367.9 284 65.8
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 9.7e-100 367.5 287 65.9
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 4.8e-99 365.2 286 67.8
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 1.1e-98 364.0 288 66.7
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.8e-98 363.2 288 66.3
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 3.1e-98 362.5 288 66.0
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 3.1e-98 362.5 288 66.3
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 4.1e-98 362.1 284 66.5
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 5.3e-98 361.7 284 66.5
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 5.3e-98 361.7 285 66.3
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 2.0e-97 359.8 287 65.2
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 2.7e-97 359.4 286 65.4
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 4.5e-97 358.6 286 65.0
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 4.5e-97 358.6 246 73.6
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 5.9e-97 358.2 289 66.4
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 1.3e-96 357.1 288 66.3
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 1.3e-96 357.1 284 65.5
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.7e-96 356.7 302 63.9
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 1.7e-96 356.7 246 72.8
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 2.2e-96 356.3 284 64.8
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 2.9e-96 355.9 285 64.2
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 6.5e-96 354.8 290 64.8
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 6.5e-96 354.8 285 64.2
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 1.1e-95 354.0 287 65.2
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 1.1e-95 354.0 287 64.1
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.1e-95 354.0 287 63.8
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 1.9e-95 353.2 289 65.7
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 1.9e-95 353.2 241 74.3
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 7.2e-95 351.3 308 61.7
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 7.2e-95 351.3 285 65.6
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.2e-94 350.5 289 63.3
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 1.6e-94 350.1 287 63.8
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 1.6e-94 350.1 284 63.0
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 3.6e-94 349.0 243 73.7
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 3.6e-94 349.0 284 63.7
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 4.7e-94 348.6 286 63.6
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 8.0e-94 347.8 291 64.3
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 1.4e-93 347.1 291 63.9
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 1.8e-93 346.7 288 64.9
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 2.3e-93 346.3 287 65.2
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.3e-93 346.3 246 72.0
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 5.2e-93 345.1 285 63.9
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 5.2e-93 345.1 302 61.6
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 6.8e-93 344.7 248 73.0
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 6.8e-93 344.7 285 62.5
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 8.8e-93 344.4 291 62.2
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 1.5e-92 343.6 285 62.5
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 2.6e-92 342.8 285 64.2
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 7.5e-92 341.3 284 64.1
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 9.8e-92 340.9 220 75.9
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 1.3e-91 340.5 319 58.6
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 1.3e-91 340.5 244 73.0
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 8.3e-91 337.8 286 62.2
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 1.4e-90 337.0 286 62.9
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 2.4e-90 336.3 288 63.9
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 2.4e-90 336.3 217 75.6
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 9.1e-90 334.3 284 61.6
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 9.1e-90 334.3 285 62.5
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.2e-89 334.0 255 68.2
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 1.6e-89 333.6 285 61.4
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 1.6e-89 333.6 263 66.2
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 2.0e-89 333.2 355 53.8
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 2.7e-89 332.8 284 61.6
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 2.7e-89 332.8 287 62.0
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 3.5e-89 332.4 287 61.3
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 3.5e-89 332.4 284 61.3
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.0e-88 330.9 285 61.1
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 1.7e-88 330.1 319 57.1
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 1.7e-88 330.1 287 60.6
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.7e-88 330.1 284 62.3
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 1.7e-88 330.1 284 60.6
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 2.2e-88 329.7 287 60.6
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 3.8e-88 328.9 285 60.4
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 8.5e-88 327.8 287 60.6
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 1.1e-87 327.4 278 64.0
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 1.9e-87 326.6 287 61.3
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 2.5e-87 326.2 243 68.7
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 4.2e-87 325.5 287 60.3
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 4.2e-87 325.5 287 60.3
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 4.2e-87 325.5 287 60.3
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 2.1e-86 323.2 294 59.5
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 1.8e-85 320.1 217 72.4
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 8.8e-85 317.8 303 59.7
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 2.6e-84 316.2 217 71.4
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 9.8e-84 314.3 285 61.4
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 4.9e-83 312.0 287 61.7
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 1.1e-82 310.8 213 71.8
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 5.9e-81 305.1 208 72.1
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.0e-80 304.3 286 58.7
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 2.9e-80 302.8 281 59.1
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 6.6e-80 301.6 230 66.1
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 1.5e-79 300.4 215 69.8
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 1.9e-79 300.1 337 52.5
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 7.3e-79 298.1 285 56.5
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 2.1e-78 296.6 284 57.4
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 9.8e-76 287.7 267 59.2
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 2.9e-75 286.2 264 59.5
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 1.6e-73 280.4 221 66.1
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 2.0e-73 280.0 190 74.2
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 4.6e-73 278.9 244 62.7
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 2.1e-70 270.0 213 63.4
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 6.2e-70 268.5 215 61.9
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 8.0e-70 268.1 220 61.4
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 5.2e-69 265.4 211 62.1
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.9e-63 246.9 254 50.0
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 1.6e-62 243.8 206 60.2
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 2.3e-61 240.0 284 50.4
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 9.8e-60 234.6 429 39.6
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 1.1e-55 221.1 211 51.7
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 4.3e-55 219.2 231 51.1
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.9e-50 203.8 208 49.0
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 1.9e-50 203.8 208 49.0
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 1.1e-47 194.5 126 77.8
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 8.1e-46 188.3 126 74.6
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 2.4e-45 186.8 186 52.7
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 9.3e-42 174.9 121 71.1
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 6.6e-40 168.7 153 57.5
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 2.1e-38 163.7 167 56.9
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.8e-37 160.6 222 42.3
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 4.0e-37 159.5 285 37.9
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 3.4e-36 156.4 222 41.4
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 1.3e-35 154.5 96 79.2
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 1.9e-34 150.6 165 53.3
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 5.4e-34 149.1 97 80.4
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.8e-32 144.1 101 76.2
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 7.1e-26 122.1 94 61.7
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 4.6e-25 119.4 110 60.9
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 1.8e-24 117.5 118 53.4
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 1.3e-22 111.3 91 63.7
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.3e-22 111.3 96 64.6
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 4.0e-21 106.3 160 43.8
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 6.5e-19 99.0 67 71.6
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 8.7e-16 88.6 90 53.3


User provided reference genes

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