Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23391 Nelumbo nucifera HOM05D006599 ORTHO05D008304 4.5e-146 521.2 250 100.0
Nn3g17418 Nelumbo nucifera HOM05D006599 ORTHO05D008304 1.8e-134 482.6 250 89.6
TAR629G1530 Trochodendron aralioides HOM05D006599 ORTHO05D008304 1.2e-125 453.4 248 85.1
QL02p067958 Quercus lobata HOM05D006599 ORTHO05D008304 2.7e-122 442.2 249 81.9
Thecc.04G093300 Theobroma cacao HOM05D006599 ORTHO05D008304 2.7e-122 442.2 250 82.4
COL.COLO4_21402 Corchorus olitorius HOM05D006599 ORTHO05D008304 7.7e-122 440.7 250 81.2
CSS0025230 Camellia sinensis var. sinensis HOM05D006599 ORTHO05D008304 1.7e-121 439.5 250 81.2
TWI34G0408 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 2.8e-119 432.2 250 78.4
Duzib147G0316 Durio zibethinus HOM05D006599 ORTHO05D008304 3.6e-119 431.8 250 80.4
GSVIVG01032932001 Vitis vinifera HOM05D006599 ORTHO05D008304 1.5e-117 426.4 250 80.0
Gohir.A11G072300 Gossypium hirsutum HOM05D006599 ORTHO05D008304 2.6e-117 425.6 250 78.8
TWI32G0394 Tripterygium wilfordii HOM05D006599 ORTHO05D008304 4.4e-117 424.9 250 77.2
Gohir.D11G076400 Gossypium hirsutum HOM05D006599 ORTHO05D008304 9.8e-117 423.7 250 78.4
Gorai.007G082000 Gossypium raimondii HOM05D006599 ORTHO05D008304 9.8e-117 423.7 250 78.4
FvH4_6g47020 Fragaria vesca HOM05D006599 ORTHO05D008304 6.4e-116 421.0 250 76.0
FAN14G4927 Fragaria x ananassa HOM05D006599 ORTHO05D008304 6.4e-116 421.0 250 76.0
Cfa007654 Carpinus fangiana HOM05D006599 ORTHO05D008304 4.1e-115 418.3 250 75.2
FAN09G1977 Fragaria x ananassa HOM05D006599 ORTHO05D008304 5.4e-115 417.9 250 75.6
Atru.chr8.423 Acer truncatum HOM05D006599 ORTHO05D008304 1.6e-114 416.4 250 76.0
Prupe.3G256500 Prunus persica HOM05D006599 ORTHO05D008304 1.6e-114 416.4 250 76.4
FAN02G1129 Fragaria x ananassa HOM05D006599 ORTHO05D008304 5.9e-114 414.5 250 75.2
Manes.02G054000 Manihot esculenta HOM05D006599 ORTHO05D008304 5.9e-114 414.5 250 75.6
RcHm_v2.0_Chr2g0166081 Rosa chinensis HOM05D006599 ORTHO05D008304 5.9e-114 414.5 250 76.8
Hma1.2p1_0481F.1_g162060 Hydrangea macrophylla HOM05D006599 ORTHO05D008304 7.8e-114 414.1 251 76.9
Nitab4.5_0010051g0050 Nicotiana tabacum HOM05D006599 ORTHO05D008304 2.5e-112 409.1 251 76.1
Nitab4.5_0000565g0260 Nicotiana tabacum HOM05D006599 ORTHO05D008304 4.3e-112 408.3 251 75.7
ClCG07G007400 Citrullus lanatus HOM05D006599 ORTHO05D008304 7.3e-112 407.5 250 74.4
Peaxi162Scf00166g00058 Petunia axillaris HOM05D006599 ORTHO05D008304 7.3e-112 407.5 251 75.3
Lsat_1_v5_gn_3_98261 Lactuca sativa HOM05D006599 ORTHO05D008304 2.8e-111 405.6 249 73.9
CiPaw.03G089500 Carya illinoinensis HOM05D006599 ORTHO05D008304 6.2e-111 404.4 250 75.2
Potri.004G119500 Populus trichocarpa HOM05D006599 ORTHO05D008304 8.0e-111 404.1 250 73.2
Sc14g0006220 Simmondsia chinensis HOM05D006599 ORTHO05D008304 1.4e-110 403.3 250 73.6
CAN.G206.218 Capsicum annuum HOM05D006599 ORTHO05D008304 2.3e-110 402.5 251 74.5
Migut.H00636 Erythranthe guttata HOM05D006599 ORTHO05D008304 3.1e-110 402.1 250 70.4
Sabra04G0069000 Salix brachista HOM05D006599 ORTHO05D008304 4.0e-110 401.7 250 73.2
Sopen02g033440 Solanum pennellii HOM05D006599 ORTHO05D008304 5.2e-110 401.4 251 74.1
Solyc02g088730.2 Solanum lycopersicum HOM05D006599 ORTHO05D008304 6.8e-110 401.0 251 74.1
PGSC0003DMG400001449 Solanum tuberosum HOM05D006599 ORTHO05D008304 6.8e-110 401.0 251 73.7
Aqoxy3G00501 Aquilegia oxysepala HOM05D006599 ORTHO05D008304 1.2e-109 400.2 250 75.6
arahy.Tifrunner.gnm1.ann1.CT2P3Y Arachis hypogaea HOM05D006599 ORTHO05D008304 1.2e-109 400.2 252 73.4
MELO3C013909.2 Cucumis melo HOM05D006599 ORTHO05D008304 1.2e-109 400.2 250 72.0
Sabra17G0081900 Salix brachista HOM05D006599 ORTHO05D008304 1.2e-109 400.2 250 72.8
CANSAT64G1926 Cannabis sativa HOM05D006599 ORTHO05D008304 1.5e-109 399.8 254 71.7
arahy.Tifrunner.gnm1.ann1.24WTBT Arachis hypogaea HOM05D006599 ORTHO05D008304 2.0e-109 399.4 252 73.0
Ca_04338_v3 Cicer arietinum L. HOM05D006599 ORTHO05D008304 2.6e-109 399.1 252 73.0
DCAR_025424 Daucus carota HOM05D006599 ORTHO05D008304 3.4e-109 398.7 250 73.2
Potri.017G092800 Populus trichocarpa HOM05D006599 ORTHO05D008304 3.4e-109 398.7 250 72.4
HanXRQChr17g0546571 Helianthus annuus HOM05D006599 ORTHO05D008304 9.8e-109 397.1 250 72.8
Gohir.D09G009200 Gossypium hirsutum HOM05D006599 ORTHO05D008304 2.2e-108 396.0 250 72.8
Gohir.A09G010100 Gossypium hirsutum HOM05D006599 ORTHO05D008304 4.9e-108 394.8 250 73.2
Gorai.006G010900 Gossypium raimondii HOM05D006599 ORTHO05D008304 4.9e-108 394.8 250 72.8
PGR083G1582 Punica granatum HOM05D006599 ORTHO05D008304 4.9e-108 394.8 250 71.2
Psat3g201440 Pisum sativum HOM05D006599 ORTHO05D008304 6.4e-108 394.4 252 70.2
MSTRG.23889 Avicennia marina HOM05D006599 ORTHO05D008304 2.4e-107 392.5 250 70.4
CsaV3_3G002390 Cucumis sativus L. HOM05D006599 ORTHO05D008304 3.2e-107 392.1 250 70.4
MD09G1064500 Malus domestica HOM05D006599 ORTHO05D008304 5.4e-107 391.3 250 73.2
Cc07_g04100 Coffea canephora HOM05D006599 ORTHO05D008304 1.6e-106 389.8 251 72.1
Lalb_Chr17g0337021 Lupinus albus HOM05D006599 ORTHO05D008304 2.0e-106 389.4 252 71.4
Rhsim08G0074600 Rhododendron simsii HOM05D006599 ORTHO05D008304 4.6e-106 388.3 250 70.8
PSO017G0459 Papaver somniferum HOM05D006599 ORTHO05D008304 1.3e-105 386.7 250 70.4
VMungo1383G0637 Vigna mungo HOM05D006599 ORTHO05D008304 1.3e-105 386.7 252 71.0
Medtr7g013160 Medicago truncatula HOM05D006599 ORTHO05D008304 1.7e-105 386.3 252 69.4
Phvul.008G034600 Phaseolus vulgaris HOM05D006599 ORTHO05D008304 1.7e-105 386.3 252 71.0
Glyma.18G265500 Glycine max HOM05D006599 ORTHO05D008304 3.0e-105 385.6 252 71.4
Lj1g0001712 Lotus japonicus HOM05D006599 ORTHO05D008304 5.0e-105 384.8 252 70.2
Sed0027615 Sechium edule HOM05D006599 ORTHO05D008304 5.0e-105 384.8 250 70.0
PSO478G2235 Papaver somniferum HOM05D006599 ORTHO05D008304 9.5e-104 380.6 251 68.9
Thecc.04G093200 Theobroma cacao HOM05D006599 ORTHO05D008304 2.1e-103 379.4 250 72.8
AUR62029230 Chenopodium quinoa HOM05D006599 ORTHO05D008304 3.6e-103 378.6 245 72.2
Oeu047780.1 Olea europaea HOM05D006599 ORTHO05D008304 3.6e-103 378.6 250 69.2
TPR.G33427 Trifolium pratense HOM05D006599 ORTHO05D008304 4.7e-103 378.3 252 69.8
Ciclev10012597m.g Citrus clementina HOM05D006599 ORTHO05D008304 8.1e-103 377.5 250 72.8
ECA232G1145 Erigeron canadensis HOM05D006599 ORTHO05D008304 8.1e-103 377.5 250 69.2
AUR62022778 Chenopodium quinoa HOM05D006599 ORTHO05D008304 6.8e-102 374.4 245 71.8
Eucgr.J01379 Eucalyptus grandis HOM05D006599 ORTHO05D008304 5.8e-101 371.3 249 67.1
Oeu035439.1 Olea europaea HOM05D006599 ORTHO05D008304 9.8e-101 370.5 250 68.0
Thhalv10027896m.g Eutrema salsugineum HOM05D006599 ORTHO05D008304 3.7e-100 368.6 252 67.1
HanXRQChr17g0551751 Helianthus annuus HOM05D006599 ORTHO05D008304 1.4e-99 366.7 250 66.8
Aa31LG9G16680 Aethionema arabicum HOM05D006599 ORTHO05D008304 1.9e-99 366.3 252 66.7
THA.LOC104823890 Tarenaya hassleriana HOM05D006599 ORTHO05D008304 9.2e-99 364.0 249 67.1
AL7G51210 Arabidopsis lyrata HOM05D006599 ORTHO05D008304 2.1e-98 362.8 252 67.5
AT5G39250 Arabidopsis thaliana HOM05D006599 ORTHO05D008304 2.7e-98 362.5 253 67.6
Manes.01G097300 Manihot esculenta HOM05D006599 ORTHO05D008304 3.5e-98 362.1 228 71.9
A04p11970 Brassica napus HOM05D006599 ORTHO05D008304 4.6e-98 361.7 252 65.9
C04p45620 Brassica napus HOM05D006599 ORTHO05D008304 4.6e-98 361.7 252 65.9
BolC4t26144H Brassica oleracea HOM05D006599 ORTHO05D008304 4.6e-98 361.7 252 65.9
BraA04t16862Z Brassica rapa HOM05D006599 ORTHO05D008304 4.6e-98 361.7 252 65.9
Sp7g02740 Schrenkiella parvula HOM05D006599 ORTHO05D008304 1.0e-97 360.5 252 65.5
BcaC02g09687 Brassica carinata HOM05D006599 ORTHO05D008304 1.7e-97 359.8 252 65.5
CARHR263160 Cardamine hirsuta HOM05D006599 ORTHO05D008304 4.3e-96 355.1 252 64.7
SGA_v2.0_scaffold52G19170 Striga asiatica HOM05D006599 ORTHO05D008304 4.3e-96 355.1 251 65.7
BcaB06g27283 Brassica carinata HOM05D006599 ORTHO05D008304 7.3e-96 354.4 252 64.3
Carub.0007s3667 Capsella rubella HOM05D006599 ORTHO05D008304 8.1e-95 350.9 252 63.9
CDE10G0620 Ceratophyllum demersum HOM05D006599 ORTHO05D008304 3.1e-94 349.0 239 64.4
Glyma.08G243300 Glycine max HOM05D006599 ORTHO05D008304 1.2e-93 347.1 262 63.7
ATR0064G081 Amborella trichopoda HOM05D006599 ORTHO05D008304 4.9e-92 341.7 246 63.8
unitig_744.g23984 Utricularia gibba HOM05D006599 ORTHO05D008304 3.9e-89 332.0 250 59.2
Peaxi162Scf00451g00012 Petunia axillaris HOM05D006599 ORTHO05D008304 4.3e-88 328.6 238 63.9
Haze_14439 Corylus avellana HOM05D006599 ORTHO05D008304 1.4e-86 323.6 203 71.4
Os03g0423000 Oryza sativa ssp. japonica HOM05D006599 ORTHO05D008304 1.9e-83 313.2 247 58.3
HPP92_009554 Vanilla planifolia HOM05D006599 ORTHO05D008304 4.6e-82 308.5 247 59.9
HPP92_009527 Vanilla planifolia HOM05D006599 ORTHO05D008304 2.3e-81 306.2 247 59.5
Zm00001eb020180 Zea mays HOM05D006599 ORTHO05D008304 1.5e-80 303.5 248 58.1
SHI25645 Sapria himalayana HOM05D006599 ORTHO05D008304 3.2e-75 285.8 245 55.9
Pp3c13_10960 Physcomitrium patens HOM05D006599 ORTHO05D008304 1.2e-69 267.3 250 50.8
Mapoly0038s0100 Marchantia polymorpha HOM05D006599 ORTHO05D008304 6.0e-66 255.0 251 49.8
FAN05G2816 Fragaria x ananassa HOM05D006599 ORTHO05D008304 2.1e-63 246.5 154 69.5
SMO347G0158 Selaginella moellendorffii HOM05D006599 ORTHO05D008304 4.0e-62 242.3 267 46.1
Dinv34953 Davidia involucrata HOM05D006599 ORTHO05D008304 2.0e-61 240.0 134 85.1
Lsat_1_v5_gn_7_2780 Lactuca sativa HOM05D006599 ORTHO05D008304 1.9e-56 223.4 259 49.4
Peaxi162Scf00451g00005 Petunia axillaris HOM05D006599 ORTHO05D008304 8.2e-55 218.0 286 46.2
Lj4E117T1 Lonicera japonica HOM05D006599 ORTHO05D008304 7.4e-48 194.9 111 76.6
Dinv33823 Davidia involucrata HOM05D006599 ORTHO05D008304 2.6e-45 186.4 99 88.9
Lalb_Chr10g0093051 Lupinus albus HOM05D006599 ORTHO05D008304 1.0e-33 147.9 95 71.6
PGSC0003DMG400031200 Solanum tuberosum HOM05D006599 ORTHO05D008304 4.0e-25 119.4 100 64.0
EL10Ac9g22551 Beta vulgaris HOM05D006599 ORTHO05D008304 4.4e-24 115.9 70 68.6
Peaxi162Scf00270g00422 Petunia axillaris HOM05D006599 ORTHO05D008304 7.7e-21 105.1 153 45.8
Lalb_Chr10g0093041 Lupinus albus HOM05D006599 ORTHO05D008304 1.5e-19 100.9 54 75.9
MD17G1057800 Malus domestica HOM05D006599 ORTHO05D008304 6.8e-17 92.0 52 69.2
TPR.G10380 Trifolium pratense HOM05D006599 ORTHO05D008304 3.8e-12 76.3 45 71.1
Eucgr.K01581 Eucalyptus grandis HOM05D007529 ORTHO05D007451 8.3e-07 58.5 96 36.5
AagrBONN_evm.TU.Sc2ySwM_368.1069 Anthoceros agrestis HOM05D027965 ORTHO05D007451 2.4e-06 57.0 136 33.1
Manes.09G016732 Manihot esculenta HOM05D007529 ORTHO05D007451 3.1e-06 56.6 106 31.1
Manes.09G016600 Manihot esculenta HOM05D007529 ORTHO05D007451 5.4e-06 55.8 106 31.1


User provided reference genes

Program Settings