Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g23128 Nelumbo nucifera HOM05D002602 ORTHO05D002661 4.0e-64 248.1 135 100.0
Nn8g39269 Nelumbo nucifera HOM05D002250 ORTHO05D002661 4.7e-49 198.0 116 93.1
Nn8g39271 Nelumbo nucifera HOM05D002602 ORTHO05D002661 6.9e-32 141.0 96 85.4
TAR636G3129 Trochodendron aralioides HOM05D002602 ORTHO05D002661 3.9e-27 125.2 117 64.1
Nn2g11832 Nelumbo nucifera HOM05D002602 ORTHO05D002661 5.1e-27 124.8 112 67.0
MBI01_g10036_MAGBIO Magnolia biondii HOM05D002602 ORTHO05D002661 7.3e-26 120.9 96 74.0
TAR383G0480 Trochodendron aralioides HOM05D002602 ORTHO05D002661 2.1e-25 119.4 114 59.6
GSVIVG01035728001 Vitis vinifera HOM05D002602 ORTHO05D002661 1.4e-21 106.7 108 60.2
TAR624G0315 Trochodendron aralioides HOM05D002602 ORTHO05D002661 2.4e-21 105.9 109 60.6
Dinv30216 Davidia involucrata HOM05D002602 ORTHO05D002661 3.5e-20 102.1 116 61.2
Dinv35879 Davidia involucrata HOM05D002602 ORTHO05D002661 1.0e-19 100.5 116 61.2
CDE07G1242 Ceratophyllum demersum HOM05D002602 ORTHO05D002661 3.9e-19 98.6 73 75.3
ATR0037G044 Amborella trichopoda HOM05D002602 ORTHO05D002661 1.9e-18 96.3 115 56.5
Duzib150G1692 Durio zibethinus HOM05D002602 ORTHO05D002661 2.5e-18 95.9 124 50.0
FvH4_2g30190 Fragaria vesca HOM05D002602 ORTHO05D002661 4.3e-18 95.1 113 56.6
FAN20G3150 Fragaria x ananassa HOM05D002602 ORTHO05D002661 4.3e-18 95.1 113 56.6
Sed0025801 Sechium edule HOM05D002602 ORTHO05D002661 1.3e-17 93.6 120 55.0
Actinidia13291 Actinidia chinensis HOM05D002602 ORTHO05D002661 2.1e-17 92.8 115 60.9
Haze_21626 Corylus avellana HOM05D002602 ORTHO05D002661 2.8e-17 92.4 105 59.0
RcHm_v2.0_Chr6g0312721 Rosa chinensis HOM05D002602 ORTHO05D002661 2.8e-17 92.4 100 61.0
Actinidia15713 Actinidia chinensis HOM05D002602 ORTHO05D002661 4.8e-17 91.7 116 56.0
TAR626G0862 Trochodendron aralioides HOM05D002602 ORTHO05D002661 8.1e-17 90.9 116 56.0
MD15G1114900 Malus domestica HOM05D002602 ORTHO05D002661 1.1e-16 90.5 116 56.0
MBI04_g20759_MAGBIO Magnolia biondii HOM05D002602 ORTHO05D002661 1.4e-16 90.1 74 73.0
Atru.chr7.2321 Acer truncatum HOM05D002602 ORTHO05D002661 3.1e-16 89.0 114 52.6
SGA_v2.0_scaffold169G38633 Striga asiatica HOM05D002602 ORTHO05D002661 3.1e-16 89.0 120 50.0
Oeu031564.1 Olea europaea HOM05D002602 ORTHO05D002661 1.2e-15 87.0 100 60.0
Sabra18G0035600 Salix brachista HOM05D002602 ORTHO05D002661 1.2e-15 87.0 77 66.2
DCAR_023980 Daucus carota HOM05D002602 ORTHO05D002661 3.4e-15 85.5 100 59.0
unitig_0.g2813 Utricularia gibba HOM05D002602 ORTHO05D002661 5.8e-15 84.7 101 62.4
CsaV3_3G046710 Cucumis sativus L. HOM05D002602 ORTHO05D002661 7.6e-15 84.3 113 54.0
FAN27G2877 Fragaria x ananassa HOM05D002602 ORTHO05D002661 7.6e-15 84.3 99 61.6
Actinidia14641 Actinidia chinensis HOM05D002250 ORTHO05D002393 9.9e-15 84.0 116 51.7
AT4G32610 Arabidopsis thaliana HOM05D002602 ORTHO05D002661 9.9e-15 84.0 117 47.9
SalBow8G1639 Salvia bowleyana HOM05D002602 ORTHO05D002661 9.9e-15 84.0 98 63.3
C01p06340 Brassica napus HOM05D002602 ORTHO05D002661 1.3e-14 83.6 115 47.8
Migut.E01502 Erythranthe guttata HOM05D002602 ORTHO05D002661 1.3e-14 83.6 73 64.4
Oeu014657.1 Olea europaea HOM05D002602 ORTHO05D002661 1.3e-14 83.6 124 49.2
BolC1t00630H Brassica oleracea HOM05D002602 ORTHO05D002661 1.7e-14 83.2 115 47.8
AL7G19150 Arabidopsis lyrata HOM05D002602 ORTHO05D002661 2.9e-14 82.4 98 54.1
Lsat_1_v5_gn_7_43001 Lactuca sativa HOM05D002602 ORTHO05D002661 2.9e-14 82.4 74 64.9
Potri.018G034800 Populus trichocarpa HOM05D002602 ORTHO05D002661 2.9e-14 82.4 78 59.0
Potri.006G246300 Populus trichocarpa HOM05D002602 ORTHO05D002661 3.8e-14 82.0 78 60.3
Actinidia13423 Actinidia chinensis HOM05D002250 ORTHO05D002393 6.4e-14 81.3 116 53.4
Oeu019415.1 Olea europaea HOM05D002602 ORTHO05D002661 6.4e-14 81.3 124 48.4
BraA01t00546Z Brassica rapa HOM05D002602 ORTHO05D002661 8.4e-14 80.9 110 47.3
unitig_747.g21878 Utricularia gibba HOM05D002602 ORTHO05D002661 1.1e-13 80.5 101 59.4
A01p05770 Brassica napus HOM05D002602 ORTHO05D002661 1.4e-13 80.1 109 47.7
Migut.A00271 Erythranthe guttata HOM05D002602 ORTHO05D002661 1.4e-13 80.1 122 47.5
Gohir.D05G011600 Gossypium hirsutum HOM05D002602 ORTHO05D002661 1.4e-13 80.1 118 50.0
Lalb_Chr23g0269011 Lupinus albus HOM05D002602 ORTHO05D002661 1.4e-13 80.1 94 53.2
Carub.0007s0793 Capsella rubella HOM05D002602 ORTHO05D002661 1.9e-13 79.7 96 58.3
Lsat_1_v5_gn_8_94581 Lactuca sativa HOM05D002602 ORTHO05D002661 2.4e-13 79.3 77 61.0
SGA_v2.0_scaffold163G38094 Striga asiatica HOM05D002250 ORTHO05D002393 2.4e-13 79.3 121 50.4
Manes.16G068400 Manihot esculenta HOM05D002602 ORTHO05D002661 3.2e-13 79.0 104 57.7
Psat5g026840 Pisum sativum HOM05D002602 ORTHO05D002661 5.5e-13 78.2 96 51.0
Duzib168G0558 Durio zibethinus HOM05D002602 ORTHO05D002661 7.1e-13 77.8 102 52.9
Gohir.A08G237200 Gossypium hirsutum HOM05D002602 ORTHO05D002661 7.1e-13 77.8 101 56.4
MSTRG.14002 Avicennia marina HOM05D002602 ORTHO05D002661 9.3e-13 77.4 99 53.5
Cpa.g.sc23.149 Carica papaya HOM05D002602 ORTHO05D002661 1.6e-12 76.6 74 67.6
Oeu045175.1 Olea europaea HOM05D002602 ORTHO05D002661 1.6e-12 76.6 127 43.3
ClCG05G017230 Citrullus lanatus HOM05D002602 ORTHO05D002661 2.1e-12 76.3 113 50.4
CSS0023863 Camellia sinensis var. sinensis HOM05D002250 ORTHO05D002393 2.7e-12 75.9 98 58.2
Cpa.g.sc23.148 Carica papaya HOM05D002602 ORTHO05D002661 2.7e-12 75.9 74 64.9
Hma1.2p1_0175F.1_g077310 Hydrangea macrophylla HOM05D002602 ORTHO05D002661 2.7e-12 75.9 117 53.0
CANSAT56G2101 Cannabis sativa HOM05D002602 ORTHO05D002661 3.5e-12 75.5 89 62.9
CARHR115580 Cardamine hirsuta HOM05D002602 ORTHO05D002661 3.5e-12 75.5 100 52.0
Thhalv10025336m.g Eutrema salsugineum HOM05D002602 ORTHO05D002661 3.5e-12 75.5 73 57.5
Gohir.A05G010900 Gossypium hirsutum HOM05D002602 ORTHO05D002661 3.5e-12 75.5 116 45.7
Gorai.009G011900 Gossypium raimondii HOM05D002602 ORTHO05D002661 3.5e-12 75.5 116 44.8
Oeu037592.1 Olea europaea HOM05D002602 ORTHO05D002661 3.5e-12 75.5 112 52.7
TWI32G1161 Tripterygium wilfordii HOM05D002602 ORTHO05D002661 4.6e-12 75.1 96 60.4
SalBow4G3032 Salvia bowleyana HOM05D002602 ORTHO05D002661 6.0e-12 74.7 102 55.9
Psat5g026800 Pisum sativum HOM05D002602 ORTHO05D002661 7.9e-12 74.3 96 54.2
Hund03001 Selenicereus undatus HOM05D002602 ORTHO05D002661 7.9e-12 74.3 123 48.8
Manes.16G068500 Manihot esculenta HOM05D002602 ORTHO05D002661 1.0e-11 73.9 104 54.8
BcaC09g52052 Brassica carinata HOM05D002602 ORTHO05D002661 1.3e-11 73.6 96 53.1
CSS0015478 Camellia sinensis var. sinensis HOM05D002250 ORTHO05D002393 1.3e-11 73.6 98 57.1
Phvul.009G098300 Phaseolus vulgaris HOM05D002602 ORTHO05D002661 1.3e-11 73.6 93 45.2
TWI63G0040 Tripterygium wilfordii HOM05D002602 ORTHO05D002661 2.3e-11 72.8 96 58.3
unitig_32.g10925 Utricularia gibba HOM05D002602 ORTHO05D002661 2.3e-11 72.8 79 55.7
CDE06G2071 Ceratophyllum demersum HOM05D002250 ORTHO05D002393 3.0e-11 72.4 51 74.5
vmacro05448 Vaccinium macrocarpon HOM05D002602 ORTHO05D002661 3.0e-11 72.4 74 58.1
Duzib187G0766 Durio zibethinus HOM05D002602 ORTHO05D002661 3.9e-11 72.0 97 50.5
Sed0014074 Sechium edule HOM05D002602 ORTHO05D002661 3.9e-11 72.0 113 46.9
Solyc05g018490.3 Solanum lycopersicum HOM05D002602 ORTHO05D002661 5.1e-11 71.6 73 63.0
Sopen05g015460 Solanum pennellii HOM05D002602 ORTHO05D002661 5.1e-11 71.6 73 63.0
THA.LOC104803776 Tarenaya hassleriana HOM05D002602 ORTHO05D002661 5.1e-11 71.6 102 53.9
Glyma.06G073800 Glycine max HOM05D002602 ORTHO05D002661 6.7e-11 71.2 96 54.2
TWI34G1255 Tripterygium wilfordii HOM05D002602 ORTHO05D002661 6.7e-11 71.2 96 52.1
HanXRQChr10g0317411 Helianthus annuus HOM05D002602 ORTHO05D002661 1.1e-10 70.5 73 56.2
Phvul.003G176400 Phaseolus vulgaris HOM05D002602 ORTHO05D002661 1.5e-10 70.1 113 48.7
Glyma.04G072600 Glycine max HOM05D002602 ORTHO05D002661 5.6e-10 68.2 96 53.1
Nitab4.5_0000042g0010 Nicotiana tabacum HOM05D002602 ORTHO05D002661 5.6e-10 68.2 76 60.5
Nitab4.5_0000066g0030 Nicotiana tabacum HOM05D002602 ORTHO05D002661 5.6e-10 68.2 96 58.3
Thecc.09G115500 Theobroma cacao HOM05D002602 ORTHO05D002661 5.6e-10 68.2 117 44.4
PGR031G2332 Punica granatum HOM05D002602 ORTHO05D002661 9.6e-10 67.4 78 56.4
MSTRG.1648 Avicennia marina HOM05D002602 ORTHO05D002661 1.3e-09 67.0 99 50.5
Peaxi162Scf00552g00311 Petunia axillaris HOM05D002602 ORTHO05D002661 1.3e-09 67.0 75 61.3
VMungo1309G1769 Vigna mungo HOM05D002602 ORTHO05D002661 1.3e-09 67.0 94 50.0
PGSC0003DMG400027440 Solanum tuberosum HOM05D002602 ORTHO05D002661 1.6e-09 66.6 74 59.5
Duzib150G1573 Durio zibethinus HOM05D002602 ORTHO05D002661 2.1e-09 66.2 105 44.8
PSO063G7370 Papaver somniferum HOM05D002602 ORTHO05D002661 2.1e-09 66.2 106 57.5
Sopen08g021800 Solanum pennellii HOM05D002602 ORTHO05D002661 2.1e-09 66.2 112 47.3
Thecc.09G115400 Theobroma cacao HOM05D002602 ORTHO05D002661 2.1e-09 66.2 106 46.2
unitig_748.g8208 Utricularia gibba HOM05D002602 ORTHO05D002661 2.1e-09 66.2 79 54.4
HPP92_005547 Vanilla planifolia HOM05D002602 ORTHO05D002661 2.1e-09 66.2 97 51.5
EL10Ac2g02533 Beta vulgaris HOM05D002602 ORTHO05D002661 2.8e-09 65.9 117 40.2
Solyc08g067880.4 Solanum lycopersicum HOM05D002602 ORTHO05D002661 2.8e-09 65.9 112 46.4
BcaNung04518 Brassica carinata HOM05D002602 ORTHO05D002661 3.7e-09 65.5 75 53.3
Gohir.A07G003400 Gossypium hirsutum HOM05D002602 ORTHO05D002661 3.7e-09 65.5 124 47.6
PSO782G3209 Papaver somniferum HOM05D002602 ORTHO05D002661 3.7e-09 65.5 106 55.7
BraA09t40953Z Brassica rapa HOM05D002602 ORTHO05D002661 4.8e-09 65.1 118 41.5
CiPaw.07G217400 Carya illinoinensis HOM05D002602 ORTHO05D002661 4.8e-09 65.1 78 51.3
Gohir.D07G003800 Gossypium hirsutum HOM05D002602 ORTHO05D002661 4.8e-09 65.1 117 42.7
Gorai.001G003500 Gossypium raimondii HOM05D002602 ORTHO05D002661 4.8e-09 65.1 117 42.7
Rhsim02G0187000 Rhododendron simsii HOM05D002602 ORTHO05D002661 4.8e-09 65.1 114 41.2
THA.LOC104803817 Tarenaya hassleriana HOM05D002602 ORTHO05D002661 4.8e-09 65.1 102 50.0
Aa31sc329G20 Aethionema arabicum HOM05D002602 ORTHO05D002661 6.2e-09 64.7 99 49.5
Aqoxy7G01832 Aquilegia oxysepala HOM05D002602 ORTHO05D002661 6.2e-09 64.7 71 52.1
AT2G25670 Arabidopsis thaliana HOM05D002602 ORTHO05D002661 6.2e-09 64.7 97 49.5
A09p55510 Brassica napus HOM05D002602 ORTHO05D002661 6.2e-09 64.7 118 41.5
Sc06g0000680 Simmondsia chinensis HOM05D002602 ORTHO05D002661 8.2e-09 64.3 97 53.6
HanXRQChr09g0240461 Helianthus annuus HOM05D002602 ORTHO05D002661 1.1e-08 63.9 73 58.9
Solyc08g150138.1 Solanum lycopersicum HOM05D002602 ORTHO05D002661 1.4e-08 63.5 113 45.1
Sopen08g021810 Solanum pennellii HOM05D002602 ORTHO05D002661 1.4e-08 63.5 113 45.1
Gohir.A13G203900 Gossypium hirsutum HOM05D002602 ORTHO05D002661 1.8e-08 63.2 100 48.0
CiPaw.08G015900 Carya illinoinensis HOM05D002602 ORTHO05D002661 3.1e-08 62.4 101 47.5
Ciclev10008908m.g Citrus clementina HOM05D002602 ORTHO05D002661 3.1e-08 62.4 116 46.6
Gohir.D08G257800 Gossypium hirsutum HOM05D002602 ORTHO05D002661 4.0e-08 62.0 102 50.0
Lj7A711G44 Lonicera japonica HOM05D002602 ORTHO05D002661 4.0e-08 62.0 84 58.3
Prupe.1G466300 Prunus persica HOM05D002602 ORTHO05D002661 4.0e-08 62.0 116 46.6
Lj1g0024566 Lotus japonicus HOM05D002602 ORTHO05D002661 6.9e-08 61.2 95 42.1
Dinv41572 Davidia involucrata HOM05D002602 ORTHO05D002661 9.0e-08 60.8 113 46.9
QL12p031218 Quercus lobata HOM05D002602 ORTHO05D002661 9.0e-08 60.8 77 49.4
vmacro05449 Vaccinium macrocarpon HOM05D002250 ORTHO05D002393 9.0e-08 60.8 47 68.1
Duzib168G1527 Durio zibethinus HOM05D002602 ORTHO05D002661 1.2e-07 60.5 123 38.2
Carub.0004s0546 Capsella rubella HOM05D002602 ORTHO05D002661 1.5e-07 60.1 99 47.5
PGSC0003DMG401014502 Solanum tuberosum HOM05D002602 ORTHO05D002661 1.5e-07 60.1 90 50.0
Atru.chr7.1291 Acer truncatum HOM05D002602 ORTHO05D002661 2.0e-07 59.7 94 57.4
BolC7t46373H Brassica oleracea HOM05D002602 ORTHO05D002661 2.0e-07 59.7 65 53.8
VMungo1215G0338 Vigna mungo HOM05D002602 ORTHO05D002661 2.0e-07 59.7 74 52.7
BcaC01g01010 Brassica carinata HOM05D002602 ORTHO05D002661 2.6e-07 59.3 96 42.7
Gorai.004G274800 Gossypium raimondii HOM05D002602 ORTHO05D002661 3.4e-07 58.9 102 49.0
SEGI_05752 Sequoiadendron giganteum HOM05D002602 ORTHO05D002661 3.4e-07 58.9 82 50.0
Thhalv10000247m.g Eutrema salsugineum HOM05D002602 ORTHO05D002661 4.5e-07 58.5 98 45.9
FAN26G0699 Fragaria x ananassa HOM05D002602 ORTHO05D002661 5.8e-07 58.2 98 48.0
FAN26G2978 Fragaria x ananassa HOM05D002602 ORTHO05D002661 5.8e-07 58.2 98 48.0
Gohir.D13G209200 Gossypium hirsutum HOM05D002602 ORTHO05D002661 5.8e-07 58.2 100 46.0
Pp3c7_3330 Physcomitrium patens HOM05D002602 ORTHO05D002661 1.0e-06 57.4 87 44.8
Gorai.013G238300 Gossypium raimondii HOM05D002602 ORTHO05D002661 1.3e-06 57.0 110 41.8
Zm00001eb300980 Zea mays HOM05D002602 ORTHO05D002661 1.3e-06 57.0 93 39.8
AagrBONN_evm.TU.Sc2ySwM_228.1297 Anthoceros agrestis HOM05D002602 ORTHO05D002661 1.7e-06 56.6 76 47.4
Lsat_1_v5_gn_5_99801 Lactuca sativa HOM05D002602 ORTHO05D002661 2.9e-06 55.8 77 48.1
Prupe.7G226700 Prunus persica HOM05D002602 ORTHO05D002661 3.8e-06 55.5 87 44.8
RcHm_v2.0_Chr2g0091121 Rosa chinensis HOM05D002602 ORTHO05D002661 3.8e-06 55.5 87 50.6
ATR0121G009 Amborella trichopoda HOM05D002250 ORTHO05D002393 4.9e-06 55.1 28 89.3
arahy.Tifrunner.gnm1.ann1.XP9K23 Arachis hypogaea HOM05D002250 ORTHO05D002393 4.9e-06 55.1 28 89.3
arahy.Tifrunner.gnm1.ann1.YQ853S Arachis hypogaea HOM05D002250 ORTHO05D002393 4.9e-06 55.1 28 89.3
Ca_15695_v3 Cicer arietinum L. HOM05D002602 ORTHO05D002661 4.9e-06 55.1 97 46.4
Gohir.A06G048200 Gossypium hirsutum HOM05D002250 ORTHO05D002393 4.9e-06 55.1 28 89.3
Gohir.D06G048200 Gossypium hirsutum HOM05D002250 ORTHO05D002393 4.9e-06 55.1 28 89.3
Nn8g39268 Nelumbo nucifera HOM05D002250 ORTHO05D002393 4.9e-06 55.1 28 89.3
PSO063G6573 Papaver somniferum HOM05D002250 ORTHO05D002393 4.9e-06 55.1 28 89.3
PSO782G3325 Papaver somniferum HOM05D002250 ORTHO05D002393 4.9e-06 55.1 28 89.3
TAR624G0306 Trochodendron aralioides HOM05D002250 ORTHO05D002393 4.9e-06 55.1 28 89.3
TAR636G2212 Trochodendron aralioides HOM05D002250 ORTHO05D002393 4.9e-06 55.1 28 89.3
GSVIVG01035729001 Vitis vinifera HOM05D002250 ORTHO05D002393 4.9e-06 55.1 28 89.3
Zm00001eb347000 Zea mays HOM05D002602 ORTHO05D002661 4.9e-06 55.1 75 45.3
CiPaw.07G217300 Carya illinoinensis HOM05D002250 ORTHO05D002393 8.4e-06 54.3 28 85.7
CiPaw.08G016000 Carya illinoinensis HOM05D002250 ORTHO05D002393 8.4e-06 54.3 28 85.7
ClCG08G012870 Citrullus lanatus HOM05D002250 ORTHO05D002393 8.4e-06 54.3 28 85.7
MELO3C011211.2 Cucumis melo HOM05D002250 ORTHO05D002393 8.4e-06 54.3 28 85.7
CsaV3_2G031590 Cucumis sativus L. HOM05D002286 ORTHO05D002468 8.4e-06 54.3 28 85.7
Duzib168G0800 Durio zibethinus HOM05D002250 ORTHO05D002393 8.4e-06 54.3 28 85.7
Duzib187G1129 Durio zibethinus HOM05D002250 ORTHO05D002393 8.4e-06 54.3 28 85.7
FAN23G0655 Fragaria x ananassa HOM05D002602 ORTHO05D002661 8.4e-06 54.3 98 43.9
Glyma.04G072800 Glycine max HOM05D002250 ORTHO05D002393 8.4e-06 54.3 28 85.7
Glyma.06G073900 Glycine max HOM05D002250 ORTHO05D002393 8.4e-06 54.3 28 85.7
Glyma.06G074000 Glycine max HOM05D002250 ORTHO05D002393 8.4e-06 54.3 28 85.7
Pp3c11_18960 Physcomitrium patens HOM05D002602 ORTHO05D002661 8.4e-06 54.3 87 42.5
Prupe.1G466200 Prunus persica HOM05D002250 ORTHO05D002393 8.4e-06 54.3 28 85.7
TPR.G34682 Trifolium pratense HOM05D002602 ORTHO05D002661 8.4e-06 54.3 89 44.9


User provided reference genes

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