Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1999.6 1031 100.0
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1682.5 1030 82.6
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1679.8 1026 85.1
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1621.3 1032 79.6
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1594.3 1033 79.3
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1586.2 1026 78.5
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1558.1 1055 77.2
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1554.3 1036 76.4
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1554.3 1033 77.0
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1552.3 1043 76.6
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1550.0 1027 76.2
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1545.0 1017 77.1
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1544.3 1026 76.1
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1543.9 932 83.0
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1541.6 1035 76.1
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1538.5 1031 75.9
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1534.2 1022 75.8
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1532.3 1042 76.0
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1530.4 1020 76.5
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1529.6 1031 76.0
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1528.8 1022 75.5
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1526.1 1042 75.8
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1520.8 1027 75.2
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1509.6 1019 75.9
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1506.9 1028 75.3
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1505.7 1026 74.4
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1504.6 1028 74.7
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1496.5 1026 74.9
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1492.2 1029 74.8
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1491.9 1032 75.9
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1491.1 1019 75.0
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1490.7 1016 75.8
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1490.7 1028 74.4
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1485.7 1048 73.1
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1482.6 1035 74.3
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1479.2 977 76.6
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1478.4 1035 74.0
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1475.3 1033 73.4
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1473.0 1035 73.2
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1471.1 1033 73.8
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1469.5 1038 73.4
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1469.1 1032 73.9
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1468.8 1057 72.3
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1460.7 1050 72.7
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1460.3 1002 74.1
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1459.5 1036 72.7
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1458.0 1014 74.1
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1457.2 1085 70.8
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1454.1 1025 72.7
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1453.3 1022 73.6
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1453.0 1029 73.2
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1452.6 1006 73.8
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1451.8 1036 72.8
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1451.8 1036 72.8
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1451.8 1016 73.3
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1450.6 1022 73.4
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1450.3 1029 73.1
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1448.3 1006 73.7
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1447.6 1028 72.9
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1446.4 1029 72.8
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1445.6 1035 71.9
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1445.3 1033 71.8
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1443.3 1020 73.6
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1442.6 1018 73.0
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1441.0 1018 72.0
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1440.6 1020 73.5
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1439.9 1035 72.5
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1439.5 1020 72.9
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1439.1 1018 72.8
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1438.7 1026 72.2
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1437.6 1073 69.3
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1437.2 1064 70.9
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1433.3 1006 73.3
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1430.2 1019 72.1
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1421.8 1030 71.6
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1421.0 1006 72.4
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1420.2 1014 72.6
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1420.2 1020 71.3
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1416.0 1036 70.0
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1412.5 1027 71.0
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1411.7 1018 71.9
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1411.4 1016 70.9
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1406.0 1019 71.4
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1405.2 1013 70.5
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1405.2 1034 70.6
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1403.7 1043 69.1
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1396.3 1029 70.5
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1395.6 1026 69.8
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1385.5 1022 70.4
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1384.0 1035 69.9
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1371.3 1024 69.6
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1369.0 1028 69.7
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1368.6 1029 69.5
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1367.1 1028 69.6
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1365.9 1028 69.5
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1363.2 1029 69.4
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1359.4 1032 69.2
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1358.2 1031 68.1
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1354.0 1023 69.1
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1352.4 987 70.4
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1344.7 1038 68.0
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1342.0 1019 67.3
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1340.9 1039 68.0
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1340.5 1039 67.9
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1335.1 1038 67.7
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1331.6 893 77.2
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1330.1 892 76.5
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1319.3 1047 65.9
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1312.0 1024 67.7
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1311.6 913 74.7
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1309.3 980 69.5
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1302.7 1039 66.7
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1301.6 999 68.4
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1300.4 1039 66.7
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1294.3 1035 65.9
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1289.6 1028 66.3
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1288.9 1032 66.0
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1281.2 1017 67.7
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1273.8 1050 64.7
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1255.0 1036 65.3
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1250.7 993 66.5
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1236.5 933 68.6
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1216.4 1027 64.8
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1215.7 1019 65.6
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1213.7 1034 63.8
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1206.8 1009 64.3
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1143.6 1076 59.0
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1131.7 853 68.6
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1097.0 906 64.8
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 2.7e-306 1055.4 989 57.7
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 4.4e-304 1048.1 1043 58.3
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 7.5e-296 1020.8 787 70.4
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 1.0e-292 1010.4 839 63.8
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 4.1e-278 961.8 761 70.3
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.6e-269 933.3 1010 51.8
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 2.3e-268 929.5 712 69.9
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 2.9e-263 912.5 1030 50.8
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.2e-253 880.6 973 49.9
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.3e-252 877.1 974 49.6
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 1.7e-247 860.1 1027 48.9
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 7.1e-230 801.6 837 52.9
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 6.0e-229 798.5 838 53.8
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.4e-206 724.2 911 46.3
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.9e-206 723.8 724 60.4
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 3.8e-199 699.5 658 58.5
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.9e-198 697.2 824 52.4
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 8.3e-178 628.6 635 56.4
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 4.7e-173 612.8 975 40.1
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.2e-157 561.6 603 52.9
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 3.2e-153 547.0 661 49.3
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.2e-152 545.0 632 50.0
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 1.2e-149 535.0 1132 34.5
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 1.3e-135 488.4 393 62.3
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 6.6e-127 459.5 644 46.0
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 6.9e-116 422.9 274 79.2
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 2.9e-114 417.5 543 46.4
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.2e-101 374.8 234 81.6
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.7e-88 331.3 310 57.7
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 4.5e-83 313.9 272 63.6
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 1.5e-73 282.3 627 33.8
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 1.8e-68 265.4 303 52.5
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 7.7e-67 260.0 216 59.3
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 5.9e-59 233.8 1083 25.9
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 5.4e-52 210.7 236 46.6
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.9e-50 204.5 174 58.0
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 1.0e-47 196.4 149 65.1
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 1.4e-47 196.1 933 24.3
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.2e-46 193.0 147 59.9
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 4.9e-45 187.6 144 65.3
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 7.1e-36 157.1 192 49.0
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 1.6e-32 146.0 128 57.8
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 8.6e-26 123.6 112 55.4
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 5.6e-25 120.9 96 58.3
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 5.6e-25 120.9 96 58.3
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 4.0e-15 88.2 60 73.3
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 1.2e-14 86.7 63 74.6
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 1.3e-13 83.2 66 62.1


User provided reference genes

Program Settings