Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12251 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.4e-38 162.5 86 100.0
Nn2g16054 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.4e-38 162.5 86 100.0
Aqoxy7G03529 Aquilegia oxysepala HOM05D004589 ORTHO05D005848 7.2e-35 150.2 86 90.7
PSO210G3160 Papaver somniferum HOM05D004589 ORTHO05D005848 9.4e-35 149.8 83 94.0
TAR383G0245 Trochodendron aralioides HOM05D004589 ORTHO05D005848 1.6e-34 149.1 86 89.5
Duzib150G1268 Durio zibethinus HOM05D004589 ORTHO05D005848 2.7e-34 148.3 86 89.5
Thecc.09G019500 Theobroma cacao HOM05D004589 ORTHO05D005848 6.1e-34 147.1 86 88.4
COL.COLO4_18916 Corchorus olitorius HOM05D004589 ORTHO05D005848 1.0e-33 146.4 86 87.2
Manes.03G011700 Manihot esculenta HOM05D004589 ORTHO05D005848 1.0e-33 146.4 86 87.2
Dinv03411 Davidia involucrata HOM05D004589 ORTHO05D005848 1.8e-33 145.6 82 90.2
Hma1.2p1_0167F.1_g073640 Hydrangea macrophylla HOM05D004589 ORTHO05D005848 1.8e-33 145.6 82 90.2
TWI63G0229 Tripterygium wilfordii HOM05D004589 ORTHO05D005848 1.8e-33 145.6 86 87.2
Cc08_g00190 Coffea canephora HOM05D004589 ORTHO05D005848 2.3e-33 145.2 81 91.4
Eucgr.C02726 Eucalyptus grandis HOM05D004589 ORTHO05D005848 3.0e-33 144.8 83 88.0
Gohir.A07G030400 Gossypium hirsutum HOM05D004589 ORTHO05D005848 3.0e-33 144.8 86 87.2
Gohir.D07G034300 Gossypium hirsutum HOM05D004589 ORTHO05D005848 3.0e-33 144.8 86 87.2
Gorai.001G035900 Gossypium raimondii HOM05D004589 ORTHO05D005848 3.0e-33 144.8 86 87.2
ATR0629G049 Amborella trichopoda HOM05D004589 ORTHO05D005848 3.9e-33 144.4 83 86.7
CiPaw.08G008300 Carya illinoinensis HOM05D004589 ORTHO05D005848 3.9e-33 144.4 83 88.0
FvH4_2g28290 Fragaria vesca HOM05D004589 ORTHO05D005848 3.9e-33 144.4 83 88.0
FAN15G2875 Fragaria x ananassa HOM05D004589 ORTHO05D005848 3.9e-33 144.4 83 88.0
FAN20G1713 Fragaria x ananassa HOM05D004589 ORTHO05D005848 3.9e-33 144.4 83 88.0
FAN24G2656 Fragaria x ananassa HOM05D004589 ORTHO05D005848 3.9e-33 144.4 83 88.0
Lj8A732G29 Lonicera japonica HOM05D004589 ORTHO05D005848 3.9e-33 144.4 86 87.2
MD15G1131100 Malus domestica HOM05D004589 ORTHO05D005848 3.9e-33 144.4 83 88.0
Prupe.1G486400 Prunus persica HOM05D004589 ORTHO05D005848 3.9e-33 144.4 83 88.0
RcHm_v2.0_Chr6g0297201 Rosa chinensis HOM05D004589 ORTHO05D005848 3.9e-33 144.4 83 88.0
Cfa013100 Carpinus fangiana HOM05D004589 ORTHO05D005848 5.2e-33 144.1 86 86.0
Haze_21457 Corylus avellana HOM05D004589 ORTHO05D005848 5.2e-33 144.1 86 86.0
MSTRG.1735 Avicennia marina HOM05D004589 ORTHO05D005848 6.7e-33 143.7 86 86.0
AUR62012448 Chenopodium quinoa HOM05D004589 ORTHO05D005848 8.8e-33 143.3 86 86.0
Ciclev10007276m.g Citrus clementina HOM05D004589 ORTHO05D005848 8.8e-33 143.3 84 86.9
DCAR_021911 Daucus carota HOM05D004589 ORTHO05D005848 8.8e-33 143.3 81 90.1
FAN27G1181 Fragaria x ananassa HOM05D004589 ORTHO05D005848 8.8e-33 143.3 83 88.0
Sc23g0006530 Simmondsia chinensis HOM05D004589 ORTHO05D005848 8.8e-33 143.3 82 87.8
CDE05G2463 Ceratophyllum demersum HOM05D004589 ORTHO05D005848 1.1e-32 142.9 86 86.0
QL02p020149 Quercus lobata HOM05D004589 ORTHO05D005848 1.1e-32 142.9 86 84.9
ClCG05G016580 Citrullus lanatus HOM05D004589 ORTHO05D005848 1.5e-32 142.5 86 84.9
Atru.chr7.2502 Acer truncatum HOM05D004589 ORTHO05D005848 2.0e-32 142.1 86 84.9
Actinidia23085 Actinidia chinensis HOM05D004589 ORTHO05D005848 2.0e-32 142.1 86 83.7
AUR62031571 Chenopodium quinoa HOM05D004589 ORTHO05D005848 2.0e-32 142.1 86 84.9
Gohir.A06G100000 Gossypium hirsutum HOM05D004589 ORTHO05D005848 2.0e-32 142.1 81 88.9
Gorai.010G117200 Gossypium raimondii HOM05D004589 ORTHO05D005848 2.0e-32 142.1 81 88.9
HPP92_020312 Vanilla planifolia HOM05D004589 ORTHO05D005848 2.0e-32 142.1 83 85.5
GSVIVG01035919001 Vitis vinifera HOM05D004589 ORTHO05D005848 2.0e-32 142.1 86 84.9
Actinidia14103 Actinidia chinensis HOM05D004589 ORTHO05D005848 2.6e-32 141.7 86 83.7
CANSAT11G1771 Cannabis sativa HOM05D004589 ORTHO05D005848 3.3e-32 141.4 83 86.7
MELO3C016987.2 Cucumis melo HOM05D004589 ORTHO05D005848 3.3e-32 141.4 86 83.7
CsaV3_4G036860 Cucumis sativus L. HOM05D004589 ORTHO05D005848 3.3e-32 141.4 86 83.7
PGR044G0530 Punica granatum HOM05D004589 ORTHO05D005848 4.4e-32 141.0 82 87.8
RhsimUnG0052600 Rhododendron simsii HOM05D004589 ORTHO05D005848 4.4e-32 141.0 86 83.7
RhsimUnG0165300 Rhododendron simsii HOM05D004589 ORTHO05D005848 4.4e-32 141.0 86 83.7
Ca_13043_v3 Cicer arietinum L. HOM05D004589 ORTHO05D005848 5.7e-32 140.6 83 84.3
Glyma.17G215700 Glycine max HOM05D004589 ORTHO05D005848 5.7e-32 140.6 83 84.3
Medtr1g012980 Medicago truncatula HOM05D004589 ORTHO05D005848 5.7e-32 140.6 83 84.3
Psat6g028520 Pisum sativum HOM05D004589 ORTHO05D005848 5.7e-32 140.6 83 84.3
Sed0004204 Sechium edule HOM05D004589 ORTHO05D005848 5.7e-32 140.6 86 83.7
SGA_v2.0_scaffold85G26586 Striga asiatica HOM05D004589 ORTHO05D005848 7.4e-32 140.2 86 83.7
vmacro22576 Vaccinium macrocarpon HOM05D004589 ORTHO05D005848 7.4e-32 140.2 86 81.4
Ah.16g104820 Amaranthus hybridus HOM05D004589 ORTHO05D005848 9.7e-32 139.8 86 83.7
Os04g0502200 Oryza sativa ssp. japonica HOM05D004589 ORTHO05D005848 9.7e-32 139.8 84 84.5
Glyma.14G112200 Glycine max HOM05D004589 ORTHO05D005848 1.3e-31 139.4 83 83.1
Manes.16G126200 Manihot esculenta HOM05D004589 ORTHO05D005848 1.3e-31 139.4 86 84.9
TPR.G40835 Trifolium pratense HOM05D004589 ORTHO05D005848 1.3e-31 139.4 86 82.6
VMungo0647G1846 Vigna mungo HOM05D004589 ORTHO05D005848 1.3e-31 139.4 83 83.1
Lalb_Chr11g0075481 Lupinus albus HOM05D004589 ORTHO05D005848 1.7e-31 139.0 83 84.3
Phvul.001G047300 Phaseolus vulgaris HOM05D004589 ORTHO05D005848 1.7e-31 139.0 83 83.1
Potri.018G022500 Populus trichocarpa HOM05D004589 ORTHO05D005848 1.7e-31 139.0 86 82.6
EL10Ac2g04152 Beta vulgaris HOM05D004589 ORTHO05D005848 2.8e-31 138.3 86 82.6
Lj5g0022357 Lotus japonicus HOM05D004589 ORTHO05D005848 2.8e-31 138.3 86 83.7
arahy.Tifrunner.gnm1.ann1.PKKG09 Arachis hypogaea HOM05D004589 ORTHO05D005848 3.7e-31 137.9 83 83.1
ECA246G2532 Erigeron canadensis HOM05D004589 ORTHO05D005848 3.7e-31 137.9 81 85.2
Migut.E01823 Erythranthe guttata HOM05D004589 ORTHO05D005848 3.7e-31 137.9 82 84.1
HanXRQChr16g0511131 Helianthus annuus HOM05D004589 ORTHO05D005848 3.7e-31 137.9 81 85.2
CARHR202250 Cardamine hirsuta HOM05D004589 ORTHO05D005848 4.8e-31 137.5 86 80.2
Zm00001eb078140 Zea mays HOM05D004589 ORTHO05D005848 4.8e-31 137.5 83 83.1
Oeu056766.2 Olea europaea HOM05D004589 ORTHO05D005848 6.3e-31 137.1 86 82.6
unitig_32.g11112 Utricularia gibba HOM05D004589 ORTHO05D005848 8.2e-31 136.7 86 80.2
Aa31LG3G16090 Aethionema arabicum HOM05D004589 ORTHO05D005848 1.1e-30 136.3 86 77.9
AL6G21660 Arabidopsis lyrata HOM05D004589 ORTHO05D005848 1.1e-30 136.3 86 79.1
arahy.Tifrunner.gnm1.ann1.JQP3NY Arachis hypogaea HOM05D004589 ORTHO05D005848 1.1e-30 136.3 83 81.9
Carub.0006s0955 Capsella rubella HOM05D004589 ORTHO05D005848 1.1e-30 136.3 86 79.1
BcaC04g19264 Brassica carinata HOM05D004589 ORTHO05D005848 1.4e-30 136.0 86 79.1
A10p26640 Brassica napus HOM05D004589 ORTHO05D005848 1.4e-30 136.0 86 79.1
C09p65810 Brassica napus HOM05D004589 ORTHO05D005848 1.4e-30 136.0 86 79.1
BolC9t59402H Brassica oleracea HOM05D004589 ORTHO05D005848 1.4e-30 136.0 86 79.1
Potri.006G259500 Populus trichocarpa HOM05D004589 ORTHO05D005848 1.4e-30 136.0 86 81.4
CAN.G199.72 Capsicum annuum HOM05D004589 ORTHO05D005848 1.8e-30 135.6 81 81.5
Thhalv10012483m.g Eutrema salsugineum HOM05D004589 ORTHO05D005848 1.8e-30 135.6 86 77.9
Nn8g39722 Nelumbo nucifera HOM05D004589 ORTHO05D005848 1.8e-30 135.6 73 94.5
Nitab4.5_0002503g0050 Nicotiana tabacum HOM05D004589 ORTHO05D005848 1.8e-30 135.6 81 81.5
Nitab4.5_0003811g0060 Nicotiana tabacum HOM05D004589 ORTHO05D005848 1.8e-30 135.6 81 81.5
Solyc06g065840.3 Solanum lycopersicum HOM05D004589 ORTHO05D005848 1.8e-30 135.6 81 81.5
CSS0038938 Camellia sinensis var. sinensis HOM05D004589 ORTHO05D005848 2.4e-30 135.2 82 82.9
BraA10t44722Z Brassica rapa HOM05D004589 ORTHO05D005848 3.1e-30 134.8 86 77.9
Lsat_1_v5_gn_6_115440 Lactuca sativa HOM05D004589 ORTHO05D005848 3.1e-30 134.8 86 79.1
Peaxi162Scf00430g00220 Petunia axillaris HOM05D004589 ORTHO05D005848 3.1e-30 134.8 81 80.2
Sp6g32450 Schrenkiella parvula HOM05D004589 ORTHO05D005848 3.1e-30 134.8 86 77.9
Hund04463 Selenicereus undatus HOM05D004589 ORTHO05D005848 3.1e-30 134.8 86 82.6
Sopen06g024330 Solanum pennellii HOM05D004589 ORTHO05D005848 3.1e-30 134.8 81 80.2
THA.LOC104799036 Tarenaya hassleriana HOM05D004589 ORTHO05D005848 3.1e-30 134.8 86 80.2
AT5G11040 Arabidopsis thaliana HOM05D004589 ORTHO05D005848 4.1e-30 134.4 86 77.9
ECA248G0813 Erigeron canadensis HOM05D004589 ORTHO05D005848 1.6e-29 132.5 86 80.2
Lsat_1_v5_gn_1_43861 Lactuca sativa HOM05D004589 ORTHO05D005848 5.9e-29 130.6 81 80.2
HanXRQChr01g0030641 Helianthus annuus HOM05D004589 ORTHO05D005848 7.7e-29 130.2 86 76.7
arahy.Tifrunner.gnm1.ann1.3DY4JU Arachis hypogaea HOM05D004589 ORTHO05D005848 1.9e-27 125.6 80 77.5
AagrBONN_evm.TU.Sc2ySwM_368.2742 Anthoceros agrestis HOM05D004589 ORTHO05D005848 8.8e-25 116.7 83 71.1
SEGI_21363 Sequoiadendron giganteum HOM05D004589 ORTHO05D005848 2.6e-24 115.2 68 85.3
HPP92_024788 Vanilla planifolia HOM05D004589 ORTHO05D005848 1.7e-23 112.5 68 80.9
Mapoly0001s0490 Marchantia polymorpha HOM05D004589 ORTHO05D005848 2.2e-23 112.1 76 68.4
arahy.Tifrunner.gnm1.ann1.X695T9 Arachis hypogaea HOM05D004589 ORTHO05D005848 4.1e-22 107.8 68 77.9
Gohir.D06G102200 Gossypium hirsutum HOM05D004589 ORTHO05D005848 4.1e-22 107.8 81 72.8
Pp3c19_10170 Physcomitrium patens HOM05D004589 ORTHO05D005848 9.4e-19 96.7 74 63.5
Pp3c22_21520 Physcomitrium patens HOM05D004589 ORTHO05D005848 1.8e-17 92.4 74 60.8
SMO199G0047 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 4.0e-17 91.3 73 60.3
CBR_g36903 Chara braunii HOM05D004589 ORTHO05D005848 5.2e-17 90.9 76 57.9
SMO364G0672 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 3.4e-16 88.2 76 57.9
SMO361G0208 Selaginella moellendorffii HOM05D004589 ORTHO05D005848 3.4e-08 61.6 48 60.4


User provided reference genes

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