Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 2.0e-37 158.7 85 100.0
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 7.9e-34 146.7 85 90.6
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 5.1e-33 144.1 85 81.2
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 1.1e-32 142.9 84 90.5
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 1.1e-32 142.9 85 80.0
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 1.5e-32 142.5 84 86.9
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 1.5e-32 142.5 85 77.6
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 4.3e-32 141.0 84 85.7
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 9.6e-32 139.8 85 76.5
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 1.3e-31 139.4 84 78.6
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 1.6e-31 139.0 84 84.5
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 2.1e-31 138.7 84 86.9
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 2.1e-31 138.7 84 76.2
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 4.8e-31 137.5 84 84.5
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 4.8e-31 137.5 84 77.4
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 4.8e-31 137.5 84 77.4
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 4.8e-31 137.5 84 77.4
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 4.8e-31 137.5 84 82.1
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 4.8e-31 137.5 85 84.7
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 6.2e-31 137.1 85 75.3
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 8.1e-31 136.7 86 77.9
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 1.1e-30 136.3 85 75.3
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 1.1e-30 136.3 80 86.2
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 1.4e-30 136.0 85 74.1
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 1.8e-30 135.6 82 84.1
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 1.8e-30 135.6 82 84.1
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 4.0e-30 134.4 85 72.9
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 6.9e-30 133.7 82 82.9
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 6.9e-30 133.7 84 72.6
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 1.2e-29 132.9 85 72.9
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 1.2e-29 132.9 85 69.4
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 1.2e-29 132.9 82 82.9
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 2.6e-29 131.7 79 77.2
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 3.4e-29 131.3 94 68.1
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 3.4e-29 131.3 84 83.3
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 4.5e-29 131.0 85 71.8
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 4.5e-29 131.0 85 70.6
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 5.8e-29 130.6 79 75.9
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 7.6e-29 130.2 90 78.9
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 9.9e-29 129.8 85 71.8
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 1.7e-28 129.0 83 73.5
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.7e-28 129.0 85 70.6
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 2.2e-28 128.6 94 66.0
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 2.2e-28 128.6 86 70.9
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 4.9e-28 127.5 76 76.3
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 4.9e-28 127.5 86 68.6
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 4.9e-28 127.5 80 73.8
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 4.9e-28 127.5 80 73.8
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 4.9e-28 127.5 80 73.8
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 4.9e-28 127.5 80 73.8
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 6.4e-28 127.1 85 76.5
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 6.4e-28 127.1 79 73.4
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 8.4e-28 126.7 85 67.1
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 1.1e-27 126.3 89 68.5
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 1.1e-27 126.3 89 68.5
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 3.2e-27 124.8 86 68.6
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 3.2e-27 124.8 86 68.6
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 3.2e-27 124.8 85 77.6
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 5.5e-27 124.0 86 75.6
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 5.5e-27 124.0 85 68.2
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 9.3e-27 123.2 86 67.4
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 9.3e-27 123.2 85 76.5
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 9.3e-27 123.2 85 65.9
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.6e-26 122.5 77 68.8
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.1e-26 122.1 86 67.4
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.1e-26 122.1 86 67.4
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 2.1e-26 122.1 86 67.4
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 2.7e-26 121.7 89 64.0
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 2.7e-26 121.7 84 60.7
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 3.5e-26 121.3 86 74.4
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 3.5e-26 121.3 79 69.6
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 4.6e-26 120.9 83 67.5
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 6.0e-26 120.6 85 63.5
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 6.0e-26 120.6 86 69.8
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 1.0e-25 119.8 85 67.1
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 1.3e-25 119.4 77 67.5
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 1.8e-25 119.0 80 70.0
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.8e-25 119.0 85 67.1
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 1.8e-25 119.0 85 67.1
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 2.3e-25 118.6 84 63.1
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 3.0e-25 118.2 87 77.0
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 3.0e-25 118.2 85 67.1
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 3.0e-25 118.2 85 65.9
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 3.0e-25 118.2 84 66.7
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 3.0e-25 118.2 80 65.0
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 5.1e-25 117.5 72 83.3
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 6.7e-25 117.1 73 74.0
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 6.7e-25 117.1 76 67.1
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 1.9e-24 115.5 86 66.3
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 2.5e-24 115.2 76 65.8
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 2.5e-24 115.2 76 65.8
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 5.6e-24 114.0 84 61.9
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 5.6e-24 114.0 79 64.6
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 7.4e-24 113.6 85 62.4
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 7.4e-24 113.6 82 62.2
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 7.4e-24 113.6 70 78.6
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 7.4e-24 113.6 70 78.6
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 7.4e-24 113.6 92 62.0
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 1.6e-23 112.5 83 61.4
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 1.6e-23 112.5 98 66.3
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 2.1e-23 112.1 68 76.5
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 2.8e-23 111.7 79 63.3
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 2.8e-23 111.7 82 61.0
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 3.7e-23 111.3 87 62.1
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 1.1e-22 109.8 77 64.9
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.4e-22 109.4 68 72.1
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 1.4e-22 109.4 70 72.9
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 1.8e-22 109.0 84 59.5
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 2.4e-22 108.6 82 59.8
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 3.1e-22 108.2 93 58.1
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 4.0e-22 107.8 91 56.0
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 4.0e-22 107.8 87 59.8
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 5.3e-22 107.5 79 60.8
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 5.3e-22 107.5 68 69.1
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 6.9e-22 107.1 69 82.6
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 1.5e-21 105.9 82 57.3
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 1.5e-21 105.9 73 61.6
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 2.0e-21 105.5 63 76.2
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 2.6e-21 105.1 94 54.3
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 2.6e-21 105.1 68 75.0
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 2.6e-21 105.1 82 67.1
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 5.8e-21 104.0 68 70.6
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 1.0e-20 103.2 65 69.2
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 3.8e-20 101.3 77 59.7
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 8.4e-20 100.1 86 57.0
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 2.5e-19 98.6 86 54.7
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 5.5e-19 97.4 85 62.4
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 5.5e-19 97.4 72 63.9
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 9.3e-19 96.7 68 67.6
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 1.2e-18 96.3 111 45.0
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 4.6e-18 94.4 77 62.3
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 1.3e-17 92.8 71 63.4
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.8e-17 92.4 86 58.1
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 1.8e-17 92.4 85 58.8
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 3.0e-17 91.7 60 68.3
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 8.7e-17 90.1 87 51.7
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.1e-16 89.7 55 72.7
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 4.3e-16 87.8 53 71.7
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 5.7e-16 87.4 52 73.1
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 1.3e-15 86.3 51 78.4
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 2.8e-15 85.1 71 49.3
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 2.8e-15 85.1 54 66.7
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 3.7e-15 84.7 69 49.3
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 4.8e-15 84.3 52 73.1
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 8.2e-15 83.6 85 52.9
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 6.9e-14 80.5 44 81.8
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 1.2e-13 79.7 101 45.5
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 2.6e-13 78.6 68 58.8
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 5.0e-12 74.3 54 57.4
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 1.4e-11 72.8 46 65.2
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 2.5e-11 72.0 97 41.2
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 4.2e-11 71.2 79 41.8
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 1.2e-10 69.7 72 51.4
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 3.3e-08 61.6 59 52.5
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 3.3e-08 61.6 59 54.2
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 7.4e-08 60.5 48 58.3
MELO3C035440.2 Cucumis melo HOM05D004551 ORTHO05D005262 6.3e-07 57.4 120 36.7


User provided reference genes

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