Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12459 Nelumbo nucifera HOM05D004598 ORTHO05D005550 5.5e-133 477.6 239 100.0
TAR624G0541 Trochodendron aralioides HOM05D004598 ORTHO05D005550 7.0e-72 274.6 150 86.0
Rhsim11G0148800 Rhododendron simsii HOM05D004598 ORTHO05D005550 2.3e-70 269.6 150 85.3
Cc07_g11450 Coffea canephora HOM05D004598 ORTHO05D005550 3.0e-70 269.2 155 81.9
Aqoxy3G01530 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 6.6e-70 268.1 155 81.3
PSO675G4488 Papaver somniferum HOM05D004598 ORTHO05D005550 2.5e-69 266.2 154 79.9
Lj2A487T63 Lonicera japonica HOM05D004598 ORTHO05D005550 4.3e-69 265.4 154 81.2
Aqoxy3G00619 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 5.6e-69 265.0 150 82.7
Prupe.8G170900 Prunus persica HOM05D004598 ORTHO05D005550 5.6e-69 265.0 150 83.3
Atru.chr3.3248 Acer truncatum HOM05D004598 ORTHO05D005550 7.3e-69 264.6 152 80.9
Aqoxy3G01523 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 9.5e-69 264.2 150 82.7
Aqoxy6G02901 Aquilegia oxysepala HOM05D004598 ORTHO05D005550 1.2e-68 263.8 150 82.7
HanXRQChr03g0066861 Helianthus annuus HOM05D004598 ORTHO05D005550 3.6e-68 262.3 149 81.9
Actinidia02429 Actinidia chinensis HOM05D004598 ORTHO05D005550 6.2e-68 261.5 150 82.0
FvH4_2g15820 Fragaria vesca HOM05D004598 ORTHO05D005550 6.2e-68 261.5 149 81.2
CSS0012948 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.1e-67 260.8 155 79.4
FAN15G2177 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.1e-67 260.8 150 80.0
FAN27G3211 Fragaria x ananassa HOM05D004598 ORTHO05D005550 1.1e-67 260.8 150 80.0
QL11p052661 Quercus lobata HOM05D004598 ORTHO05D005550 1.1e-67 260.8 152 78.9
CSS0038935 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.8e-67 260.0 150 82.0
CSS0039662 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 1.8e-67 260.0 150 82.0
Solyc02g083260.3 Solanum lycopersicum HOM05D004598 ORTHO05D005550 1.8e-67 260.0 152 78.3
Sopen02g028050 Solanum pennellii HOM05D004598 ORTHO05D005550 1.8e-67 260.0 152 78.3
CSS0010665 Camellia sinensis var. sinensis HOM05D004598 ORTHO05D005550 2.3e-67 259.6 150 82.0
ECA240G3480 Erigeron canadensis HOM05D004598 ORTHO05D005550 2.3e-67 259.6 149 81.2
Hma1.2p1_0315F.1_g122700 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 3.1e-67 259.2 150 82.0
RcHm_v2.0_Chr6g0279191 Rosa chinensis HOM05D004598 ORTHO05D005550 3.1e-67 259.2 150 80.0
PGSC0003DMG400001580 Solanum tuberosum HOM05D004598 ORTHO05D005550 3.1e-67 259.2 152 77.6
Cfa010950 Carpinus fangiana HOM05D006110 ORTHO05D007774 4.0e-67 258.8 150 81.3
CiPaw.13G015900 Carya illinoinensis HOM05D004598 ORTHO05D005550 4.0e-67 258.8 150 80.0
Ciclev10001079m.g Citrus clementina HOM05D004598 ORTHO05D005550 4.0e-67 258.8 154 77.9
FAN20G2148 Fragaria x ananassa HOM05D004598 ORTHO05D005550 5.2e-67 258.5 152 78.9
SalBow6G7131 Salvia bowleyana HOM05D004598 ORTHO05D005550 5.2e-67 258.5 145 83.4
Hund05921 Selenicereus undatus HOM05D004598 ORTHO05D005550 5.2e-67 258.5 150 79.3
Glyma.08G159600 Glycine max HOM05D004598 ORTHO05D005550 6.8e-67 258.1 150 81.3
Rhsim11G0028900 Rhododendron simsii HOM05D004598 ORTHO05D005550 8.9e-67 257.7 154 80.5
MD05G1127200 Malus domestica HOM05D004598 ORTHO05D005550 1.5e-66 256.9 150 80.0
SalBow2G2153 Salvia bowleyana HOM05D004598 ORTHO05D005550 1.5e-66 256.9 145 82.1
MSTRG.2598 Avicennia marina HOM05D004598 ORTHO05D005550 2.0e-66 256.5 148 79.7
Migut.H02299 Erythranthe guttata HOM05D004598 ORTHO05D005550 2.0e-66 256.5 147 81.0
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.0e-66 256.5 159 74.2
Ah.03g134220 Amaranthus hybridus HOM05D004598 ORTHO05D005550 3.4e-66 255.8 160 75.0
EL10Ac6g13343 Beta vulgaris HOM05D004598 ORTHO05D005550 4.4e-66 255.4 160 75.0
Cpa.g.sc9.382 Carica papaya HOM05D004598 ORTHO05D005550 4.4e-66 255.4 150 81.3
Eucgr.H00040 Eucalyptus grandis HOM05D004598 ORTHO05D005550 4.4e-66 255.4 160 75.6
Lj3g0020284 Lotus japonicus HOM05D004598 ORTHO05D005550 4.4e-66 255.4 149 80.5
Phvul.005G043300 Phaseolus vulgaris HOM05D004598 ORTHO05D005550 7.5e-66 254.6 150 77.3
vmacro20477 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 7.5e-66 254.6 150 80.0
MBI19_g29897_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 1.3e-65 253.8 151 79.5
Manes.14G169500 Manihot esculenta HOM05D004598 ORTHO05D005550 1.7e-65 253.4 149 79.2
Peaxi162Scf00300g00120 Petunia axillaris HOM05D004598 ORTHO05D005550 1.7e-65 253.4 152 76.3
Lalb_Chr01g0007411 Lupinus albus HOM05D004598 ORTHO05D005550 2.9e-65 252.7 150 78.7
Hma1.2p1_0315F.1_g122690 Hydrangea macrophylla HOM05D004598 ORTHO05D005550 3.7e-65 252.3 157 78.3
arahy.Tifrunner.gnm1.ann1.B5R5MF Arachis hypogaea HOM05D004598 ORTHO05D005550 4.9e-65 251.9 150 78.7
arahy.Tifrunner.gnm1.ann1.K5F1ZR Arachis hypogaea HOM05D004598 ORTHO05D005550 4.9e-65 251.9 150 78.7
CAN.G890.18 Capsicum annuum HOM05D004598 ORTHO05D005550 4.9e-65 251.9 152 75.7
CARHR191400 Cardamine hirsuta HOM05D004598 ORTHO05D005550 4.9e-65 251.9 149 79.9
Ca_23979_v3 Cicer arietinum L. HOM05D004598 ORTHO05D005550 4.9e-65 251.9 149 77.9
COL.COLO4_05992 Corchorus olitorius HOM05D004598 ORTHO05D005550 4.9e-65 251.9 152 77.6
vmacro22733 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 4.9e-65 251.9 149 79.9
VMungo1080G1126 Vigna mungo HOM05D004598 ORTHO05D005550 4.9e-65 251.9 150 77.3
Sc16g0001780 Simmondsia chinensis HOM05D004598 ORTHO05D005550 6.4e-65 251.5 177 68.4
Duzib133G0026 Durio zibethinus HOM05D004598 ORTHO05D005550 1.1e-64 250.8 150 79.3
TWI18G0003 Tripterygium wilfordii HOM05D004598 ORTHO05D005550 2.4e-64 249.6 151 79.5
Aa31LG1G13300 Aethionema arabicum HOM05D004598 ORTHO05D005550 3.2e-64 249.2 153 77.1
TPR.G6064 Trifolium pratense HOM05D004598 ORTHO05D005550 3.2e-64 249.2 149 77.2
MBI02_g31690_MAGBIO Magnolia biondii HOM05D004598 ORTHO05D005550 4.1e-64 248.8 151 77.5
Sabra01G0022600 Salix brachista HOM05D004598 ORTHO05D005550 4.1e-64 248.8 149 76.5
MELO3C013319.2 Cucumis melo HOM05D004598 ORTHO05D005550 5.4e-64 248.4 152 78.9
arahy.Tifrunner.gnm1.ann1.BN9D0T Arachis hypogaea HOM05D004598 ORTHO05D005550 9.2e-64 247.7 152 76.3
ClCG02G003800 Citrullus lanatus HOM05D004598 ORTHO05D005550 9.2e-64 247.7 150 80.0
Potri.001G031500 Populus trichocarpa HOM05D004598 ORTHO05D005550 9.2e-64 247.7 149 76.5
Sp6g23050 Schrenkiella parvula HOM05D004598 ORTHO05D005550 9.2e-64 247.7 149 79.2
Thecc.04G114500 Theobroma cacao HOM05D004598 ORTHO05D005550 1.2e-63 247.3 152 77.0
AUR62026384 Chenopodium quinoa HOM05D004598 ORTHO05D005550 1.6e-63 246.9 164 68.9
PGR004G0790 Punica granatum HOM05D004598 ORTHO05D005550 2.0e-63 246.5 146 77.4
Psat6g012400 Pisum sativum HOM05D004598 ORTHO05D005550 2.7e-63 246.1 147 77.6
Gohir.A07G077700 Gossypium hirsutum HOM05D004598 ORTHO05D005550 3.5e-63 245.7 152 77.0
AUR62026210 Chenopodium quinoa HOM05D004598 ORTHO05D005550 4.6e-63 245.4 162 69.1
CsaV3_7G001350 Cucumis sativus L. HOM05D004598 ORTHO05D005550 4.6e-63 245.4 150 78.7
Gohir.D07G082500 Gossypium hirsutum HOM05D004598 ORTHO05D005550 6.0e-63 245.0 152 77.0
Medtr8g040610 Medicago truncatula HOM05D004598 ORTHO05D005550 6.0e-63 245.0 149 74.5
Gorai.001G088100 Gossypium raimondii HOM05D004598 ORTHO05D005550 7.8e-63 244.6 152 77.0
Carub.0006s1977 Capsella rubella HOM05D004598 ORTHO05D005550 3.0e-62 242.7 149 77.2
Sed0007699 Sechium edule HOM05D004598 ORTHO05D005550 3.0e-62 242.7 150 76.7
AL6G33110 Arabidopsis lyrata HOM05D004598 ORTHO05D005550 3.9e-62 242.3 149 76.5
FAN24G1674 Fragaria x ananassa HOM05D004598 ORTHO05D005550 6.6e-62 241.5 218 59.2
TPR.G8530 Trifolium pratense HOM05D004598 ORTHO05D005550 6.6e-62 241.5 153 73.9
AT5G22130 Arabidopsis thaliana HOM05D004598 ORTHO05D005550 8.6e-62 241.1 169 70.4
ATR0165G018 Amborella trichopoda HOM05D004598 ORTHO05D005550 1.5e-61 240.4 154 71.4
BcaC03g13863 Brassica carinata HOM05D004598 ORTHO05D005550 1.5e-61 240.4 149 76.5
Thhalv10013575m.g Eutrema salsugineum HOM05D004598 ORTHO05D005550 1.9e-61 240.0 149 76.5
BcaB05g22747 Brassica carinata HOM05D004598 ORTHO05D005550 2.5e-61 239.6 149 78.5
THA.LOC104799567 Tarenaya hassleriana HOM05D004598 ORTHO05D005550 3.3e-61 239.2 147 76.9
SHI34561 Sapria himalayana HOM05D004598 ORTHO05D005550 9.5e-61 237.7 152 73.0
unitig_736.g22586 Utricularia gibba HOM05D004598 ORTHO05D005550 1.2e-60 237.3 148 73.6
BraA02t05641Z Brassica rapa HOM05D004598 ORTHO05D005550 1.6e-60 236.9 149 75.8
C02p10690 Brassica napus HOM05D004598 ORTHO05D005550 2.1e-60 236.5 149 75.2
BolC2t07140H Brassica oleracea HOM05D004598 ORTHO05D005550 3.6e-60 235.7 149 75.8
arahy.Tifrunner.gnm1.ann1.PEW2A9 Arachis hypogaea HOM05D004598 ORTHO05D005550 8.1e-60 234.6 157 72.0
BNapus_Darmor_BZH_scaffold_38p00840 Brassica napus HOM05D004598 ORTHO05D005550 1.8e-59 233.4 147 75.5
HPP92_002259 Vanilla planifolia HOM05D004598 ORTHO05D005550 2.0e-58 229.9 151 69.5
SEGI_01084 Sequoiadendron giganteum HOM05D004598 ORTHO05D005550 3.4e-58 229.2 144 72.2
Medtr1g058230 Medicago truncatula HOM05D004598 ORTHO05D005550 6.4e-57 224.9 137 73.7
Dinv08542 Davidia involucrata HOM05D004598 ORTHO05D005550 1.1e-56 224.2 122 86.9
GSVIVG01017167001 Vitis vinifera HOM05D004598 ORTHO05D005550 3.2e-56 222.6 124 84.7
Os03g0670200 Oryza sativa ssp. japonica HOM05D004598 ORTHO05D005550 2.7e-55 219.5 144 69.4
HanXRQChr14g0454151 Helianthus annuus HOM05D004598 ORTHO05D005550 3.0e-54 216.1 122 82.8
MD10G1130600 Malus domestica HOM05D004598 ORTHO05D005550 6.6e-54 214.9 155 69.7
Dinv26897 Davidia involucrata HOM05D004598 ORTHO05D005550 5.2e-51 205.3 136 75.7
DCAR_027631 Daucus carota HOM05D004598 ORTHO05D005550 2.2e-49 199.9 122 74.6
Mapoly0079s0001 Marchantia polymorpha HOM05D004598 ORTHO05D005550 2.9e-49 199.5 146 61.0
Pp3c1_29840 Physcomitrium patens HOM05D004598 ORTHO05D005550 4.9e-49 198.7 146 59.6
CBR_g41686 Chara braunii HOM05D004598 ORTHO05D005550 8.7e-46 188.0 145 55.2
SMO118G0414 Selaginella moellendorffii HOM05D004598 ORTHO05D005550 3.3e-45 186.0 148 58.8
AagrBONN_evm.TU.Sc2ySwM_368.2499 Anthoceros agrestis HOM05D004598 ORTHO05D005550 8.1e-44 181.4 145 59.3
Haze_02994 Corylus avellana HOM05D006110 ORTHO05D007774 4.9e-41 172.2 153 57.5
Gohir.A11G320400 Gossypium hirsutum HOM05D004598 ORTHO05D005550 1.9e-40 170.2 151 60.3
BcaC07g41302 Brassica carinata HOM05D004598 ORTHO05D005550 9.3e-40 167.9 128 64.8
BolC8t51865H Brassica oleracea HOM05D004598 ORTHO05D005550 7.8e-39 164.9 140 60.7
Oeu046543.3 Olea europaea HOM05D004598 ORTHO05D005550 2.1e-36 156.8 121 68.6
Lsat_1_v5_gn_9_118221 Lactuca sativa HOM05D004598 ORTHO05D005550 4.8e-36 155.6 106 71.7
BolC9t58552H Brassica oleracea HOM05D004598 ORTHO05D005550 4.5e-34 149.1 174 51.7
Cre14.g616200 Chlamydomonas reinhardtii HOM05D004598 ORTHO05D005550 5.8e-34 148.7 144 47.9
vmacro20475 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 5.4e-32 142.1 94 73.4
vmacro22736 Vaccinium macrocarpon HOM05D004598 ORTHO05D005550 5.4e-32 142.1 90 75.6
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.8e-30 137.1 119 60.5
SGA_v2.0_scaffold108G30913 Striga asiatica HOM05D004598 ORTHO05D005550 1.1e-29 134.4 80 78.8
MELO3C010621.2 Cucumis melo HOM05D004598 ORTHO05D005550 4.0e-27 125.9 85 68.2
Actinidia00342 Actinidia chinensis HOM05D004598 ORTHO05D005550 9.9e-26 121.3 70 80.0
Cfa027243 Carpinus fangiana HOM05D004598 ORTHO05D005550 1.7e-25 120.6 173 41.0
MCO01G023 Micromonas commoda HOM05D004598 ORTHO05D005550 3.8e-25 119.4 140 43.6
CDE02G1977 Ceratophyllum demersum HOM05D004598 ORTHO05D005550 4.9e-25 119.0 77 74.0
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 2.1e-23 113.6 62 87.1
SGA_v2.0_scaffold195G40853 Striga asiatica HOM05D004598 ORTHO05D003143 4.5e-18 95.9 58 69.0
SHI43372 Sapria himalayana HOM05D004598 ORTHO05D005550 1.0e-14 84.7 62 61.3
PRCOL_00005536 Prasinoderma coloniale HOM05D004598 ORTHO05D005550 1.8e-14 84.0 138 37.0
SHI39035 Sapria himalayana HOM05D004598 ORTHO05D005550 8.2e-12 75.1 58 65.5
Migut.H02295 Erythranthe guttata HOM05D004598 ORTHO05D005550 5.3e-11 72.4 57 64.9
SHI47796 Sapria himalayana HOM05D004598 ORTHO05D005550 3.4e-10 69.7 50 66.0
Medtr6g051670 Medicago truncatula HOM05D004598 ORTHO05D005550 7.7e-10 68.6 48 60.4


User provided reference genes

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