Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 4.3e-248 860.9 452 100.0
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 8.3e-199 697.2 452 80.5
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 1.5e-195 686.4 452 78.3
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 5.6e-195 684.5 452 79.0
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 5.2e-193 677.9 452 78.1
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 5.2e-193 677.9 453 80.4
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 8.9e-193 677.2 453 79.0
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 2.2e-191 672.5 452 78.5
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 2.2e-191 672.5 452 77.9
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 4.9e-191 671.4 452 79.2
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 1.9e-190 669.5 452 78.5
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 6.0e-189 664.5 449 78.8
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 7.8e-189 664.1 458 76.6
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.0e-188 662.1 452 76.5
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 5.0e-188 661.4 453 77.5
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 1.5e-187 659.8 456 77.2
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 3.3e-187 658.7 453 77.7
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 4.3e-187 658.3 456 77.0
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.2e-186 656.8 453 77.9
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 1.6e-186 656.4 488 73.4
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 4.7e-186 654.8 452 76.5
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 1.8e-185 652.9 463 74.1
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 2.6e-184 649.0 453 76.6
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 4.4e-184 648.3 453 76.6
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 2.2e-183 646.0 453 75.7
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 2.2e-183 646.0 451 75.8
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 1.1e-182 643.7 452 76.1
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 1.2e-181 640.2 453 76.4
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 3.5e-181 638.6 452 75.4
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 1.0e-180 637.1 456 74.3
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 1.3e-180 636.7 461 74.8
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 5.1e-180 634.8 454 74.2
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 6.6e-180 634.4 415 80.7
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 1.1e-179 633.6 453 75.1
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 3.3e-179 632.1 451 75.8
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 2.1e-178 629.4 452 73.9
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 8.1e-178 627.5 452 74.3
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 4.0e-177 625.2 451 73.8
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 8.9e-177 624.0 451 75.2
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.5e-176 623.2 455 74.7
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 1.5e-176 623.2 453 72.4
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 1.7e-175 619.8 454 72.5
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 1.7e-175 619.8 449 74.2
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 2.2e-175 619.4 449 73.7
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 3.2e-174 615.5 449 72.4
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 3.2e-174 615.5 429 75.3
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 7.1e-174 614.4 454 71.4
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 1.6e-173 613.2 453 71.7
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 1.0e-172 610.5 453 70.9
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 1.5e-171 606.7 425 75.8
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 7.3e-171 604.4 452 72.6
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 9.6e-171 604.0 452 73.0
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 1.2e-170 603.6 453 71.7
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 2.8e-170 602.4 418 75.6
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 1.4e-169 600.1 452 71.5
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 1.8e-169 599.7 451 73.2
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 2.4e-169 599.4 452 72.8
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 4.0e-169 598.6 449 71.5
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 4.0e-169 598.6 453 72.4
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 5.2e-169 598.2 452 71.9
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 6.9e-169 597.8 452 72.3
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 6.9e-169 597.8 458 71.6
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.2e-168 597.0 453 71.5
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 1.5e-168 596.7 453 71.7
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 2.6e-168 595.9 454 70.7
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 3.4e-168 595.5 451 72.5
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 4.4e-168 595.1 452 71.5
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 4.4e-168 595.1 453 71.3
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 7.6e-168 594.3 452 71.7
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 1.7e-167 593.2 454 71.8
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 3.8e-167 592.0 452 71.5
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 1.0e-164 583.9 466 69.3
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 3.9e-164 582.0 454 68.9
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 8.7e-164 580.9 471 69.0
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 8.7e-164 580.9 463 69.1
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 1.1e-163 580.5 448 71.4
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 9.6e-163 577.4 414 73.4
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 1.3e-162 577.0 455 70.1
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 2.8e-162 575.9 453 69.8
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 8.1e-162 574.3 453 69.8
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 1.1e-161 573.9 394 76.6
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 1.8e-161 573.2 451 68.7
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 1.8e-161 573.2 456 69.7
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 1.5e-160 570.1 451 70.1
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 4.5e-160 568.5 451 69.8
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 5.8e-160 568.2 452 68.4
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 3.8e-159 565.5 457 68.5
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 4.9e-159 565.1 454 67.2
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 6.4e-159 564.7 466 67.0
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 1.4e-158 563.5 504 64.9
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 1.9e-158 563.1 452 68.4
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 3.2e-158 562.4 452 68.6
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 9.3e-158 560.8 452 68.4
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 1.2e-157 560.5 452 68.4
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 2.1e-157 559.7 452 68.6
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 2.7e-157 559.3 452 68.1
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 3.5e-157 558.9 451 68.7
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 4.6e-157 558.5 455 68.4
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 6.0e-157 558.1 457 68.1
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 7.9e-157 557.8 452 68.4
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 2.3e-156 556.2 452 67.5
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 6.7e-156 554.7 453 68.4
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 1.2e-152 543.9 482 63.7
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 1.5e-152 543.5 456 67.3
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 1.5e-152 543.5 452 66.2
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 1.5e-152 543.5 458 67.5
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 3.4e-152 542.3 456 67.1
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 7.6e-152 541.2 455 66.2
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 1.7e-151 540.0 452 65.7
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 1.5e-147 526.9 481 62.6
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 3.7e-146 522.3 431 67.5
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 2.4e-145 519.6 459 63.8
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 3.2e-142 509.2 414 66.9
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 1.9e-139 500.0 427 64.4
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 2.5e-139 499.6 465 59.4
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 6.9e-137 491.5 370 70.5
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 2.0e-136 490.0 371 71.2
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 2.6e-136 489.6 509 57.2
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 4.5e-136 488.8 414 64.7
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 6.3e-130 468.4 479 59.1
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 6.9e-129 464.9 427 62.8
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 1.0e-127 461.1 395 63.3
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 3.6e-125 452.6 476 55.0
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 2.0e-123 446.8 453 59.4
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 3.7e-122 442.6 343 68.8
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 1.1e-121 441.0 502 51.0
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 3.4e-120 436.0 342 69.0
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 8.8e-116 421.4 497 50.5
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 6.3e-114 415.2 454 52.9
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 2.0e-99 367.1 459 52.5
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 2.6e-99 366.7 242 73.6
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 3.7e-98 362.8 401 55.4
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 6.6e-95 352.1 489 47.2
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 9.8e-91 338.2 483 45.1
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 5.9e-88 328.9 350 57.1
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 5.4e-81 305.8 376 52.4
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 1.7e-79 300.8 519 39.5
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 3.9e-79 299.7 392 46.9
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 4.9e-58 229.6 174 67.8
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 1.4e-57 228.0 409 38.9
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 1.4e-57 228.0 128 83.6
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 6.0e-56 222.6 178 64.6
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 6.6e-55 219.2 254 57.9
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 4.3e-54 216.5 179 63.7
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 3.4e-51 206.8 172 62.2
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 2.9e-50 203.8 260 49.6
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 1.1e-49 201.8 389 36.8
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 3.3e-46 190.3 231 50.6
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 3.6e-45 186.8 268 42.2
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 3.3e-38 163.7 352 34.7
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 4.2e-33 146.7 141 54.6
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 7.1e-33 146.0 109 65.1
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 3.5e-32 143.7 131 64.1
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 2.0e-27 127.9 159 52.2
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 2.0e-27 127.9 91 68.1
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 2.2e-26 124.4 147 55.8
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 3.8e-26 123.6 141 54.6
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 6.7e-23 112.8 63 79.4
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 6.7e-23 112.8 168 50.6
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 8.7e-23 112.5 84 73.8
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 2.6e-19 100.9 57 78.9
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 5.0e-18 96.7 299 26.4
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 1.9e-17 94.7 99 50.5
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 2.7e-16 90.9 200 36.0
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 1.8e-15 88.2 54 77.8
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 8.5e-10 69.3 121 48.8
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 8.5e-10 69.3 109 37.6
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 1.4e-07 62.0 42 76.2
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 1.4e-07 62.0 48 68.8
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.0e-07 60.8 32 90.6
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 3.0e-07 60.8 44 70.5
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 5.1e-07 60.1 39 71.8


User provided reference genes

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