Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 7.6e-247 857.1 549 100.0
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 1.5e-162 577.0 537 63.7
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 3.2e-160 569.3 536 63.1
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 3.1e-131 473.0 539 56.8
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 2.2e-129 466.8 589 54.0
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 2.9e-129 466.5 550 55.3
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 1.6e-124 450.7 546 53.7
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 6.2e-124 448.7 548 52.7
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 5.8e-122 442.2 553 51.5
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 1.6e-119 434.1 543 52.7
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 1.5e-117 427.6 540 53.7
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 2.0e-114 417.2 545 48.3
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 8.5e-113 411.8 582 46.9
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 4.6e-111 406.0 548 48.2
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 1.0e-110 404.8 547 48.6
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 2.5e-109 400.2 572 45.5
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.3e-108 397.9 538 50.4
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 1.3e-108 397.9 587 47.9
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 2.8e-108 396.7 557 51.3
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 9.1e-107 391.7 545 49.2
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 2.6e-106 390.2 571 45.4
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 5.9e-106 389.0 584 45.7
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 1.7e-105 387.5 563 45.5
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 2.9e-105 386.7 586 50.9
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 3.8e-105 386.3 573 46.6
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.1e-104 384.8 538 53.7
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 2.5e-104 383.6 576 47.4
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 2.1e-103 380.6 507 55.6
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 2.7e-103 380.2 548 45.6
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 3.0e-102 376.7 566 43.6
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 8.8e-102 375.2 548 48.0
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 9.7e-101 371.7 412 64.1
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 2.8e-100 370.2 543 46.2
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 4.8e-100 369.4 545 48.8
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 2.4e-99 367.1 545 48.6
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 2.6e-98 363.6 544 51.5
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 5.9e-98 362.5 538 54.1
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 7.7e-98 362.1 547 52.7
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 1.3e-97 361.3 547 44.8
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 1.7e-97 360.9 541 50.5
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 5.0e-97 359.4 579 46.1
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 6.5e-97 359.0 413 52.5
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 1.9e-96 357.5 562 45.7
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 2.5e-96 357.1 559 50.1
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 7.2e-96 355.5 580 45.3
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 7.2e-96 355.5 569 44.6
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 2.3e-94 350.5 578 42.4
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 3.0e-94 350.1 543 50.3
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 5.2e-94 349.4 570 43.2
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 1.1e-93 348.2 543 47.5
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 2.0e-93 347.4 542 50.0
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 1.7e-92 344.4 586 47.6
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 2.8e-92 343.6 563 45.3
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 3.7e-92 343.2 577 47.7
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 3.7e-92 343.2 541 50.1
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 6.3e-92 342.4 544 44.9
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 6.3e-92 342.4 547 48.3
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 1.1e-91 341.7 549 45.5
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 1.4e-91 341.3 546 47.4
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 2.6e-90 337.0 581 46.6
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 1.3e-89 334.7 571 50.6
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 2.2e-89 334.0 588 46.8
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 1.1e-88 331.6 544 46.0
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 6.1e-87 325.9 546 52.4
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 8.0e-87 325.5 545 45.7
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.4e-86 324.7 542 48.2
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 3.4e-85 320.1 542 49.6
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 4.4e-85 319.7 574 43.9
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 4.4e-85 319.7 549 46.4
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 2.8e-84 317.0 536 45.0
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 4.8e-84 316.2 534 46.3
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 4.8e-84 316.2 542 42.1
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 5.4e-83 312.8 605 41.0
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 9.1e-83 312.0 570 46.0
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 1.2e-82 311.6 585 45.3
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 1.3e-81 308.1 545 43.1
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 1.7e-81 307.8 554 44.9
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 1.7e-81 307.8 559 46.9
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 2.2e-81 307.4 619 42.8
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 3.2e-80 303.5 555 44.7
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 5.5e-80 302.8 568 44.9
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.6e-79 301.2 453 51.9
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 3.6e-79 300.1 551 44.5
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 8.8e-78 295.4 544 48.2
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 8.8e-78 295.4 447 45.2
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 2.6e-77 293.9 539 45.6
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.7e-76 291.2 544 44.1
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 1.7e-76 291.2 551 44.5
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 2.2e-76 290.8 520 48.8
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 3.7e-76 290.0 591 42.6
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 3.1e-75 287.0 547 40.0
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 1.7e-73 281.2 540 40.0
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 2.5e-72 277.3 569 41.5
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 7.2e-72 275.8 564 41.3
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 1.2e-71 275.0 535 42.6
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 5.9e-66 256.1 558 41.0
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 2.5e-64 250.8 542 40.8
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 1.2e-63 248.4 562 40.7
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 5.2e-62 243.0 308 56.5
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 4.9e-60 236.5 543 44.2
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 1.1e-59 235.3 543 43.6
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 1.4e-59 235.0 543 44.4
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 1.4e-59 235.0 546 44.3
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.4e-59 233.0 442 41.4
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 5.4e-59 233.0 543 44.2
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 2.7e-58 230.7 308 54.5
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 2.7e-58 230.7 541 45.8
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 4.6e-58 229.9 535 38.7
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.5e-56 224.9 219 58.0
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 4.9e-52 209.9 534 32.4
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 1.4e-46 191.8 308 46.8
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 2.6e-45 187.6 546 38.3
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 2.7e-42 177.6 570 36.8
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 2.7e-42 177.6 369 42.0
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 6.0e-42 176.4 210 51.0
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 2.1e-39 167.9 615 35.1
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 1.7e-33 148.3 142 59.2
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 3.0e-33 147.5 200 43.5
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 1.9e-32 144.8 204 51.5
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 1.6e-31 141.7 598 28.8
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 4.8e-31 140.2 168 52.4
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 1.8e-30 138.3 583 36.0
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 3.8e-28 130.6 335 35.5
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 1.7e-25 121.7 112 56.2
AagrBONN_evm.TU.Sc2ySwM_344.5238 Anthoceros agrestis HOM05D005724 ORTHO05D006636 5.3e-22 110.2 474 33.1
Cfa025790 Carpinus fangiana HOM05D005724 ORTHO05D006636 2.0e-21 108.2 560 29.8
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.1e-19 102.4 105 53.3
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.1e-19 102.4 105 53.3
Nitab4.5_0005621g0090 Nicotiana tabacum HOM05D005724 ORTHO05D006636 4.2e-19 100.5 127 47.2
PSO339G2657 Papaver somniferum HOM05D005724 ORTHO05D006636 9.3e-19 99.4 176 43.8
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 4.0e-14 84.0 59 66.1
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 3.8e-12 77.4 54 64.8


User provided reference genes

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