Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 1.7e-216 755.7 402 100.0
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 2.2e-163 579.3 438 72.6
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 9.1e-157 557.4 434 70.7
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 3.5e-156 555.4 431 71.7
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 7.7e-156 554.3 431 71.5
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 1.5e-154 550.1 434 69.6
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 2.1e-153 546.2 449 67.9
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 3.6e-153 545.4 440 68.2
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 8.0e-153 544.3 438 66.9
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 1.8e-149 533.1 436 65.8
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 2.4e-149 532.7 438 66.2
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 1.6e-148 530.0 429 66.9
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 6.6e-147 524.6 433 66.7
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.3e-146 521.9 428 67.3
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 1.5e-143 513.5 441 64.4
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 3.2e-141 505.8 424 65.1
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 4.1e-141 505.4 435 63.7
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 1.6e-140 503.4 439 62.4
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 2.0e-140 503.1 440 62.3
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.7e-140 502.7 428 65.9
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 4.6e-140 501.9 439 64.0
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 5.9e-140 501.5 440 61.4
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 5.9e-140 501.5 433 63.3
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 1.3e-139 500.4 435 63.2
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 5.0e-139 498.4 436 62.4
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 8.6e-139 497.7 440 63.4
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 2.5e-138 496.1 430 63.7
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 1.6e-137 493.4 430 63.5
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 2.1e-137 493.0 436 63.8
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 2.8e-137 492.7 428 63.8
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 2.8e-137 492.7 435 61.4
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 3.6e-137 492.3 436 61.7
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 4.7e-137 491.9 436 62.4
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 4.7e-137 491.9 437 61.6
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 6.2e-137 491.5 423 64.3
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 6.2e-137 491.5 428 61.2
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 6.2e-137 491.5 436 63.5
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 1.0e-136 490.7 418 62.9
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.0e-136 490.7 436 62.2
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 1.0e-136 490.7 428 62.4
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 1.4e-136 490.3 424 64.2
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 2.3e-136 489.6 432 62.7
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 5.2e-136 488.4 397 65.5
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 1.5e-135 486.9 428 63.1
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 1.7e-134 483.4 428 62.9
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 6.4e-134 481.5 443 60.9
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 1.9e-133 479.9 428 62.1
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 2.4e-133 479.6 432 62.3
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 5.4e-133 478.4 436 62.4
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 5.4e-133 478.4 463 60.0
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 7.0e-133 478.0 436 62.2
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 7.0e-133 478.0 429 61.5
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 9.2e-133 477.6 429 61.5
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 2.7e-132 476.1 432 62.0
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 4.6e-132 475.3 435 61.4
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 6.0e-132 474.9 428 62.4
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 1.3e-131 473.8 435 61.1
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 2.3e-131 473.0 436 61.5
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 3.0e-131 472.6 435 60.9
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 3.9e-131 472.2 431 61.9
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 3.9e-131 472.2 436 58.9
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 5.0e-131 471.9 437 61.1
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 1.1e-130 470.7 437 61.1
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 1.5e-130 470.3 431 61.7
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 1.5e-130 470.3 435 60.7
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 1.5e-130 470.3 415 63.1
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 1.9e-130 469.9 435 59.1
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 3.3e-130 469.2 434 60.1
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 3.3e-130 469.2 431 61.7
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 4.3e-130 468.8 429 60.4
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 8.1e-129 464.5 427 59.7
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 2.3e-128 463.0 429 59.4
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 2.3e-128 463.0 444 58.1
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 6.8e-128 461.5 443 58.0
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 6.8e-128 461.5 432 57.9
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 2.6e-127 459.5 430 60.9
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 3.4e-127 459.1 445 58.9
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 5.8e-127 458.4 443 57.1
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 7.5e-127 458.0 434 60.8
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 9.8e-127 457.6 395 64.3
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 1.7e-126 456.8 430 60.2
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 4.9e-126 455.3 432 61.1
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 8.3e-126 454.5 427 59.3
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 8.3e-126 454.5 408 60.5
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 2.4e-125 453.0 433 58.9
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 5.4e-125 451.8 441 57.1
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 9.2e-125 451.1 431 58.7
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 1.6e-124 450.3 420 60.2
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 2.7e-124 449.5 428 59.6
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 6.0e-124 448.4 434 58.1
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 6.0e-124 448.4 443 57.6
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.0e-123 447.6 506 53.2
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 3.0e-123 446.0 417 63.8
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 3.9e-123 445.7 440 58.2
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 3.3e-122 442.6 434 58.3
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 9.5e-122 441.0 432 58.1
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 9.5e-122 441.0 421 57.5
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 6.2e-121 438.3 419 57.0
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 6.2e-121 438.3 421 60.8
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 6.2e-121 438.3 444 55.6
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 8.1e-121 438.0 442 55.7
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 1.1e-120 437.6 410 60.0
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 1.4e-120 437.2 444 58.3
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 2.3e-120 436.4 431 56.8
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 3.1e-120 436.0 440 56.4
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.0e-119 433.3 442 55.2
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 2.6e-119 433.0 418 57.7
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 3.8e-118 429.1 369 63.7
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 4.9e-118 428.7 437 56.1
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.9e-117 426.8 393 63.1
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.6e-116 423.7 431 56.4
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 6.0e-116 421.8 368 62.8
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 6.0e-116 421.8 442 56.6
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 7.8e-116 421.4 412 58.0
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 1.3e-115 420.6 433 55.9
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 8.6e-115 417.9 429 57.8
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 2.1e-113 413.3 438 53.4
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 7.8e-108 394.8 432 54.6
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 3.9e-107 392.5 385 58.4
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 1.9e-101 373.6 362 59.7
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 3.0e-99 366.3 267 74.5
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 2.8e-97 359.8 519 45.9
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 8.4e-86 321.6 434 47.9
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 1.8e-83 313.9 308 59.1
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 3.9e-83 312.8 428 46.7
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 3.9e-83 312.8 343 53.6
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 5.1e-83 312.4 251 65.3
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 1.6e-81 307.4 301 58.1
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.2e-76 291.2 426 42.3
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 5.7e-74 282.3 204 74.5
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 7.7e-71 271.9 421 41.1
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 3.2e-69 266.5 276 55.8
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.1e-61 241.5 381 44.6
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.1e-58 231.5 188 65.4
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.2e-57 227.3 161 75.2
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 6.3e-49 199.1 147 73.5
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 7.7e-47 192.2 327 42.8
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 1.1e-45 188.3 135 69.6
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 7.2e-45 185.7 177 59.3
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 3.0e-43 180.3 186 58.6
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 1.5e-42 177.9 242 46.7
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 3.2e-37 160.2 195 48.2
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 7.2e-37 159.1 120 70.0
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 8.6e-30 135.6 111 65.8
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 3.0e-27 127.1 110 58.2
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 8.3e-25 119.0 88 65.9
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.2e-20 105.1 113 50.4
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 2.1e-20 104.4 79 67.1
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 4.0e-19 100.1 126 46.8
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 5.0e-14 83.2 64 67.2
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 1.9e-13 81.3 76 56.6
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 1.4e-11 75.1 53 69.8
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 3.9e-06 57.0 38 65.8


User provided reference genes

Program Settings