Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 5.7e-217 757.3 381 100.0
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 1.8e-170 602.8 358 86.0
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 2.9e-168 595.5 358 84.1
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 7.3e-164 580.9 359 81.9
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 1.1e-162 577.0 358 82.7
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.4e-162 576.6 343 84.3
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 2.1e-158 562.8 358 81.0
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 1.0e-157 560.5 338 84.0
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 2.3e-157 559.3 358 80.7
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.5e-156 556.6 351 82.9
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 7.3e-156 554.3 338 83.1
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 1.6e-155 553.1 340 81.8
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 6.2e-155 551.2 336 82.4
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 6.2e-155 551.2 346 82.4
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 1.1e-154 550.4 338 82.0
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 1.2e-153 547.0 363 78.2
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 7.6e-153 544.3 339 81.7
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 2.2e-152 542.7 358 77.1
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 6.4e-152 541.2 339 81.1
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 6.4e-152 541.2 358 77.9
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 8.4e-152 540.8 349 77.9
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 1.1e-151 540.4 348 78.7
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 4.2e-151 538.5 358 76.8
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 1.2e-150 537.0 371 74.9
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 1.0e-149 533.9 336 80.1
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 1.3e-149 533.5 340 80.6
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 1.7e-149 533.1 345 78.3
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 5.1e-149 531.6 358 75.7
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 5.1e-149 531.6 358 76.3
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 6.6e-149 531.2 348 77.9
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 6.6e-149 531.2 341 78.6
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 8.7e-149 530.8 358 77.4
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 1.9e-148 529.6 341 78.3
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 3.3e-148 528.9 362 77.1
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 5.6e-148 528.1 346 78.6
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 7.3e-148 527.7 358 77.4
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 9.6e-148 527.3 348 78.7
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.8e-147 525.8 345 78.0
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 3.6e-147 525.4 346 78.3
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 8.1e-147 524.2 346 78.0
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 1.4e-146 523.5 362 76.5
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 1.4e-146 523.5 358 76.5
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.8e-146 523.1 345 78.0
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 4.0e-146 521.9 346 77.7
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 4.0e-146 521.9 357 79.0
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 9.9e-145 517.3 346 78.3
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 9.9e-145 517.3 345 77.1
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 1.3e-144 516.9 348 75.3
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.3e-144 516.9 337 78.0
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 2.9e-144 515.8 366 74.0
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 3.8e-144 515.4 352 77.8
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 4.9e-144 515.0 336 80.1
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 4.9e-144 515.0 336 78.3
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.1e-143 513.8 330 79.4
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 7.1e-143 511.1 351 78.1
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 2.1e-142 509.6 336 77.4
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 2.7e-142 509.2 358 74.3
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 4.6e-142 508.4 352 77.8
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 6.0e-142 508.1 330 79.1
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 6.0e-142 508.1 336 77.7
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 7.9e-142 507.7 335 77.9
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 2.3e-141 506.1 335 77.3
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 5.1e-141 505.0 335 78.5
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 1.1e-140 503.8 335 77.0
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 1.1e-140 503.8 336 77.1
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 1.3e-139 500.4 341 76.8
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 3.7e-139 498.8 355 74.6
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 4.8e-139 498.4 352 75.6
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 8.1e-139 497.7 346 75.1
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 1.4e-138 496.9 336 75.9
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.4e-138 496.9 311 82.3
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 1.8e-138 496.5 336 78.0
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 2.4e-138 496.1 339 75.2
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.0e-137 493.0 310 81.3
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 2.6e-137 492.7 335 75.8
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 2.5e-135 486.1 340 73.8
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 4.2e-135 485.3 337 75.1
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 2.1e-134 483.0 330 76.4
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 3.5e-134 482.3 342 71.6
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 4.6e-134 481.9 339 73.2
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 5.1e-133 478.4 339 73.2
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 6.7e-133 478.0 337 73.6
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.5e-132 476.9 341 72.1
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 1.9e-132 476.5 347 72.3
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 5.6e-132 474.9 339 71.7
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 9.6e-132 474.2 340 72.6
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 1.3e-131 473.8 335 73.7
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 4.8e-131 471.9 331 73.1
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 1.4e-130 470.3 337 73.6
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.4e-130 470.3 339 71.7
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 2.4e-130 469.5 338 70.7
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 4.0e-130 468.8 340 72.1
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 5.3e-130 468.4 351 71.5
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 6.9e-130 468.0 340 70.9
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 1.2e-129 467.2 313 75.4
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.2e-129 467.2 340 71.2
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 2.2e-128 463.0 336 70.8
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 2.2e-128 463.0 339 71.7
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 2.2e-128 463.0 344 70.6
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 6.5e-128 461.5 338 70.7
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 8.4e-128 461.1 331 71.9
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 1.1e-127 460.7 341 71.3
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 7.1e-127 458.0 318 75.2
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 3.5e-126 455.7 315 74.6
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 7.9e-126 454.5 336 69.6
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 1.0e-125 454.1 320 73.4
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 1.0e-125 454.1 342 69.6
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 1.0e-125 454.1 320 73.4
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 8.7e-125 451.1 342 68.1
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.9e-124 449.9 365 65.8
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 9.7e-124 447.6 336 70.2
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 2.2e-123 446.4 287 79.1
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 4.8e-123 445.3 315 73.7
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 1.1e-122 444.1 312 73.7
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 1.1e-122 444.1 312 73.7
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 1.1e-122 444.1 312 73.7
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 3.1e-122 442.6 371 65.2
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 2.9e-120 436.0 330 69.7
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 5.0e-120 435.3 314 71.7
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 2.5e-119 433.0 343 68.5
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 9.4e-119 431.0 316 70.9
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 7.9e-118 427.9 262 82.8
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 3.0e-117 426.0 315 70.8
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 2.4e-114 416.4 293 72.7
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 2.4e-114 416.4 293 72.7
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.4e-111 407.1 251 80.5
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.7e-110 402.9 337 62.9
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 3.6e-110 402.5 319 67.4
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 2.6e-108 396.4 258 76.4
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.5e-105 387.1 364 59.1
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 2.6e-105 386.3 256 75.4
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.6e-105 386.3 314 65.3
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 2.6e-105 386.3 331 66.5
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 3.5e-105 386.0 304 65.1
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 2.1e-102 376.7 295 64.4
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 8.0e-102 374.8 267 71.9
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.0e-101 374.4 281 68.3
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 1.4e-101 374.0 257 74.3
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 2.3e-101 373.2 369 58.0
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 4.1e-98 362.5 259 69.5
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.1e-95 354.4 267 68.5
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.5e-95 354.0 259 70.3
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 1.5e-92 344.0 235 74.9
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 2.0e-92 343.6 343 58.0
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.4e-84 316.2 203 76.4
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 1.4e-82 310.8 316 53.5
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.2e-76 291.2 157 91.1
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 2.0e-76 290.4 157 91.1
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 3.2e-74 283.1 150 92.7
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 3.9e-72 276.2 149 92.6
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.5e-71 274.2 215 64.7
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.3e-71 273.1 145 91.0
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 1.7e-64 250.8 261 55.9
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 3.9e-48 196.4 114 84.2
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 1.1e-39 168.3 131 64.9
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 5.8e-28 129.4 95 67.4
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.6e-25 119.8 95 62.1
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 7.4e-23 112.5 115 54.8
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 2.9e-19 100.5 59 84.7
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.9e-11 73.9 74 58.1
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 2.3e-08 64.3 56 50.0
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.5e-07 60.8 62 51.6
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 9.7e-07 58.9 30 93.3


User provided reference genes

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