Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g08712 Nelumbo nucifera HOM05D000166 ORTHO05D276742 1.7e-38 162.2 81 100.0
Nn4g25958 Nelumbo nucifera HOM05D000166 ORTHO05D003553 5.9e-31 137.1 80 87.5
TAR365G1111 Trochodendron aralioides HOM05D000041 ORTHO05D003553 2.2e-17 92.0 81 63.0
Aqoxy2G03068_Aqoxy2G03069 Aquilegia oxysepala HOM05D000166 ORTHO05D003553 3.7e-17 91.3 81 60.5
TAR636G2295 Trochodendron aralioides HOM05D000166 ORTHO05D003553 4.9e-17 90.9 81 63.0
GSVIVG01017779001 Vitis vinifera HOM05D000166 ORTHO05D003553 3.2e-16 88.2 81 60.5
Nn3g21359 Nelumbo nucifera HOM05D000166 ORTHO05D003553 3.5e-15 84.7 81 61.7
Cpa.g.sc16.136 Carica papaya HOM05D000166 ORTHO05D003553 1.7e-14 82.4 81 56.8
TWI09G0110 Tripterygium wilfordii HOM05D000166 ORTHO05D003553 3.0e-14 81.6 78 57.7
Thecc.04G280000 Theobroma cacao HOM05D000166 ORTHO05D003553 5.0e-14 80.9 77 61.0
TWI53G0479 Tripterygium wilfordii HOM05D000166 ORTHO05D003553 6.6e-14 80.5 81 56.8
QL06p008001 Quercus lobata HOM05D000166 ORTHO05D003553 8.6e-14 80.1 77 62.3
Prupe.1G139900 Prunus persica HOM05D000166 ORTHO05D003553 1.1e-13 79.7 80 56.2
Gohir.D09G241000 Gossypium hirsutum HOM05D000166 ORTHO05D003553 3.3e-13 78.2 80 57.5
Gorai.006G264400 Gossypium raimondii HOM05D000166 ORTHO05D003553 3.3e-13 78.2 80 57.5
Manes.15G014900 Manihot esculenta HOM05D000041 ORTHO05D003553 3.3e-13 78.2 81 55.6
CiPaw.01G151300 Carya illinoinensis HOM05D000166 ORTHO05D003553 4.3e-13 77.8 76 57.9
Eucgr.B01279 Eucalyptus grandis HOM05D000166 ORTHO05D003553 4.3e-13 77.8 80 55.0
Gohir.A09G240232 Gossypium hirsutum HOM05D000041 ORTHO05D003553 4.3e-13 77.8 80 57.5
COL.COLO4_13906 Corchorus olitorius HOM05D000041 ORTHO05D003553 5.6e-13 77.4 77 59.7
Thecc.10G047500 Theobroma cacao HOM05D000166 ORTHO05D003553 5.6e-13 77.4 81 55.6
CANSAT78G2197 Cannabis sativa HOM05D000166 ORTHO05D003553 1.2e-12 76.3 82 51.2
PSO170G2092 Papaver somniferum HOM05D000166 ORTHO05D003553 1.6e-12 75.9 78 53.8
PSO210G5774 Papaver somniferum HOM05D000166 ORTHO05D003553 1.6e-12 75.9 80 52.5
Ciclev10005161m.g Citrus clementina HOM05D000166 ORTHO05D003553 2.8e-12 75.1 78 53.8
Gohir.A10G162100 Gossypium hirsutum HOM05D000166 ORTHO05D003553 3.6e-12 74.7 78 55.1
Gohir.D10G168500 Gossypium hirsutum HOM05D000166 ORTHO05D003553 3.6e-12 74.7 78 55.1
Gorai.011G188000 Gossypium raimondii HOM05D000166 ORTHO05D003553 3.6e-12 74.7 78 55.1
Lj6A671T61 Lonicera japonica HOM05D000041 ORTHO05D003553 3.6e-12 74.7 80 52.5
MD16G1173100 Malus domestica HOM05D000041 ORTHO05D003553 4.7e-12 74.3 80 52.5
COL.COLO4_14956 Corchorus olitorius HOM05D000041 ORTHO05D003553 6.2e-12 73.9 82 53.7
Cc03_g02130 Coffea canephora HOM05D000166 ORTHO05D003553 8.1e-12 73.6 79 51.9
ATR0706G019 Amborella trichopoda HOM05D000041 ORTHO05D003553 1.8e-11 72.4 79 51.9
PGR031G2180 Punica granatum HOM05D000166 ORTHO05D003553 2.3e-11 72.0 82 57.3
Hma1.2p1_0698F.1_g205420 Hydrangea macrophylla HOM05D000166 ORTHO05D003553 4.0e-11 71.2 81 53.1
Hma1.2p1_2251F.1_g318120 Hydrangea macrophylla HOM05D000166 ORTHO05D003553 4.0e-11 71.2 81 53.1
Duzib052G1026 Durio zibethinus HOM05D000166 ORTHO05D003553 5.2e-11 70.9 76 55.3
Haze_01247 Corylus avellana HOM05D000166 ORTHO05D003553 6.8e-11 70.5 77 53.2
Migut.G00188 Erythranthe guttata HOM05D000041 ORTHO05D003553 6.8e-11 70.5 79 50.6
FvH4_4g17600 Fragaria vesca HOM05D000166 ORTHO05D003553 6.8e-11 70.5 81 51.9
FAN12G1397 Fragaria x ananassa HOM05D000166 ORTHO05D003553 6.8e-11 70.5 81 51.9
FAN12G3006 Fragaria x ananassa HOM05D000166 ORTHO05D003553 6.8e-11 70.5 81 51.9
FAN17G0188 Fragaria x ananassa HOM05D000166 ORTHO05D003553 1.2e-10 69.7 81 51.9
FAN22G0094 Fragaria x ananassa HOM05D000166 ORTHO05D003553 1.2e-10 69.7 81 51.9
Duzib151G1081 Durio zibethinus HOM05D000166 ORTHO05D003553 1.5e-10 69.3 76 55.3
FAN07G0431 Fragaria x ananassa HOM05D000166 ORTHO05D003553 2.0e-10 68.9 81 51.9
SHI00317 Sapria himalayana HOM05D000166 ORTHO05D003553 9.9e-10 66.6 80 47.5
MD13G1171400 Malus domestica HOM05D000166 ORTHO05D003553 1.3e-09 66.2 80 51.2
RcHm_v2.0_Chr4g0421511 Rosa chinensis HOM05D000166 ORTHO05D003553 2.2e-09 65.5 81 49.4
Actinidia00047 Actinidia chinensis HOM05D000166 ORTHO05D003553 2.9e-09 65.1 81 49.4
MSTRG.10080 Avicennia marina HOM05D000041 ORTHO05D003553 3.7e-09 64.7 81 45.7
vmacro15250 Vaccinium macrocarpon HOM05D000166 ORTHO05D003553 6.4e-09 63.9 78 51.3
Rhsim02G0012400 Rhododendron simsii HOM05D000166 ORTHO05D003553 8.3e-09 63.5 76 52.6
CSS0002824 Camellia sinensis var. sinensis HOM05D000166 ORTHO05D003553 1.1e-08 63.2 77 50.6
Oeu021114.1 Olea europaea HOM05D000166 ORTHO05D003553 1.9e-08 62.4 68 51.5
HPP92_000397 Vanilla planifolia HOM05D000166 ORTHO05D003553 1.9e-08 62.4 72 55.6
Duzib106G0718 Durio zibethinus HOM05D000166 ORTHO05D003553 4.1e-08 61.2 80 45.0
Os05g0371600 Oryza sativa ssp. japonica HOM05D000166 ORTHO05D003553 2.1e-07 58.9 81 45.7
AagrBONN_evm.TU.Sc2ySwM_117.2166 Anthoceros agrestis HOM05D000041 ORTHO05D003553 3.5e-07 58.2 77 45.5
PGSC0003DMG400022670 Solanum tuberosum HOM05D000041 ORTHO05D003553 7.8e-07 57.0 78 46.2
Zm00001eb285380 Zea mays HOM05D000166 ORTHO05D003553 7.8e-07 57.0 76 46.1
DCAR_027095 Daucus carota HOM05D000166 ORTHO05D003553 3.0e-06 55.1 75 44.0
Solyc01g067510.3 Solanum lycopersicum HOM05D000041 ORTHO05D003553 3.0e-06 55.1 80 45.0
Thecc.09G340500 Theobroma cacao HOM05D000166 ORTHO05D010965 3.0e-06 55.1 74 45.9
Sopen01g029440 Solanum pennellii HOM05D000041 ORTHO05D003553 3.9e-06 54.7 80 45.0
CAN.G580.2 Capsicum annuum HOM05D000041 ORTHO05D003553 8.6e-06 53.5 78 44.9
CDE12G0783 Ceratophyllum demersum HOM05D000166 ORTHO05D003553 8.6e-06 53.5 80 42.5
Nn3g16245 Nelumbo nucifera HOM05D000041 ORTHO05D003553 8.6e-06 53.5 80 42.5
Oeu037458.1 Olea europaea HOM05D000166 ORTHO05D003553 8.6e-06 53.5 68 45.6


User provided reference genes

Program Settings