Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 2.4e-110 402.1 198 100.0
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.5e-91 339.7 200 85.0
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 6.6e-84 314.3 197 76.6
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 6.6e-84 314.3 197 76.6
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 3.9e-76 288.5 197 68.5
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 5.1e-76 288.1 198 69.7
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 8.7e-76 287.3 197 69.0
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 1.9e-75 286.2 197 69.5
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 3.3e-75 285.4 198 70.2
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 4.3e-75 285.0 198 69.7
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 4.3e-75 285.0 197 68.0
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 7.3e-75 284.3 197 70.1
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 2.1e-74 282.7 197 70.6
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 2.1e-74 282.7 196 70.4
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 3.6e-74 282.0 197 67.0
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 6.2e-74 281.2 199 70.9
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 8.1e-74 280.8 198 66.7
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 8.1e-74 280.8 195 69.7
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.1e-73 280.4 197 67.5
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 1.4e-73 280.0 197 67.5
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 1.8e-73 279.6 191 72.8
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 2.4e-73 279.3 195 68.7
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 5.3e-73 278.1 197 67.0
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 5.3e-73 278.1 197 66.5
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 6.9e-73 277.7 197 69.0
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 6.9e-73 277.7 197 67.5
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 6.9e-73 277.7 196 68.9
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 9.0e-73 277.3 195 68.7
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 3.4e-72 275.4 198 68.7
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 5.8e-72 274.6 199 67.3
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 5.8e-72 274.6 197 67.5
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 5.8e-72 274.6 197 68.5
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 7.6e-72 274.2 197 68.0
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 1.3e-71 273.5 197 66.5
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 1.3e-71 273.5 197 67.5
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 1.7e-71 273.1 199 69.8
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 3.8e-71 271.9 200 66.0
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 3.8e-71 271.9 197 66.5
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 6.4e-71 271.2 196 66.3
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 1.4e-70 270.0 199 66.3
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 1.4e-70 270.0 197 65.5
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 1.4e-70 270.0 197 66.0
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 1.4e-70 270.0 197 65.5
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 1.9e-70 269.6 194 67.0
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 2.4e-70 269.2 197 67.5
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 2.4e-70 269.2 197 67.5
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 2.4e-70 269.2 197 67.5
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 5.5e-70 268.1 194 64.9
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 7.1e-70 267.7 198 65.7
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 2.7e-69 265.8 197 64.5
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 2.7e-69 265.8 194 64.4
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 2.7e-69 265.8 197 67.0
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 2.7e-69 265.8 197 64.0
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 2.7e-69 265.8 197 66.0
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 3.5e-69 265.4 193 64.2
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 3.5e-69 265.4 197 64.0
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 3.5e-69 265.4 195 65.1
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 6.0e-69 264.6 197 65.5
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 7.9e-69 264.2 198 65.2
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 7.9e-69 264.2 200 64.5
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 7.9e-69 264.2 200 64.5
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 7.9e-69 264.2 200 64.5
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.8e-68 263.1 197 64.0
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 1.8e-68 263.1 190 69.5
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 1.8e-68 263.1 193 64.2
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 1.8e-68 263.1 194 66.0
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 3.0e-68 262.3 193 63.2
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 3.0e-68 262.3 183 69.4
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 3.0e-68 262.3 197 64.0
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 3.0e-68 262.3 200 63.0
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 3.9e-68 261.9 199 64.3
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 3.9e-68 261.9 199 63.8
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 5.1e-68 261.5 197 63.5
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 5.1e-68 261.5 183 68.3
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 8.7e-68 260.8 197 64.5
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 8.7e-68 260.8 199 64.3
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 1.1e-67 260.4 192 65.1
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 2.5e-67 259.2 199 63.8
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 3.3e-67 258.8 195 65.1
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 3.3e-67 258.8 197 65.0
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 1.3e-66 256.9 199 63.3
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 2.1e-66 256.1 197 60.9
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 2.1e-66 256.1 197 62.4
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 2.8e-66 255.8 195 64.1
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 4.8e-66 255.0 199 62.8
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 4.8e-66 255.0 197 62.9
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 6.2e-66 254.6 202 62.4
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 1.4e-65 253.4 194 62.9
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 3.1e-65 252.3 183 65.6
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 5.3e-65 251.5 199 62.3
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 1.2e-64 250.4 193 61.1
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 2.9e-63 245.7 198 62.6
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 6.5e-63 244.6 213 60.1
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 1.1e-62 243.8 194 60.3
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 3.5e-61 238.8 205 59.5
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 1.5e-59 233.4 193 58.5
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 2.5e-59 232.6 186 61.8
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 9.6e-59 230.7 162 75.3
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 2.1e-58 229.6 201 58.7
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 1.3e-55 220.3 190 57.9
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 2.2e-55 219.5 191 56.0
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 5.0e-55 218.4 200 57.5
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 8.4e-55 217.6 261 46.4
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 7.2e-54 214.5 195 56.9
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 7.9e-53 211.1 195 53.8
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 5.1e-52 208.4 191 53.9
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 2.5e-51 206.1 190 54.7
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 4.3e-51 205.3 190 53.7
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 2.7e-45 186.0 163 57.7
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 1.4e-44 183.7 227 44.5
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 1.3e-42 177.2 200 49.5
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 5.3e-41 171.8 107 72.9
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 5.5e-38 161.8 191 46.1
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.8e-33 146.7 163 49.7
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.5e-30 136.3 128 55.5
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 6.1e-29 131.7 116 62.1
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 6.3e-26 121.7 202 37.1
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 6.3e-26 121.7 177 39.5
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 8.0e-21 104.8 116 49.1
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 1.3e-18 97.4 70 61.4
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 3.7e-18 95.9 126 47.6
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 1.4e-17 94.0 161 36.0
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 1.8e-17 93.6 48 81.2
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 1.2e-16 90.9 83 54.2
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 2.0e-16 90.1 61 73.8
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 8.5e-15 84.7 138 40.6
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 4.0e-12 75.9 38 81.6
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.2e-08 64.3 41 68.3
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 4.3e-06 55.8 44 61.4


User provided reference genes

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