Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g07512 Nelumbo nucifera HOM05D000094 ORTHO05D014788 1.1e-93 346.7 176 100.0
Nn2g12248 Nelumbo nucifera HOM05D000094 ORTHO05D014788 4.9e-54 214.9 138 81.2
Nn3g16361 Nelumbo nucifera HOM05D000139 ORTHO05D001437 3.1e-40 169.1 118 77.1
Nn5g28822 Nelumbo nucifera HOM05D000094 ORTHO05D001414 1.8e-32 143.3 126 62.7
Aqoxy6G00411 Aquilegia oxysepala HOM05D000094 ORTHO05D001414 2.7e-28 129.4 138 52.9
Dinv04770 Davidia involucrata HOM05D000094 ORTHO05D001414 1.2e-25 120.6 121 50.4
TWI79G0146 Tripterygium wilfordii HOM05D000094 ORTHO05D001414 1.1e-24 117.5 121 52.1
CDE06G1427 Ceratophyllum demersum HOM05D000094 ORTHO05D001414 3.1e-24 115.9 124 49.2
Sopen04g022890 Solanum pennellii HOM05D000094 ORTHO05D001414 5.2e-24 115.2 117 49.6
Solyc04g051510.1 Solanum lycopersicum HOM05D000094 ORTHO05D001414 6.9e-24 114.8 117 49.6
PGSC0003DMG400019698 Solanum tuberosum HOM05D000094 ORTHO05D001414 6.9e-24 114.8 117 49.6
Thecc.01G116200 Theobroma cacao HOM05D000094 ORTHO05D001414 6.9e-24 114.8 116 52.6
CSS0049068 Camellia sinensis var. sinensis HOM05D000094 ORTHO05D001414 1.5e-23 113.6 125 49.6
CDE07G2067 Ceratophyllum demersum HOM05D000094 ORTHO05D001414 1.5e-23 113.6 124 49.2
Ah.02g123710 Amaranthus hybridus HOM05D000094 ORTHO05D001414 2.0e-23 113.2 147 43.5
Gohir.A11G224700 Gossypium hirsutum HOM05D000094 ORTHO05D001414 2.6e-23 112.8 118 50.8
TAR625G0241 Trochodendron aralioides HOM05D000094 ORTHO05D001414 2.6e-23 112.8 87 67.8
EL10Ac6g15221 Beta vulgaris HOM05D000094 ORTHO05D001414 3.4e-23 112.5 118 50.0
Gohir.D11G227300 Gossypium hirsutum HOM05D000094 ORTHO05D001414 3.4e-23 112.5 118 50.0
Gorai.002G149600 Gossypium raimondii HOM05D000094 ORTHO05D001414 3.4e-23 112.5 118 50.0
Nitab4.5_0005374g0010 Nicotiana tabacum HOM05D000094 ORTHO05D001414 3.4e-23 112.5 114 49.1
PSO170G2374 Papaver somniferum HOM05D000094 ORTHO05D001414 3.4e-23 112.5 146 48.6
Actinidia01378 Actinidia chinensis HOM05D000094 ORTHO05D001414 5.8e-23 111.7 142 44.4
Duzib147G1056 Durio zibethinus HOM05D000094 ORTHO05D001414 7.6e-23 111.3 116 50.9
QL06p031490 Quercus lobata HOM05D000094 ORTHO05D001414 7.6e-23 111.3 116 52.6
MELO3C007457.2 Cucumis melo HOM05D000094 ORTHO05D001414 9.9e-23 110.9 114 51.8
MBI04_g08944_MAGBIO Magnolia biondii HOM05D000094 ORTHO05D001414 9.9e-23 110.9 121 52.9
Ciclev10024737m.g Citrus clementina HOM05D000094 ORTHO05D001414 1.3e-22 110.5 116 52.6
Gohir.A02G136300 Gossypium hirsutum HOM05D000094 ORTHO05D001414 1.3e-22 110.5 114 50.9
Nitab4.5_0000184g0090 Nicotiana tabacum HOM05D000094 ORTHO05D001414 1.7e-22 110.2 114 49.1
CsaV3_6G042190 Cucumis sativus L. HOM05D000094 ORTHO05D001414 2.9e-22 109.4 114 50.9
Gohir.D03G047100 Gossypium hirsutum HOM05D000094 ORTHO05D001414 2.9e-22 109.4 114 50.9
Dinv19462 Davidia involucrata HOM05D000094 ORTHO05D001414 4.9e-22 108.6 114 46.5
Lsat_1_v5_gn_2_67280 Lactuca sativa HOM05D000094 ORTHO05D001414 4.9e-22 108.6 114 50.0
Lsat_1_v5_gn_4_138061 Lactuca sativa HOM05D000094 ORTHO05D001414 4.9e-22 108.6 113 48.7
Duzib187G1120 Durio zibethinus HOM05D000094 ORTHO05D001414 6.4e-22 108.2 116 50.0
Gorai.003G048200 Gossypium raimondii HOM05D000094 ORTHO05D001414 6.4e-22 108.2 114 50.0
PSO700G0047 Papaver somniferum HOM05D000094 ORTHO05D001414 1.1e-21 107.5 146 47.3
Duzib264G0801 Durio zibethinus HOM05D000094 ORTHO05D001414 1.4e-21 107.1 116 51.7
VMungo1309G0487 Vigna mungo HOM05D000094 ORTHO05D001414 1.4e-21 107.1 117 51.3
Glyma.04G218300 Glycine max HOM05D000094 ORTHO05D001414 1.9e-21 106.7 118 50.0
MSTRG.15758 Avicennia marina HOM05D000094 ORTHO05D001414 3.2e-21 105.9 130 44.6
MBI01_g34164_MAGBIO Magnolia biondii HOM05D000094 ORTHO05D001414 5.4e-21 105.1 117 50.4
Ah.03g140050 Amaranthus hybridus HOM05D000094 ORTHO05D001414 7.1e-21 104.8 157 41.4
Sc07g0001590 Simmondsia chinensis HOM05D000094 ORTHO05D001414 7.1e-21 104.8 118 48.3
Atru.chr4.748 Acer truncatum HOM05D000094 ORTHO05D001414 1.6e-20 103.6 128 46.1
Haze_25077 Corylus avellana HOM05D000094 ORTHO05D001414 1.6e-20 103.6 126 47.6
HanXRQChr14g0446031 Helianthus annuus HOM05D000094 ORTHO05D001414 1.6e-20 103.6 122 47.5
Cfa002779 Carpinus fangiana HOM05D000094 ORTHO05D001414 2.7e-20 102.8 117 48.7
PSO675G7450 Papaver somniferum HOM05D000094 ORTHO05D001414 2.7e-20 102.8 115 52.2
Lj4P862T5 Lonicera japonica HOM05D000094 ORTHO05D001414 4.6e-20 102.1 114 49.1
Manes.13G086700 Manihot esculenta HOM05D000094 ORTHO05D001414 4.6e-20 102.1 117 48.7
TAR381G0723 Trochodendron aralioides HOM05D000094 ORTHO05D001414 4.6e-20 102.1 83 62.7
CDE02G3463 Ceratophyllum demersum HOM05D000094 ORTHO05D001414 7.8e-20 101.3 117 48.7
PSO541G4361 Papaver somniferum HOM05D000094 ORTHO05D001414 7.8e-20 101.3 132 47.7
Sabra07G0065700 Salix brachista HOM05D000094 ORTHO05D001414 7.8e-20 101.3 116 49.1
THA.LOC104807729 Tarenaya hassleriana HOM05D000094 ORTHO05D001414 1.0e-19 100.9 125 46.4
BcaB03g12286 Brassica carinata HOM05D000094 ORTHO05D001414 5.1e-19 98.6 119 47.9
BraA08t34315Z Brassica rapa HOM05D000094 ORTHO05D001414 6.6e-19 98.2 123 48.8
Carub.0007s0132 Capsella rubella HOM05D000094 ORTHO05D001414 6.6e-19 98.2 128 45.3
Prupe.6G168100 Prunus persica HOM05D000094 ORTHO05D001414 6.6e-19 98.2 116 43.1
THA.LOC104824835 Tarenaya hassleriana HOM05D000094 ORTHO05D001414 6.6e-19 98.2 125 46.4
A08p23580 Brassica napus HOM05D000094 ORTHO05D001414 8.7e-19 97.8 123 48.8
BolC3t20040H Brassica oleracea HOM05D000094 ORTHO05D001414 8.7e-19 97.8 123 48.0
CANSAT01G1663 Cannabis sativa HOM05D000094 ORTHO05D001414 8.7e-19 97.8 117 43.6
Cpa.g.sc72.20 Carica papaya HOM05D000094 ORTHO05D001414 8.7e-19 97.8 116 44.0
AL7G11420 Arabidopsis lyrata HOM05D000094 ORTHO05D001414 1.1e-18 97.4 128 44.5
BcaC01g00289 Brassica carinata HOM05D000094 ORTHO05D001414 1.1e-18 97.4 123 48.0
Glyma.06G147600 Glycine max HOM05D000094 ORTHO05D001414 1.1e-18 97.4 120 47.5
C03p77850 Brassica napus HOM05D000094 ORTHO05D001414 1.5e-18 97.1 123 48.0
CiPaw.03G132300 Carya illinoinensis HOM05D000094 ORTHO05D001414 1.5e-18 97.1 124 41.9
ATR1120G023 Amborella trichopoda HOM05D000094 ORTHO05D001414 2.5e-18 96.3 96 52.1
AT4G39400 Arabidopsis thaliana HOM05D000094 ORTHO05D001414 2.5e-18 96.3 128 44.5
RcHm_v2.0_Chr2g0117851 Rosa chinensis HOM05D000094 ORTHO05D001414 3.3e-18 95.9 115 42.6
Aa31LG6G15880 Aethionema arabicum HOM05D000094 ORTHO05D001414 4.3e-18 95.5 127 44.1
CARHR247310 Cardamine hirsuta HOM05D000094 ORTHO05D001414 4.3e-18 95.5 128 44.5
Eucgr.I00303 Eucalyptus grandis HOM05D000094 ORTHO05D001414 5.6e-18 95.1 124 42.7
HanXRQChr15g0471531 Helianthus annuus HOM05D000094 ORTHO05D001414 5.6e-18 95.1 116 46.6
HanXRQChr03g0078841 Helianthus annuus HOM05D000132 ORTHO05D000058 7.3e-18 94.7 117 46.2
SHI21982 Sapria himalayana HOM05D000094 ORTHO05D001414 2.1e-17 93.2 117 47.0
Lj2C568T3 Lonicera japonica HOM05D000094 ORTHO05D001414 2.8e-17 92.8 113 43.4
SGA_v2.0_scaffold51G18761 Striga asiatica HOM05D000094 ORTHO05D001414 3.6e-17 92.4 118 43.2
CAN.G860.7 Capsicum annuum HOM05D000094 ORTHO05D001414 4.8e-17 92.0 102 45.1
AUR62012211 Chenopodium quinoa HOM05D000094 ORTHO05D001414 4.8e-17 92.0 118 41.5
AUR62022844 Chenopodium quinoa HOM05D000094 ORTHO05D001414 4.8e-17 92.0 129 39.5
BolC7t46731H Brassica oleracea HOM05D000094 ORTHO05D001414 6.2e-17 91.7 128 43.8
Thhalv10024249m.g Eutrema salsugineum HOM05D000094 ORTHO05D001414 6.2e-17 91.7 119 45.4
Actinidia04637 Actinidia chinensis HOM05D000094 ORTHO05D001414 8.1e-17 91.3 101 44.6
C01p00510 Brassica napus HOM05D000094 ORTHO05D001414 8.1e-17 91.3 132 40.9
Medtr3g095100 Medicago truncatula HOM05D000094 ORTHO05D001414 1.8e-16 90.1 115 47.0
Lalb_Chr11g0068131 Lupinus albus HOM05D000094 ORTHO05D001414 3.1e-16 89.4 131 41.2
A06p48520 Brassica napus HOM05D000094 ORTHO05D001414 4.0e-16 89.0 128 43.0
BraA06t27722Z Brassica rapa HOM05D000094 ORTHO05D001414 4.0e-16 89.0 128 43.0
Lj1g0027179 Lotus japonicus HOM05D000094 ORTHO05D001414 5.3e-16 88.6 116 44.0
Ca_16902_v3 Cicer arietinum L. HOM05D000094 ORTHO05D001414 6.9e-16 88.2 117 44.4
BcaNung01262 Brassica carinata HOM05D000094 ORTHO05D001414 9.0e-16 87.8 119 42.9
BolC1t00054H Brassica oleracea HOM05D000094 ORTHO05D001414 9.0e-16 87.8 119 42.9
Gohir.D11G057600 Gossypium hirsutum HOM05D000094 ORTHO05D001414 9.0e-16 87.8 88 52.3
Sed0023250 Sechium edule HOM05D000094 ORTHO05D001414 9.0e-16 87.8 81 54.3
ClCG01G015910 Citrullus lanatus HOM05D000094 ORTHO05D001414 1.5e-15 87.0 88 51.1
Gorai.007G062800 Gossypium raimondii HOM05D000094 ORTHO05D001414 1.5e-15 87.0 116 44.8
Sed0019475 Sechium edule HOM05D000094 ORTHO05D001414 1.5e-15 87.0 101 46.5
A01p00360 Brassica napus HOM05D000094 ORTHO05D001414 2.0e-15 86.7 119 42.9
BraA01t00044Z Brassica rapa HOM05D000094 ORTHO05D001414 2.0e-15 86.7 119 42.9
MD01G1014200 Malus domestica HOM05D000094 ORTHO05D001414 2.0e-15 86.7 118 42.4
DCAR_001384 Daucus carota HOM05D000094 ORTHO05D001414 5.8e-15 85.1 108 44.4
Gohir.A11G054100 Gossypium hirsutum HOM05D000094 ORTHO05D001414 5.8e-15 85.1 84 52.4
Ah.16g103160 Amaranthus hybridus HOM05D000094 ORTHO05D001414 7.6e-15 84.7 118 41.5
MD15G1336800 Malus domestica HOM05D000094 ORTHO05D001414 7.6e-15 84.7 118 42.4
Lalb_Chr23g0272401 Lupinus albus HOM05D000094 ORTHO05D001414 9.9e-15 84.3 119 42.0
Manes.12G144800 Manihot esculenta HOM05D000094 ORTHO05D001414 9.9e-15 84.3 82 53.7
Peaxi162Scf00025g00342 Petunia axillaris HOM05D000094 ORTHO05D001414 9.9e-15 84.3 129 40.3
Rhsim08G0005000 Rhododendron simsii HOM05D000094 ORTHO05D001414 9.9e-15 84.3 114 40.4
GSVIVG01022261001 Vitis vinifera HOM05D000094 ORTHO05D001414 1.7e-14 83.6 88 44.3
Migut.L00060 Erythranthe guttata HOM05D000094 ORTHO05D001414 8.4e-14 81.3 123 42.3
BcaNung02339 Brassica carinata HOM05D000094 ORTHO05D001414 1.4e-13 80.5 110 44.5
C07p63210 Brassica napus HOM05D000094 ORTHO05D001414 1.4e-13 80.5 110 44.5
Potri.007G078100 Populus trichocarpa HOM05D000094 ORTHO05D001414 1.9e-13 80.1 86 48.8
Potri.005G086500 Populus trichocarpa HOM05D000094 ORTHO05D001414 2.4e-13 79.7 86 48.8
HPP92_022937 Vanilla planifolia HOM05D000094 ORTHO05D001414 5.4e-13 78.6 120 38.3
HPP92_022947 Vanilla planifolia HOM05D000094 ORTHO05D001414 5.4e-13 78.6 120 38.3
HPP92_008675 Vanilla planifolia HOM05D000094 ORTHO05D001414 3.5e-12 75.9 116 43.1
EL10Ac2g04792 Beta vulgaris HOM05D000094 ORTHO05D001414 6.0e-12 75.1 118 37.3
TPR.G22675 Trifolium pratense HOM05D000094 ORTHO05D001414 1.0e-11 74.3 105 43.8
PGR004G2819 Punica granatum HOM05D000094 ORTHO05D001414 1.3e-11 73.9 83 44.6
Cc07_g16580 Coffea canephora HOM05D000094 ORTHO05D001414 2.3e-11 73.2 89 42.7
HPP92_008688 Vanilla planifolia HOM05D000094 ORTHO05D001414 2.3e-11 73.2 116 42.2
Oeu028358.1 Olea europaea HOM05D000094 ORTHO05D001414 3.0e-11 72.8 111 36.0
Sp7g36460 Schrenkiella parvula HOM05D000094 ORTHO05D001414 8.7e-11 71.2 72 51.4
SGA_v2.0_scaffold2G01278 Striga asiatica HOM05D000094 ORTHO05D001414 8.7e-11 71.2 85 41.2
ATR0807G177 Amborella trichopoda HOM05D014279 ORTHO05D014788 1.5e-10 70.5 94 46.8
FAN28G0757 Fragaria x ananassa HOM05D000094 ORTHO05D001414 1.9e-10 70.1 83 39.8
MSTRG.23304 Avicennia marina HOM05D000094 ORTHO05D001414 4.3e-10 68.9 119 36.1
FvH4_1g23130 Fragaria vesca HOM05D000094 ORTHO05D001414 4.3e-10 68.9 84 39.3
FAN19G2980 Fragaria x ananassa HOM05D000094 ORTHO05D001414 4.3e-10 68.9 84 39.3
Os01g0718300 Oryza sativa ssp. japonica HOM05D000094 ORTHO05D001414 5.6e-10 68.6 126 33.3
SalBow6G0454 Salvia bowleyana HOM05D000094 ORTHO05D001414 5.6e-10 68.6 127 33.1
BcaNung05431 Brassica carinata HOM05D000094 ORTHO05D001414 7.4e-10 68.2 110 37.3
CAN.G48.45 Capsicum annuum HOM05D000094 ORTHO05D014788 7.4e-10 68.2 94 42.6
FAN23G1529 Fragaria x ananassa HOM05D000094 ORTHO05D001414 1.3e-09 67.4 83 38.6
FAN26G1281 Fragaria x ananassa HOM05D000094 ORTHO05D001414 1.3e-09 67.4 83 38.6
ECA238G0770 Erigeron canadensis HOM05D000094 ORTHO05D001414 1.6e-09 67.0 92 45.7
AUR62017957 Chenopodium quinoa HOM05D000094 ORTHO05D001414 4.8e-09 65.5 122 36.1
Zm00001eb361520 Zea mays HOM05D000094 ORTHO05D001414 8.1e-09 64.7 115 34.8
MSTRG.2522 Avicennia marina HOM05D000094 ORTHO05D001414 3.1e-08 62.8 81 39.5
Zm00001eb154730 Zea mays HOM05D000094 ORTHO05D001414 3.1e-08 62.8 115 33.0
Migut.H02451 Erythranthe guttata HOM05D000094 ORTHO05D001414 9.9e-07 57.8 108 33.3
AUR62003647 Chenopodium quinoa HOM05D000094 ORTHO05D001414 3.8e-06 55.8 158 29.7
Atru.chr2.3907 Acer truncatum HOM05D000094 ORTHO05D001414 4.9e-06 55.5 115 36.5
SEGI_05258 Sequoiadendron giganteum HOM05D000094 ORTHO05D001414 6.4e-06 55.1 103 38.8


User provided reference genes

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