Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.6e-292 1006.9 517 100.0
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.4e-242 842.8 550 82.7
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 1.2e-188 663.7 549 66.5
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 3.0e-176 622.5 541 64.3
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.7e-171 606.7 437 77.6
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 8.4e-171 604.4 547 60.7
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 1.9e-170 603.2 536 62.3
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 1.3e-168 597.0 583 57.6
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 5.1e-168 595.1 534 61.8
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 1.6e-166 590.1 542 61.1
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 1.4e-165 587.0 536 61.9
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 1.4e-165 587.0 572 59.4
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 3.1e-165 585.9 533 61.4
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 6.9e-165 584.7 529 61.1
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.9e-163 579.3 526 64.4
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 3.5e-161 572.4 536 60.4
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 3.0e-160 569.3 512 61.9
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 1.9e-159 566.6 534 59.2
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 1.9e-159 566.6 528 60.2
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 2.5e-159 566.2 525 61.3
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 3.3e-159 565.8 516 59.9
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 3.3e-159 565.8 508 61.4
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 1.3e-158 563.9 529 59.7
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 2.1e-158 563.1 513 60.6
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 2.1e-158 563.1 513 60.6
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 2.1e-158 563.1 534 60.3
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 6.2e-158 561.6 534 60.1
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 8.1e-158 561.2 516 58.3
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 1.1e-157 560.8 532 60.3
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 1.1e-157 560.8 525 60.4
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 2.4e-157 559.7 542 59.4
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 5.3e-157 558.5 536 57.5
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 9.0e-157 557.8 526 59.1
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 2.6e-156 556.2 505 59.4
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 3.4e-156 555.8 468 62.4
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 7.6e-156 554.7 523 59.5
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 1.3e-155 553.9 537 58.7
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 2.2e-155 553.1 546 57.1
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 2.2e-155 553.1 538 56.9
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 3.8e-155 552.4 514 59.3
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 4.9e-155 552.0 520 56.7
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 8.4e-155 551.2 521 58.9
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 1.1e-154 550.8 556 56.5
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 1.9e-154 550.1 522 58.0
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 2.4e-154 549.7 506 60.3
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 3.2e-154 549.3 512 60.5
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 5.5e-154 548.5 535 58.3
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 7.1e-154 548.1 542 58.1
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 9.3e-154 547.7 427 68.6
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 1.2e-153 547.4 510 58.4
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 2.7e-153 546.2 502 60.2
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 7.9e-153 544.7 520 56.5
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 3.0e-152 542.7 515 59.2
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 5.1e-152 542.0 514 60.3
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 7.4e-151 538.1 438 66.7
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 7.4e-151 538.1 549 55.7
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 3.1e-149 532.7 468 61.8
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 5.3e-149 531.9 494 58.7
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 1.2e-148 530.8 465 62.4
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 1.2e-148 530.8 569 54.8
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 1.5e-148 530.4 546 54.9
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 3.4e-148 529.3 544 55.3
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 2.9e-147 526.2 504 59.5
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 8.4e-147 524.6 513 56.3
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 8.4e-147 524.6 514 56.6
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 2.5e-146 523.1 552 54.9
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 9.3e-146 521.2 511 56.9
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 3.5e-145 519.2 505 58.0
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 1.8e-144 516.9 545 53.6
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 2.3e-144 516.5 507 56.2
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 5.1e-144 515.4 528 55.7
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 5.7e-143 511.9 468 60.9
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.7e-143 511.9 332 81.9
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 4.1e-141 505.8 451 60.3
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 4.1e-141 505.8 520 56.7
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 9.0e-141 504.6 558 52.7
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 1.1e-138 497.7 405 64.4
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 7.9e-137 491.5 544 53.1
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 3.0e-136 489.6 544 53.1
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 5.1e-136 488.8 561 52.6
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 1.5e-135 487.3 488 55.9
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 4.8e-134 482.3 551 52.5
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.1e-133 481.1 469 58.8
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 1.0e-131 474.6 506 53.4
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 1.7e-131 473.8 515 52.6
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 2.9e-131 473.0 513 53.0
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 3.8e-131 472.6 515 52.6
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 3.2e-130 469.5 513 52.6
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 4.2e-130 469.2 549 51.2
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 1.6e-129 467.2 510 52.0
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 2.1e-129 466.8 527 52.9
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 6.7e-128 461.8 501 51.3
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 6.9e-125 451.8 454 57.5
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 1.5e-124 450.7 439 57.9
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 2.6e-119 433.3 404 59.4
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 1.6e-108 397.5 524 46.2
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 3.2e-106 389.8 486 49.4
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 3.0e-104 383.3 381 57.5
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 1.4e-101 374.4 572 41.4
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.5e-99 365.5 231 81.0
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 1.4e-93 347.8 527 42.7
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 1.2e-92 344.7 525 44.0
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 3.5e-92 343.2 452 49.1
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 3.6e-89 333.2 263 65.8
MBI11_g46067_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 6.8e-88 328.9 320 60.6
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.5e-87 327.8 225 76.9
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 4.3e-82 309.7 389 48.3
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 2.6e-79 300.4 250 62.8
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.0e-75 288.5 194 76.8
MBI11_g46351_MAGBIO Magnolia biondii HOM05D005390 ORTHO05D007086 1.9e-69 267.7 283 58.0
VMungo1309G0829 Vigna mungo HOM05D005390 ORTHO05D007086 1.2e-68 265.0 271 57.6
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.9e-66 257.7 200 69.5
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 1.5e-63 248.1 213 62.9
CDE06G0744 Ceratophyllum demersum HOM05D005390 ORTHO05D007086 3.4e-47 193.7 173 61.8
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.4e-40 171.8 93 91.4
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.4e-39 167.2 97 86.6
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 8.4e-38 162.5 126 69.0
CsaV3_3G015410 Cucumis sativus L. HOM05D005390 ORTHO05D007086 3.5e-36 157.1 246 45.5
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.3e-35 155.2 80 96.2
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 2.1e-33 147.9 97 78.4
RcHm_v2.0_Chr5g0027631 Rosa chinensis HOM05D005390 ORTHO05D007086 1.8e-32 144.8 162 57.4
Hma1.2p1_2683F.1_g326890 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 9.0e-32 142.5 136 61.8
Nn1g06248 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.9e-26 124.8 78 79.5
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.7e-26 123.2 105 63.8
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 3.7e-25 120.6 87 69.0
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 2.2e-22 111.3 234 35.0
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 6.7e-19 99.8 76 68.4
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 6.7e-19 99.8 76 68.4
CARHR043650 Cardamine hirsuta HOM05D005390 ORTHO05D007086 8.8e-19 99.4 146 45.2
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 1.7e-17 95.1 64 65.6
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 2.2e-17 94.7 78 60.3
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 7.7e-15 86.3 64 65.6
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 5.1e-11 73.6 46 67.4
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 2.0e-10 71.6 46 65.2
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 2.0e-10 71.6 46 65.2


User provided reference genes

Program Settings