Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g05216 Nelumbo nucifera HOM05D006639 ORTHO05D008339 4.6e-46 187.6 98 100.0
Nn053s41924 Nelumbo nucifera HOM05D006639 ORTHO05D008339 6.1e-46 187.2 97 100.0
Nn1g05220 Nelumbo nucifera HOM05D006639 ORTHO05D008339 1.2e-25 119.8 87 79.3
Nn1g05215 Nelumbo nucifera HOM05D006639 ORTHO05D008339 1.4e-21 106.3 57 100.0
Nn1g05039 Nelumbo nucifera HOM05D006639 ORTHO05D008339 7.4e-20 100.5 57 94.7
Nn6g34885 Nelumbo nucifera HOM05D006639 ORTHO05D008339 4.5e-17 91.3 63 82.5
CANSAT56G0593 Cannabis sativa HOM05D006639 ORTHO05D008339 2.6e-12 75.5 57 70.2
CANSAT56G1587 Cannabis sativa HOM05D006639 ORTHO05D008339 2.6e-12 75.5 57 70.2
TAR636G3315 Trochodendron aralioides HOM05D006639 ORTHO05D008339 2.6e-12 75.5 57 66.7
Lalb_Chr19g0136451 Lupinus albus HOM05D006639 ORTHO05D008339 9.8e-12 73.6 72 58.3
MBI17_g08336_MAGBIO Magnolia biondii HOM05D006639 ORTHO05D008339 1.7e-11 72.8 57 71.9
Duzib168G1184 Durio zibethinus HOM05D006639 ORTHO05D008339 2.2e-11 72.4 57 70.2
Thecc.09G282700 Theobroma cacao HOM05D006639 ORTHO05D008339 6.3e-11 70.9 57 68.4
Eucgr.J00499 Eucalyptus grandis HOM05D006639 ORTHO05D008339 8.3e-11 70.5 56 64.3
Potri.009G163500 Populus trichocarpa HOM05D006639 ORTHO05D008339 1.4e-10 69.7 56 69.6
Manes.11G162100 Manihot esculenta HOM05D006639 ORTHO05D008339 2.4e-10 68.9 55 65.5
PGR119G2179 Punica granatum HOM05D006639 ORTHO05D008339 2.4e-10 68.9 55 65.5
TPR.G17231 Trifolium pratense HOM05D006639 ORTHO05D008339 3.1e-10 68.6 69 58.0
Cfa010012 Carpinus fangiana HOM05D006639 ORTHO05D008339 4.1e-10 68.2 74 55.4
Medtr4g052950 Medicago truncatula HOM05D006639 ORTHO05D008339 4.1e-10 68.2 69 58.0
Sabra09G0127600 Salix brachista HOM05D006639 ORTHO05D008339 4.1e-10 68.2 56 66.1
Haze_23370 Corylus avellana HOM05D006639 ORTHO05D008339 5.4e-10 67.8 63 61.9
arahy.Tifrunner.gnm1.ann1.UG6V14 Arachis hypogaea HOM05D006639 ORTHO05D008339 7.0e-10 67.4 73 50.7
Psat7g187880 Pisum sativum HOM05D006639 ORTHO05D008339 7.0e-10 67.4 69 55.1
Prupe.6G130500 Prunus persica HOM05D006639 ORTHO05D008339 1.2e-09 66.6 58 63.8
arahy.Tifrunner.gnm1.ann1.I7PXCJ Arachis hypogaea HOM05D006639 ORTHO05D008339 1.6e-09 66.2 73 50.7
Ca_19409_v3 Cicer arietinum L. HOM05D006639 ORTHO05D008339 1.6e-09 66.2 69 55.1
Glyma.11G183100 Glycine max HOM05D006639 ORTHO05D008339 1.6e-09 66.2 52 67.3
Gohir.A05G080500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 1.6e-09 66.2 57 63.2
Gorai.009G085200 Gossypium raimondii HOM05D006639 ORTHO05D008339 1.6e-09 66.2 57 63.2
Lj3g0014332 Lotus japonicus HOM05D006639 ORTHO05D008339 1.6e-09 66.2 69 52.2
QL01p012190 Quercus lobata HOM05D006639 ORTHO05D008339 1.6e-09 66.2 55 67.3
Phvul.011G094600 Phaseolus vulgaris HOM05D006639 ORTHO05D008339 2.7e-09 65.5 69 55.1
Atru.chr3.3238 Acer truncatum HOM05D006639 ORTHO05D008339 3.5e-09 65.1 55 65.5
FvH4_3g24950 Fragaria vesca HOM05D006639 ORTHO05D008339 3.5e-09 65.1 75 54.7
FAN11G3713 Fragaria x ananassa HOM05D006639 ORTHO05D008339 3.5e-09 65.1 75 54.7
Hund18759 Selenicereus undatus HOM05D006639 ORTHO05D008339 3.5e-09 65.1 91 49.5
Ah.15g095860 Amaranthus hybridus HOM05D006639 ORTHO05D008339 4.5e-09 64.7 91 49.5
Gohir.D05G083500 Gossypium hirsutum HOM05D006639 ORTHO05D008339 4.5e-09 64.7 55 63.6
FAN25G3607 Fragaria x ananassa HOM05D006639 ORTHO05D008339 5.9e-09 64.3 75 53.3
VMungo1127G0544 Vigna mungo HOM05D006639 ORTHO05D008339 5.9e-09 64.3 52 63.5
Ciclev10029525m.g Citrus clementina HOM05D006639 ORTHO05D008339 7.7e-09 63.9 55 63.6
FAN21G1301 Fragaria x ananassa HOM05D006639 ORTHO05D008339 7.7e-09 63.9 75 53.3
MD11G1164600 Malus domestica HOM05D006639 ORTHO05D008339 1.0e-08 63.5 64 59.4
Sc12g0004540 Simmondsia chinensis HOM05D006639 ORTHO05D008339 1.0e-08 63.5 54 63.0
BcaB02g10091 Brassica carinata HOM05D006639 ORTHO05D008339 1.3e-08 63.2 82 50.0
BcaC02g10878 Brassica carinata HOM05D006639 ORTHO05D008339 1.3e-08 63.2 82 50.0
A07p18230 Brassica napus HOM05D006639 ORTHO05D008339 1.3e-08 63.2 82 50.0
C04p24130 Brassica napus HOM05D006639 ORTHO05D008339 1.3e-08 63.2 82 50.0
BolC4t23910H Brassica oleracea HOM05D006639 ORTHO05D008339 1.3e-08 63.2 82 50.0
BraA07t29539Z Brassica rapa HOM05D006639 ORTHO05D008339 1.3e-08 63.2 82 50.0
TWI31G0153 Tripterygium wilfordii HOM05D006639 ORTHO05D008339 1.7e-08 62.8 57 61.4
Atru.BG.107.p Acer truncatum HOM05D006639 ORTHO05D008339 2.2e-08 62.4 52 65.4
FAN16G2085 Fragaria x ananassa HOM05D006639 ORTHO05D008339 2.2e-08 62.4 75 53.3
GSVIVG01036120001 Vitis vinifera HOM05D006639 ORTHO05D008339 2.2e-08 62.4 54 61.1
EL10Ac7g15828 Beta vulgaris HOM05D006639 ORTHO05D008339 2.9e-08 62.0 69 56.5
RcHm_v2.0_Chr5g0044741 Rosa chinensis HOM05D006639 ORTHO05D008339 2.9e-08 62.0 86 50.0
BcaB01g03073 Brassica carinata HOM05D006639 ORTHO05D008339 3.8e-08 61.6 82 46.3
Aqoxy4G02766 Aquilegia oxysepala HOM05D006639 ORTHO05D008339 5.0e-08 61.2 59 59.3
AL4G21460 Arabidopsis lyrata HOM05D006639 ORTHO05D008339 5.0e-08 61.2 82 47.6
CiPaw.14G099800 Carya illinoinensis HOM05D006639 ORTHO05D008339 5.0e-08 61.2 63 57.1
CDE08G1389 Ceratophyllum demersum HOM05D006639 ORTHO05D008339 5.0e-08 61.2 57 57.9
Sed0014981 Sechium edule HOM05D006639 ORTHO05D008339 5.0e-08 61.2 51 60.8
Aa31LG5G8810 Aethionema arabicum HOM05D006639 ORTHO05D008339 6.5e-08 60.8 49 63.3
CARHR120120 Cardamine hirsuta HOM05D006639 ORTHO05D008339 6.5e-08 60.8 82 47.6
Nn135s43805 Nelumbo nucifera HOM05D066312 ORTHO05D008339 6.5e-08 60.8 52 73.1
Sp4g10260 Schrenkiella parvula HOM05D006639 ORTHO05D008339 6.5e-08 60.8 48 64.6
HanXRQChr14g0438101 Helianthus annuus HOM05D006639 ORTHO05D008339 8.5e-08 60.5 56 64.3
PSO339G4282 Papaver somniferum HOM05D006639 ORTHO05D008339 8.5e-08 60.5 58 58.6
PSO384G2857 Papaver somniferum HOM05D006639 ORTHO05D008339 8.5e-08 60.5 58 58.6
MSTRG.18760 Avicennia marina HOM05D006639 ORTHO05D008339 1.1e-07 60.1 55 60.0
CSS0034800 Camellia sinensis var. sinensis HOM05D006639 ORTHO05D008339 1.1e-07 60.1 55 58.2
Glyma.12G089400 Glycine max HOM05D006639 ORTHO05D008339 1.1e-07 60.1 52 61.5
Oeu022427.1 Olea europaea HOM05D006639 ORTHO05D008339 1.1e-07 60.1 55 58.2
MELO3C014503.2 Cucumis melo HOM05D006639 ORTHO05D008339 1.5e-07 59.7 83 47.0
THA.LOC104826426 Tarenaya hassleriana HOM05D006639 ORTHO05D008339 1.5e-07 59.7 49 57.1
CsaV3_6G038390 Cucumis sativus L. HOM05D006639 ORTHO05D008339 1.9e-07 59.3 89 44.9
Lsat_1_v5_gn_2_59441 Lactuca sativa HOM05D006639 ORTHO05D008339 1.9e-07 59.3 56 60.7
AT2G27470 Arabidopsis thaliana HOM05D006639 ORTHO05D008339 2.5e-07 58.9 82 47.6
Carub.0004s0810 Capsella rubella HOM05D006639 ORTHO05D008339 3.2e-07 58.5 82 46.3
Thhalv10017865m.g Eutrema salsugineum HOM05D006639 ORTHO05D008339 3.2e-07 58.5 48 60.4
vmacro03320 Vaccinium macrocarpon HOM05D006639 ORTHO05D008339 4.2e-07 58.2 63 55.6
Rhsim13G0112100 Rhododendron simsii HOM05D006639 ORTHO05D008339 5.5e-07 57.8 55 61.8
BolC3t15529H Brassica oleracea HOM05D006639 ORTHO05D008339 7.2e-07 57.4 48 58.3
CAN.G1524.3 Capsicum annuum HOM05D006639 ORTHO05D008339 7.2e-07 57.4 68 48.5
ClCG02G022260 Citrullus lanatus HOM05D006639 ORTHO05D008339 7.2e-07 57.4 55 56.4
Migut.D02442 Erythranthe guttata HOM05D006639 ORTHO05D008339 9.4e-07 57.0 59 54.2
Oeu031474.1 Olea europaea HOM05D006639 ORTHO05D008339 9.4e-07 57.0 72 45.8
Cc01_g09080 Coffea canephora HOM05D006639 ORTHO05D008339 1.2e-06 56.6 70 48.6
ECA238G3612 Erigeron canadensis HOM05D006639 ORTHO05D008339 1.2e-06 56.6 56 58.9
Lj2A964T5 Lonicera japonica HOM05D006639 ORTHO05D008339 2.1e-06 55.8 102 39.2
Nitab4.5_0000755g0110 Nicotiana tabacum HOM05D006639 ORTHO05D008339 2.1e-06 55.8 51 56.9
Nitab4.5_0010969g0010 Nicotiana tabacum HOM05D006639 ORTHO05D008339 2.1e-06 55.8 51 56.9
C03p31860 Brassica napus HOM05D006639 ORTHO05D008339 2.7e-06 55.5 50 56.0
Os09g0568200 Oryza sativa ssp. japonica HOM05D006639 ORTHO05D008339 4.7e-06 54.7 55 58.2
BcaC01g04942 Brassica carinata HOM05D006639 ORTHO05D008339 6.1e-06 54.3 48 56.2
Zm00001eb308280 Zea mays HOM05D006639 ORTHO05D008339 6.1e-06 54.3 92 43.5


User provided reference genes

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