Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00077 Nelumbo nucifera HOM05D003297 ORTHO05D004027 2.3e-27 124.8 60 100.0
Gorai.006G040100 Gossypium raimondii HOM05D003297 ORTHO05D004027 3.9e-11 70.9 35 88.6
Nn3g16636 Nelumbo nucifera HOM05D003297 ORTHO05D004027 1.1e-10 69.3 33 90.9
Cpa.g.sc130.8 Carica papaya HOM05D003297 ORTHO05D004027 1.5e-10 68.9 32 93.8
CiPaw.03G052300 Carya illinoinensis HOM05D003297 ORTHO05D004027 1.5e-10 68.9 32 93.8
Ciclev10016373m.g Citrus clementina HOM05D003297 ORTHO05D004027 1.5e-10 68.9 32 93.8
Duzib147G0281 Durio zibethinus HOM05D003297 ORTHO05D004027 1.5e-10 68.9 32 93.8
Gohir.A05G340500 Gossypium hirsutum HOM05D003297 ORTHO05D004027 1.5e-10 68.9 32 93.8
Gohir.D04G078900 Gossypium hirsutum HOM05D003297 ORTHO05D004027 1.5e-10 68.9 32 93.8
Gohir.D09G035200 Gossypium hirsutum HOM05D003297 ORTHO05D004027 1.5e-10 68.9 32 93.8
Gorai.012G088800 Gossypium raimondii HOM05D003297 ORTHO05D004027 1.5e-10 68.9 32 93.8
Lsat_1_v5_gn_0_14320 Lactuca sativa HOM05D003297 ORTHO05D004027 1.5e-10 68.9 32 93.8
Lsat_1_v5_gn_2_94421 Lactuca sativa HOM05D003297 ORTHO05D004027 1.5e-10 68.9 32 93.8
Manes.17G106000 Manihot esculenta HOM05D003297 ORTHO05D004027 1.5e-10 68.9 32 93.8
PGR083G1628 Punica granatum HOM05D003297 ORTHO05D004027 1.5e-10 68.9 32 93.8
Thecc.04G030000 Theobroma cacao HOM05D003297 ORTHO05D004027 1.9e-10 68.6 32 90.6
MSTRG.3093 Avicennia marina HOM05D003297 ORTHO05D004027 2.5e-10 68.2 39 76.9
HanXRQChr15g0474721 Helianthus annuus HOM05D003297 ORTHO05D004027 2.5e-10 68.2 38 76.3
MBI15_g24202_MAGBIO Magnolia biondii HOM05D003297 ORTHO05D004027 2.5e-10 68.2 33 87.9
SGA_v2.0_scaffold18G08223 Striga asiatica HOM05D003297 ORTHO05D004027 2.5e-10 68.2 33 87.9
SGA_v2.0_scaffold481G52325 Striga asiatica HOM05D003297 ORTHO05D004027 2.5e-10 68.2 33 87.9
Cfa007254 Carpinus fangiana HOM05D003297 ORTHO05D004027 3.3e-10 67.8 32 90.6
Cc00_g35860 Coffea canephora HOM05D003297 ORTHO05D004027 3.3e-10 67.8 32 90.6
Cc05_g01780 Coffea canephora HOM05D003297 ORTHO05D004027 3.3e-10 67.8 32 90.6
Cc05_g01790 Coffea canephora HOM05D003297 ORTHO05D004027 3.3e-10 67.8 32 90.6
MELO3C022190.2 Cucumis melo HOM05D003297 ORTHO05D004027 3.3e-10 67.8 33 87.9
HanXRQChr17g0534581 Helianthus annuus HOM05D003297 ORTHO05D004027 3.3e-10 67.8 32 90.6
HanXRQChr17g0550191 Helianthus annuus HOM05D003297 ORTHO05D004027 3.3e-10 67.8 32 90.6
Lj1g0013881 Lotus japonicus HOM05D003297 ORTHO05D004027 3.3e-10 67.8 32 90.6
Oeu058767.1 Olea europaea HOM05D003297 ORTHO05D004027 3.3e-10 67.8 33 87.9
Sc03g0006810 Simmondsia chinensis HOM05D003297 ORTHO05D004027 3.3e-10 67.8 32 90.6
unitig_0.g1941 Utricularia gibba HOM05D003297 ORTHO05D004027 3.3e-10 67.8 32 90.6
Zm00001eb121870 Zea mays HOM05D003297 ORTHO05D004027 3.3e-10 67.8 32 90.6
Actinidia38211 Actinidia chinensis HOM05D003297 ORTHO05D004027 4.3e-10 67.4 33 87.9
Haze_14833 Corylus avellana HOM05D003297 ORTHO05D004027 4.3e-10 67.4 32 90.6
Lj7A608T45 Lonicera japonica HOM05D003297 ORTHO05D004027 4.3e-10 67.4 32 90.6
Nitab4.5_0000105g0150 Nicotiana tabacum HOM05D003297 ORTHO05D004027 4.3e-10 67.4 32 90.6
Nitab4.5_0004643g0030 Nicotiana tabacum HOM05D003297 ORTHO05D004027 4.3e-10 67.4 32 90.6
Peaxi162Scf00003g04521 Petunia axillaris HOM05D003297 ORTHO05D004027 4.3e-10 67.4 32 90.6
Peaxi162Scf00304g00127 Petunia axillaris HOM05D003297 ORTHO05D004027 4.3e-10 67.4 32 90.6
THA.LOC104822413 Tarenaya hassleriana HOM05D003297 ORTHO05D004027 4.3e-10 67.4 32 90.6
TWI36G1507 Tripterygium wilfordii HOM05D003297 ORTHO05D004027 4.3e-10 67.4 32 90.6
Actinidia30893 Actinidia chinensis HOM05D003297 ORTHO05D004027 5.6e-10 67.0 32 90.6
CSS0005089 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 5.6e-10 67.0 32 90.6
CSS0009984 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 5.6e-10 67.0 32 90.6
CSS0027121 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 5.6e-10 67.0 32 90.6
ClCG08G000860 Citrullus lanatus HOM05D003297 ORTHO05D004027 5.6e-10 67.0 33 87.9
Gohir.A09G034300 Gossypium hirsutum HOM05D003297 ORTHO05D004027 5.6e-10 67.0 32 90.6
Sed0027775 Sechium edule HOM05D003297 ORTHO05D004027 5.6e-10 67.0 33 87.9
Hund18929 Selenicereus undatus HOM05D003297 ORTHO05D004027 5.6e-10 67.0 37 78.4
Os01g0184800 Oryza sativa ssp. japonica HOM05D003297 ORTHO05D004027 7.3e-10 66.6 32 87.5
TAR371G0644 Trochodendron aralioides HOM05D003297 ORTHO05D004027 7.3e-10 66.6 33 84.8
Zm00001eb269870 Zea mays HOM05D003297 ORTHO05D004027 7.3e-10 66.6 32 87.5
ATR1136G208 Amborella trichopoda HOM05D003297 ORTHO05D004027 9.5e-10 66.2 33 84.8
Dinv25678 Davidia involucrata HOM05D003297 ORTHO05D004027 9.5e-10 66.2 30 96.7
QL02p072446 Quercus lobata HOM05D003297 ORTHO05D004027 9.5e-10 66.2 32 87.5
SEGI_15348 Sequoiadendron giganteum HOM05D003297 ORTHO05D004027 9.5e-10 66.2 33 84.8
GSVIVG01001822001 Vitis vinifera HOM05D003297 ORTHO05D004027 9.5e-10 66.2 30 96.7
Aa31LG11G15030 Aethionema arabicum HOM05D003297 ORTHO05D004027 1.2e-09 65.9 30 93.3
arahy.Tifrunner.gnm1.ann1.5QR84K Arachis hypogaea HOM05D003297 ORTHO05D004027 1.2e-09 65.9 73 50.7
arahy.Tifrunner.gnm1.ann1.G51SBL Arachis hypogaea HOM05D003297 ORTHO05D004027 1.2e-09 65.9 73 50.7
COL.COLO4_08765 Corchorus olitorius HOM05D003297 ORTHO05D004027 1.2e-09 65.9 32 90.6
Duzib264G0931 Durio zibethinus HOM05D003297 ORTHO05D004027 1.2e-09 65.9 32 87.5
Hma1.2p1_0172F.1_g076190 Hydrangea macrophylla HOM05D003297 ORTHO05D004027 1.2e-09 65.9 59 61.0
Lj4g0023257 Lotus japonicus HOM05D003297 ORTHO05D004027 1.2e-09 65.9 42 73.8
MD09G1015300 Malus domestica HOM05D003297 ORTHO05D004027 1.2e-09 65.9 32 90.6
Phvul.004G055600 Phaseolus vulgaris HOM05D003297 ORTHO05D004027 1.2e-09 65.9 32 87.5
Prupe.3G302500 Prunus persica HOM05D003297 ORTHO05D004027 1.2e-09 65.9 32 90.6
Prupe.6G027300 Prunus persica HOM05D003297 ORTHO05D004027 1.2e-09 65.9 32 90.6
CsaV3_3G044040 Cucumis sativus L. HOM05D003297 ORTHO05D004027 1.6e-09 65.5 33 81.8
Atru.chr6.2513 Acer truncatum HOM05D003297 ORTHO05D004027 2.1e-09 65.1 32 87.5
Lj5A712T32 Lonicera japonica HOM05D003297 ORTHO05D004027 2.1e-09 65.1 39 79.5
Lalb_Chr06g0174311 Lupinus albus HOM05D003297 ORTHO05D004027 2.1e-09 65.1 30 93.3
Phvul.010G007000 Phaseolus vulgaris HOM05D003297 ORTHO05D004027 2.1e-09 65.1 32 87.5
vmacro05937 Vaccinium macrocarpon HOM05D003297 ORTHO05D004027 2.1e-09 65.1 30 93.3
Ah.16g107000 Amaranthus hybridus HOM05D003297 ORTHO05D004027 2.8e-09 64.7 32 87.5
AL6G24920 Arabidopsis lyrata HOM05D003297 ORTHO05D004027 2.8e-09 64.7 28 100.0
arahy.Tifrunner.gnm1.ann1.PXFG7S Arachis hypogaea HOM05D003297 ORTHO05D004027 2.8e-09 64.7 36 83.3
CDE04G3082 Ceratophyllum demersum HOM05D003297 ORTHO05D004027 2.8e-09 64.7 32 81.2
CDE07G1941 Ceratophyllum demersum HOM05D003297 ORTHO05D004027 2.8e-09 64.7 32 81.2
Eucgr.J02308 Eucalyptus grandis HOM05D003297 ORTHO05D004027 2.8e-09 64.7 32 87.5
MD17G1015400 Malus domestica HOM05D003297 ORTHO05D004027 2.8e-09 64.7 32 87.5
Solyc10g078830.2 Solanum lycopersicum HOM05D003297 ORTHO05D004027 2.8e-09 64.7 30 93.3
Sopen10g029470 Solanum pennellii HOM05D003297 ORTHO05D004027 2.8e-09 64.7 30 93.3
PGSC0003DMG400011416 Solanum tuberosum HOM05D003297 ORTHO05D004027 2.8e-09 64.7 30 93.3
AT5G14240 Arabidopsis thaliana HOM05D003297 ORTHO05D004027 3.6e-09 64.3 28 96.4
arahy.Tifrunner.gnm1.ann1.IZLP0D Arachis hypogaea HOM05D003297 ORTHO05D004027 3.6e-09 64.3 32 87.5
CARHR199100 Cardamine hirsuta HOM05D003297 ORTHO05D004027 3.6e-09 64.3 28 96.4
AUR62001824 Chenopodium quinoa HOM05D003297 ORTHO05D004027 3.6e-09 64.3 32 87.5
AUR62009611 Chenopodium quinoa HOM05D003297 ORTHO05D004027 3.6e-09 64.3 32 87.5
Potri.001G334100 Populus trichocarpa HOM05D003297 ORTHO05D004027 3.6e-09 64.3 32 87.5
Sabra16G0215200 Salix brachista HOM05D003297 ORTHO05D004027 3.6e-09 64.3 32 87.5
Hund04990 Selenicereus undatus HOM05D003297 ORTHO05D004027 3.6e-09 64.3 32 87.5
EL10Ac9g22681 Beta vulgaris HOM05D003297 ORTHO05D004027 4.7e-09 63.9 32 87.5
DCAR_021763 Daucus carota HOM05D003297 ORTHO05D004027 4.7e-09 63.9 30 90.0
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 4.7e-09 63.9 32 87.5
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 4.7e-09 63.9 32 87.5
Rhsim06G0126200 Rhododendron simsii HOM05D003297 ORTHO05D004027 4.7e-09 63.9 30 90.0
Glyma.12G242000 Glycine max HOM05D003297 ORTHO05D004027 6.2e-09 63.5 30 90.0
Glyma.19G075600 Glycine max HOM05D003297 ORTHO05D004027 6.2e-09 63.5 30 90.0
BcaB01g05299 Brassica carinata HOM05D003297 ORTHO05D004027 8.1e-09 63.2 28 96.4
BcaB01g06337 Brassica carinata HOM05D003297 ORTHO05D004027 8.1e-09 63.2 28 96.4
BcaB08g36969 Brassica carinata HOM05D003297 ORTHO05D004027 8.1e-09 63.2 28 96.4
BcaC04g19050 Brassica carinata HOM05D003297 ORTHO05D004027 8.1e-09 63.2 28 96.4
A03p06500 Brassica napus HOM05D003297 ORTHO05D004027 8.1e-09 63.2 28 96.4
A10p24230 Brassica napus HOM05D003297 ORTHO05D004027 8.1e-09 63.2 28 96.4
C03p07500 Brassica napus HOM05D003297 ORTHO05D004027 8.1e-09 63.2 28 96.4
C09p62920 Brassica napus HOM05D003297 ORTHO05D004027 8.1e-09 63.2 28 96.4
BolC3t13251H Brassica oleracea HOM05D003297 ORTHO05D004027 8.1e-09 63.2 28 96.4
BolC9t59129H Brassica oleracea HOM05D003297 ORTHO05D004027 8.1e-09 63.2 28 96.4
BraA03t09982Z Brassica rapa HOM05D003297 ORTHO05D004027 8.1e-09 63.2 28 96.4
BraA10t44488Z Brassica rapa HOM05D003297 ORTHO05D004027 8.1e-09 63.2 28 96.4
CANSAT64G0772 Cannabis sativa HOM05D003297 ORTHO05D004027 8.1e-09 63.2 32 84.4
Carub.0006s1244 Capsella rubella HOM05D003297 ORTHO05D004027 8.1e-09 63.2 28 96.4
Thhalv10014458m.g Eutrema salsugineum HOM05D003297 ORTHO05D004027 8.1e-09 63.2 28 96.4
Sp6g29790 Schrenkiella parvula HOM05D003297 ORTHO05D004027 8.1e-09 63.2 28 96.4
Aqoxy3G01473 Aquilegia oxysepala HOM05D003297 ORTHO05D004027 1.1e-08 62.8 32 84.4
C02p06630 Brassica napus HOM05D003297 ORTHO05D004027 1.1e-08 62.8 28 96.4
Rhsim10G0008800 Rhododendron simsii HOM05D003297 ORTHO05D004027 1.1e-08 62.8 30 86.7
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 1.4e-08 62.4 33 81.8
Nn1g00668 Nelumbo nucifera HOM05D003297 ORTHO05D004027 1.4e-08 62.4 33 87.9
Psat1g161760 Pisum sativum HOM05D003297 ORTHO05D004027 1.4e-08 62.4 32 78.1
SMO147G0291 Selaginella moellendorffii HOM05D003297 ORTHO05D004027 1.4e-08 62.4 32 81.2
PSO478G3807 Papaver somniferum HOM05D003297 ORTHO05D004027 1.8e-08 62.0 33 75.8
PSO541G1060 Papaver somniferum HOM05D003297 ORTHO05D004027 1.8e-08 62.0 33 75.8
PSO675G2052 Papaver somniferum HOM05D003297 ORTHO05D004027 1.8e-08 62.0 33 75.8
HPP92_005181 Vanilla planifolia HOM05D003297 ORTHO05D004027 2.3e-08 61.6 47 55.3
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 3.1e-08 61.2 33 81.8
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 3.1e-08 61.2 33 81.8
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 3.1e-08 61.2 33 81.8
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 3.1e-08 61.2 33 81.8
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 3.1e-08 61.2 33 81.8
Migut.D01746 Erythranthe guttata HOM05D003297 ORTHO05D004027 4.0e-08 60.8 32 78.1
Migut.H00013 Erythranthe guttata HOM05D003297 ORTHO05D004027 4.0e-08 60.8 32 78.1
CSS0031371 Camellia sinensis var. sinensis HOM05D003297 ORTHO05D004027 5.2e-08 60.5 35 80.0
TPR.G5775 Trifolium pratense HOM05D003297 ORTHO05D004027 5.2e-08 60.5 32 78.1
Medtr2g034610 Medicago truncatula HOM05D003297 ORTHO05D004027 8.9e-08 59.7 30 80.0
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 1.2e-07 59.3 33 78.8
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 1.2e-07 59.3 43 67.4
Mapoly0059s0038 Marchantia polymorpha HOM05D003297 ORTHO05D004027 1.5e-07 58.9 33 75.8
FAN05G2878 Fragaria x ananassa HOM05D003297 ORTHO05D004027 2.0e-07 58.5 30 76.7
FAN05G2899 Fragaria x ananassa HOM05D003297 ORTHO05D004027 2.0e-07 58.5 30 76.7
FAN14G1208 Fragaria x ananassa HOM05D003297 ORTHO05D004027 2.0e-07 58.5 30 76.7
RcHm_v2.0_Chr3g0477231 Rosa chinensis HOM05D003297 ORTHO05D004027 2.0e-07 58.5 30 76.7
RcHm_v2.0_Chr3g0477241 Rosa chinensis HOM05D003297 ORTHO05D004027 2.0e-07 58.5 30 76.7
AagrBONN_evm.TU.Sc2ySwM_368.1649 Anthoceros agrestis HOM05D003297 ORTHO05D004027 3.4e-07 57.8 32 75.0
Nn6g34769 Nelumbo nucifera HOM05D003297 ORTHO05D004027 5.8e-07 57.0 28 92.9
ECA246G0154 Erigeron canadensis HOM05D003297 ORTHO05D004027 2.2e-06 55.1 26 88.5
RcHm_v2.0_Chr1g0359651 Rosa chinensis HOM05D003297 ORTHO05D004027 2.2e-06 55.1 30 73.3
Nitab4.5_0003600g0020 Nicotiana tabacum HOM05D003297 ORTHO05D004027 4.9e-06 53.9 26 88.5
Pp3c2_20640 Physcomitrium patens HOM05D003297 ORTHO05D004027 8.4e-06 53.1 32 71.9


User provided reference genes

Program Settings