Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 7.7e-132 473.8 234 100.0
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 9.5e-114 413.7 282 77.7
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 3.1e-104 382.1 282 70.6
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 7.1e-101 370.9 277 71.1
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 8.6e-99 364.0 275 71.3
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 9.5e-98 360.5 279 65.9
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 2.8e-97 359.0 279 65.9
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 3.6e-97 358.6 275 70.2
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 8.4e-94 347.4 281 64.4
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.4e-93 345.9 285 64.2
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.1e-92 342.8 277 64.6
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 1.3e-91 340.1 280 63.9
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 7.3e-90 334.3 282 61.0
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 9.6e-90 334.0 280 62.1
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 2.1e-89 332.8 282 62.4
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 3.6e-89 332.0 283 60.8
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 6.2e-89 331.3 274 63.5
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 8.1e-89 330.9 283 59.7
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 1.4e-88 330.1 284 61.6
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 1.8e-88 329.7 278 61.2
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 3.1e-88 328.9 279 60.6
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 1.2e-87 327.0 279 59.5
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.5e-87 326.6 280 61.8
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 9.9e-87 323.9 281 59.8
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 9.9e-87 323.9 283 59.4
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 1.3e-86 323.6 282 60.6
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 1.3e-86 323.6 283 60.1
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 4.9e-86 321.6 276 60.5
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 6.4e-86 321.2 284 58.8
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 6.4e-86 321.2 284 58.8
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 6.4e-86 321.2 283 58.0
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 6.4e-86 321.2 283 58.0
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 6.4e-86 321.2 276 59.1
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 6.4e-86 321.2 284 58.1
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.1e-85 320.5 285 58.2
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.1e-85 320.5 285 58.2
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 1.9e-85 319.7 285 60.4
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 1.9e-85 319.7 283 58.0
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.4e-85 319.3 284 58.1
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 4.2e-85 318.5 285 58.2
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 5.4e-85 318.2 282 57.1
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 5.4e-85 318.2 327 53.5
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 7.1e-85 317.8 284 58.5
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 2.1e-84 316.2 284 58.8
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 2.1e-84 316.2 285 57.5
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 2.7e-84 315.8 288 58.0
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 3.5e-84 315.5 283 57.2
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 3.5e-84 315.5 283 57.2
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 2.3e-83 312.8 287 58.2
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 2.3e-83 312.8 274 60.6
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 2.3e-83 312.8 275 58.2
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 3.0e-83 312.4 287 58.2
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 5.1e-83 311.6 282 57.1
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 5.1e-83 311.6 284 58.1
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 6.6e-83 311.2 287 57.8
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 1.1e-82 310.5 332 51.2
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 1.1e-82 310.5 284 57.7
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 1.9e-82 309.7 275 57.5
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 3.3e-82 308.9 280 57.9
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 3.3e-82 308.9 256 62.9
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 4.3e-82 308.5 273 58.6
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 5.6e-82 308.1 280 57.9
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 1.3e-81 307.0 284 58.8
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.6e-81 306.6 274 58.0
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 2.1e-81 306.2 288 56.9
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 4.8e-81 305.1 288 56.9
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 8.1e-81 304.3 251 61.8
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.4e-80 303.5 305 53.8
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.4e-80 303.5 305 53.8
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 1.8e-80 303.1 284 57.0
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 2.4e-80 302.8 275 57.5
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 5.3e-80 301.6 201 69.2
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 1.2e-79 300.4 315 53.0
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 1.2e-79 300.4 274 58.0
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 1.5e-79 300.1 273 56.0
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 2.6e-79 299.3 275 57.8
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 5.8e-79 298.1 285 55.1
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 5.8e-79 298.1 246 60.6
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 7.6e-79 297.7 330 50.0
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 7.6e-79 297.7 276 56.5
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 9.9e-79 297.4 274 56.6
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 9.9e-79 297.4 280 54.6
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 1.7e-78 296.6 275 56.4
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 2.2e-78 296.2 282 55.7
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 2.9e-78 295.8 225 65.8
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 8.4e-78 294.3 275 56.0
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.9e-77 293.1 276 55.4
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 4.6e-76 288.5 294 53.1
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 6.0e-76 288.1 266 55.3
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 1.3e-75 287.0 257 57.2
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 6.7e-75 284.6 254 57.9
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 8.7e-75 284.3 263 58.2
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 3.6e-73 278.9 253 56.1
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 3.6e-73 278.9 278 54.0
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 8.1e-73 277.7 276 55.8
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 4.0e-72 275.4 242 57.0
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 1.2e-71 273.9 262 54.6
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 6.7e-67 258.1 281 50.9
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 4.3e-66 255.4 353 43.6
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 4.8e-65 251.9 236 57.2
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 4.8e-65 251.9 313 46.3
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 3.1e-64 249.2 248 53.6
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 4.0e-64 248.8 287 48.1
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 7.6e-63 244.6 288 47.6
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 2.9e-62 242.7 278 50.0
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 2.9e-62 242.7 279 48.0
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 6.5e-62 241.5 214 57.5
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 2.5e-61 239.6 218 57.8
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 3.5e-60 235.7 271 49.8
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 1.8e-59 233.4 274 47.8
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 2.3e-59 233.0 265 49.1
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 6.7e-59 231.5 220 55.5
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 1.1e-58 230.7 265 48.7
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.9e-58 229.9 275 50.5
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 4.3e-58 228.8 271 49.4
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.3e-58 228.8 271 49.1
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 9.6e-58 227.6 289 47.8
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.7e-57 225.7 272 48.5
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 2.0e-55 219.9 283 44.5
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 2.9e-54 216.1 260 50.0
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.1e-53 214.2 202 54.0
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 7.4e-50 201.4 207 50.7
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 1.6e-49 200.3 203 51.7
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 1.8e-48 196.8 275 40.4
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 1.7e-46 190.3 256 42.2
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 8.5e-46 188.0 261 42.5
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 2.7e-44 183.0 134 66.4
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 1.0e-43 181.0 108 85.2
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 3.0e-43 179.5 253 40.3
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.7e-41 173.7 264 38.3
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.8e-40 170.2 242 43.4
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 4.5e-39 165.6 255 37.3
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 2.6e-34 149.8 126 57.9
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 4.8e-33 145.6 249 40.2
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.7e-30 137.1 133 51.1
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 1.9e-29 133.7 102 61.8
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 3.2e-29 132.9 172 43.0
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 1.2e-28 131.0 184 44.6
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 1.5e-26 124.0 211 34.1
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 5.3e-24 115.5 262 31.7
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 1.2e-23 114.4 245 32.7
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 5.9e-23 112.1 239 32.2
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.0e-22 111.3 84 67.9
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 6.5e-22 108.6 162 40.7
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 1.6e-20 104.0 73 72.6
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 1.6e-20 104.0 73 72.6
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 1.6e-20 104.0 73 72.6
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 2.3e-19 100.1 258 30.2
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 4.0e-19 99.4 64 71.9
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 2.2e-17 93.6 119 40.3
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 1.8e-16 90.5 120 37.5
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.0e-14 84.7 371 24.5
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.2e-10 71.2 217 27.2
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 4.4e-10 69.3 76 44.7
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 4.4e-10 69.3 257 25.3
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 9.8e-10 68.2 61 54.1
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 9.8e-10 68.2 109 37.6
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.1e-08 63.2 117 33.3
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 5.4e-08 62.4 83 48.2
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 2.7e-07 60.1 127 32.3


User provided reference genes

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