Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.4e-161 572.8 273 100.0
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 2.3e-159 565.5 276 98.2
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 2.6e-155 552.0 273 95.2
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 7.1e-153 543.9 276 94.2
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 2.7e-152 542.0 276 93.5
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 3.5e-152 541.6 276 93.8
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 3.3e-142 508.4 276 85.1
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 4.3e-142 508.1 276 86.6
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 5.6e-142 507.7 276 85.5
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 4.8e-141 504.6 276 85.5
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 6.2e-141 504.2 276 85.5
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 1.8e-140 502.7 276 84.8
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 4.0e-140 501.5 276 84.8
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 1.3e-138 496.5 276 84.1
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 1.3e-138 496.5 276 85.1
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 2.2e-138 495.7 276 83.7
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 2.2e-138 495.7 272 85.7
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 2.2e-138 495.7 276 84.4
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 2.2e-138 495.7 276 84.4
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 2.2e-138 495.7 278 84.9
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 2.9e-138 495.4 276 84.8
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 4.9e-138 494.6 276 85.1
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 4.9e-138 494.6 303 79.2
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 4.9e-138 494.6 276 84.1
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 6.4e-138 494.2 276 83.7
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 8.4e-138 493.8 276 83.7
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 1.9e-137 492.7 276 82.6
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 3.2e-137 491.9 275 83.6
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 3.2e-137 491.9 275 83.6
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 1.2e-136 490.0 276 83.3
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 1.2e-136 490.0 276 83.0
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 1.2e-136 490.0 276 83.3
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 2.1e-136 489.2 276 83.0
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 2.1e-136 489.2 276 84.1
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 2.7e-136 488.8 276 83.0
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 2.7e-136 488.8 276 84.1
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 1.0e-135 486.9 276 82.2
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 1.0e-135 486.9 276 83.3
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 1.0e-135 486.9 276 84.1
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 1.8e-135 486.1 276 82.6
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 1.8e-135 486.1 276 83.0
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.3e-135 485.7 276 83.0
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 3.0e-135 485.3 276 81.5
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 3.9e-135 485.0 276 83.3
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 5.1e-135 484.6 276 83.0
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 5.1e-135 484.6 276 82.6
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 6.7e-135 484.2 276 81.9
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 8.7e-135 483.8 276 83.3
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 1.1e-134 483.4 276 83.3
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 1.1e-134 483.4 302 76.5
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 1.1e-134 483.4 276 81.9
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 1.9e-134 482.6 276 81.5
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 3.3e-134 481.9 276 82.2
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 3.3e-134 481.9 276 81.2
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 5.6e-134 481.1 276 81.9
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 5.6e-134 481.1 278 82.0
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 7.4e-134 480.7 276 82.2
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 1.3e-133 479.9 276 82.2
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 1.6e-133 479.6 276 81.2
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 2.1e-133 479.2 276 83.0
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 2.1e-133 479.2 275 82.9
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 2.8e-133 478.8 276 81.2
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 3.7e-133 478.4 276 81.2
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 1.4e-132 476.5 276 81.9
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 1.8e-132 476.1 276 80.8
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 3.1e-132 475.3 276 81.2
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 6.9e-132 474.2 276 81.2
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 1.2e-131 473.4 276 81.2
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 2.6e-131 472.2 276 79.7
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 3.4e-131 471.9 276 80.1
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 4.5e-131 471.5 276 80.1
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 5.8e-131 471.1 276 79.7
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 7.6e-131 470.7 276 79.7
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.0e-130 470.3 276 80.1
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 1.3e-130 469.9 276 80.1
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.3e-130 469.9 276 80.4
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 1.7e-130 469.5 276 79.7
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 1.7e-130 469.5 276 79.7
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 2.2e-130 469.2 276 79.7
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 2.2e-130 469.2 276 81.2
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 2.9e-130 468.8 276 79.0
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 4.9e-130 468.0 277 81.2
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 4.9e-130 468.0 272 80.1
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 8.4e-130 467.2 276 79.3
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 8.4e-130 467.2 276 79.3
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 1.4e-129 466.5 295 74.9
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 1.9e-129 466.1 276 79.0
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 1.9e-129 466.1 276 79.0
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 3.2e-129 465.3 276 79.0
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 4.2e-129 464.9 276 79.3
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 5.5e-129 464.5 277 80.9
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 1.6e-128 463.0 305 74.1
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 2.1e-128 462.6 276 78.6
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 2.1e-128 462.6 276 78.6
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 2.1e-128 462.6 276 79.7
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 6.0e-128 461.1 276 78.6
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 1.0e-127 460.3 276 79.0
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 3.0e-127 458.8 277 79.4
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 6.7e-127 457.6 276 78.6
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 6.7e-127 457.6 276 77.9
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 1.1e-126 456.8 276 79.0
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 5.7e-126 454.5 276 77.9
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 7.4e-126 454.1 283 76.7
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 9.7e-126 453.8 276 76.4
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 1.3e-125 453.4 276 78.3
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 1.7e-122 443.0 277 77.3
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 3.2e-121 438.7 268 77.6
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 7.2e-121 437.6 274 75.9
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 9.4e-121 437.2 277 75.8
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 9.4e-121 437.2 277 75.8
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 2.1e-120 436.0 274 75.2
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.0e-119 433.7 300 71.7
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 1.8e-119 433.0 276 76.4
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 4.3e-118 428.3 276 72.8
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 9.1e-116 420.6 321 66.7
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 2.9e-114 415.6 276 71.0
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 7.2e-113 411.0 273 74.4
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 1.4e-111 406.8 294 68.7
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 4.5e-107 391.7 217 87.1
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 1.9e-105 386.3 273 74.4
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 1.6e-104 383.3 276 68.5
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 2.1e-104 382.9 221 84.6
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 1.8e-103 379.8 277 65.7
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 5.2e-103 378.3 278 65.8
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 5.2e-103 378.3 273 67.0
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 2.4e-100 369.4 218 82.1
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 7.7e-99 364.4 276 63.4
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 6.5e-98 361.3 285 62.5
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 3.2e-97 359.0 276 62.3
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 3.0e-95 352.4 241 71.8
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 8.8e-95 350.9 276 63.4
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.4e-86 322.4 270 58.9
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 3.8e-82 308.9 277 56.0
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 2.0e-75 286.6 248 62.9
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 6.6e-74 281.6 261 55.6
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 8.6e-74 281.2 273 56.0
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 1.6e-72 276.9 185 73.0
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 1.5e-70 270.4 231 58.4
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 2.2e-69 266.5 153 80.4
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 3.1e-63 246.1 257 53.7
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 1.4e-55 220.7 275 44.0
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 1.4e-52 210.7 274 42.3
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.2e-51 207.6 151 66.2
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 4.3e-49 199.1 277 39.7
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 4.6e-43 179.1 188 54.8
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 1.0e-42 177.9 126 73.0
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 3.6e-32 142.9 106 66.0
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 6.7e-26 122.1 93 68.8
Cc01_g20960 Coffea canephora HOM05D003985 ORTHO05D044681 2.8e-24 116.7 61 75.4
Lalb_Chr08g0243671 Lupinus albus HOM05D003985 ORTHO05D044681 1.2e-22 111.3 59 79.7
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 7.6e-22 108.6 98 63.3
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.1e-15 86.7 50 82.0
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 4.1e-15 86.3 69 58.0
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 1.2e-14 84.7 82 57.3
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 3.5e-11 73.2 43 83.7
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 1.4e-07 61.2 40 72.5


User provided reference genes

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