Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0013199g0010 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.0e-68 263.5 150 100.0
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.1e-45 186.0 145 79.3
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 9.6e-35 150.6 145 69.0
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 7.9e-29 131.0 145 63.4
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 5.1e-28 128.3 145 62.8
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 4.5e-16 88.6 135 43.0
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 7.9e-13 77.8 105 43.8
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 1.4e-12 77.0 151 36.4
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 3.9e-12 75.5 152 38.2
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 6.7e-12 74.7 103 47.6
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 8.8e-12 74.3 135 40.7
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.5e-11 73.6 105 52.4
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 5.7e-11 71.6 140 37.9
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.3e-10 70.5 153 41.2
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 1.3e-10 70.5 120 39.2
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.2e-10 69.7 102 40.2
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 3.7e-10 68.9 145 35.9
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 6.3e-10 68.2 109 39.4
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 8.2e-10 67.8 124 41.1
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 8.2e-10 67.8 124 41.1
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 1.8e-09 66.6 68 54.4
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 2.4e-09 66.2 105 46.7
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 2.4e-09 66.2 103 40.8
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 4.1e-09 65.5 105 44.8
TWI36G1524 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 5.3e-09 65.1 119 40.3
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 9.1e-09 64.3 95 40.0
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 1.2e-08 63.9 110 40.0
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 2.6e-08 62.8 138 32.6
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 2.6e-08 62.8 154 35.7
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 4.5e-08 62.0 74 47.3
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 7.7e-08 61.2 139 34.5
CSS0038746 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 1.3e-07 60.5 136 44.9
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 1.3e-07 60.5 151 39.1
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 1.7e-07 60.1 77 45.5
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 1.7e-07 60.1 56 51.8
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 1.7e-07 60.1 111 44.1
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 2.2e-07 59.7 118 44.1
Gohir.A04G096700 Gossypium hirsutum HOM05D004087 ORTHO05D004787 2.2e-07 59.7 125 38.4
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 2.9e-07 59.3 106 43.4
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 2.9e-07 59.3 108 35.2
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 2.9e-07 59.3 72 61.1
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 3.8e-07 58.9 56 53.6
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 6.5e-07 58.2 56 51.8
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 8.5e-07 57.8 131 31.3
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.1e-06 57.4 91 36.3
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 1.1e-06 57.4 159 39.0
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 1.4e-06 57.0 121 33.9
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 2.5e-06 56.2 146 39.0
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 4.2e-06 55.5 56 50.0
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 4.2e-06 55.5 83 54.2
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 4.2e-06 55.5 56 44.6
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 5.5e-06 55.1 70 55.7
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 5.5e-06 55.1 111 36.0
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 5.5e-06 55.1 111 36.0
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 5.5e-06 55.1 56 50.0
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 5.5e-06 55.1 129 31.8
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 5.5e-06 55.1 171 34.5
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 7.2e-06 54.7 56 50.0
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 9.4e-06 54.3 56 48.2
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 9.4e-06 54.3 125 39.2
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 9.4e-06 54.3 56 48.2
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 9.4e-06 54.3 70 57.1
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 9.4e-06 54.3 56 50.0
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 9.4e-06 54.3 54 53.7
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 9.4e-06 54.3 133 35.3
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 9.4e-06 54.3 56 50.0
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 9.4e-06 54.3 131 42.0


User provided reference genes

Program Settings