Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 0.0e+00 1120.1 572 100.0
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 9.9e-282 973.0 633 82.1
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 1.4e-240 836.3 453 93.6
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 7.2e-240 833.9 453 93.4
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 2.3e-238 828.9 453 92.1
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 8.8e-238 827.0 453 91.6
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 4.4e-237 824.7 453 91.4
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 2.0e-210 736.1 454 81.3
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 9.5e-200 700.7 448 78.8
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 2.1e-199 699.5 443 78.8
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 2.8e-199 699.1 444 79.1
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 7.5e-197 691.0 448 78.1
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 3.2e-195 685.6 448 76.3
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 4.1e-195 685.3 444 79.1
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 5.4e-195 684.9 454 74.2
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 2.3e-193 679.5 451 75.6
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 3.9e-193 678.7 444 76.1
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 5.1e-193 678.3 437 77.3
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 1.9e-192 676.4 453 75.1
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 1.6e-191 673.3 444 75.9
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 2.1e-191 672.9 443 76.1
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 6.2e-191 671.4 443 75.4
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 3.1e-190 669.1 446 75.1
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 5.2e-190 668.3 443 75.2
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 5.2e-190 668.3 456 74.1
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 8.9e-190 667.5 443 75.2
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.0e-189 666.4 463 73.4
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 2.0e-189 666.4 447 77.2
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 2.6e-189 666.0 445 75.3
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 3.4e-189 665.6 463 73.4
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 4.4e-189 665.2 467 72.2
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 4.4e-189 665.2 444 76.8
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 1.3e-188 663.7 444 75.7
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 4.9e-188 661.8 444 76.8
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 1.1e-187 660.6 444 75.0
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.9e-187 659.8 446 74.9
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 2.4e-187 659.4 441 74.6
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.4e-187 659.4 446 74.7
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 3.2e-187 659.1 441 76.2
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 5.4e-187 658.3 452 73.5
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 5.4e-187 658.3 448 75.2
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 9.2e-187 657.5 448 73.7
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.1e-186 656.4 446 74.2
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 2.7e-186 656.0 452 73.9
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 2.7e-186 656.0 446 75.6
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 3.5e-186 655.6 448 73.4
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 4.6e-186 655.2 444 74.8
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 1.0e-185 654.1 443 75.4
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 3.0e-185 652.5 462 71.6
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 1.5e-184 650.2 444 73.4
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 3.3e-184 649.0 441 75.1
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 3.3e-184 649.0 444 75.2
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 4.3e-184 648.7 447 73.6
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 7.3e-184 647.9 444 73.2
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 7.3e-184 647.9 445 73.9
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 4.7e-183 645.2 444 73.6
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 1.8e-182 643.3 454 71.6
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 5.2e-182 641.7 454 70.9
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 8.9e-182 641.0 454 71.4
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 2.6e-181 639.4 443 72.5
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 3.4e-181 639.0 442 72.2
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 4.4e-181 638.6 446 72.6
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 7.6e-181 637.9 460 72.0
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 9.9e-181 637.5 454 71.8
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 9.9e-181 637.5 442 72.4
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 1.3e-180 637.1 445 72.4
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 3.8e-180 635.6 443 72.0
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.1e-179 634.0 442 71.9
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 5.4e-179 631.7 444 71.6
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 4.6e-178 628.6 444 71.6
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 1.0e-177 627.5 450 72.0
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 1.3e-177 627.1 453 71.5
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 3.9e-177 625.5 421 76.0
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 6.6e-177 624.8 444 70.7
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.1e-176 624.0 448 68.8
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.1e-176 624.0 444 69.1
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 1.5e-176 623.6 448 68.5
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 3.3e-176 622.5 450 71.3
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 4.3e-176 622.1 444 71.6
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 7.3e-176 621.3 448 68.5
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 7.3e-176 621.3 451 70.3
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.2e-175 620.5 448 68.8
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 2.8e-175 619.4 450 70.0
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 1.8e-174 616.7 450 68.2
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 1.8e-174 616.7 450 68.2
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 1.8e-174 616.7 448 67.9
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 2.4e-174 616.3 446 68.8
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 2.4e-174 616.3 444 68.9
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 4.0e-174 615.5 450 68.0
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 4.0e-174 615.5 450 68.0
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.2e-173 614.0 461 67.0
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 1.2e-173 614.0 443 72.5
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.5e-173 613.6 448 68.1
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 3.4e-173 612.5 448 69.0
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 3.4e-173 612.5 448 68.1
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 4.4e-173 612.1 450 67.8
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 5.8e-173 611.7 444 70.5
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 9.9e-173 610.9 448 68.3
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.3e-172 610.5 453 66.9
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 1.3e-172 610.5 465 65.8
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 2.2e-172 609.8 448 67.6
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 2.2e-172 609.8 448 67.6
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 2.9e-172 609.4 461 65.9
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 6.4e-172 608.2 448 67.4
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 5.4e-171 605.1 444 71.2
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 7.1e-171 604.7 441 69.6
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 6.0e-170 601.7 461 66.8
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 7.3e-168 594.7 444 67.3
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 1.1e-166 590.9 487 63.7
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 1.4e-166 590.5 500 61.0
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 7.6e-165 584.7 443 67.3
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 5.4e-163 578.6 444 67.8
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 7.9e-162 574.7 460 64.6
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 6.7e-161 571.6 455 66.6
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 4.3e-160 568.9 454 65.4
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 4.5e-157 558.9 443 64.6
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 2.1e-146 523.5 467 59.3
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 9.7e-144 514.6 457 63.0
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 8.2e-143 511.5 447 61.7
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.0e-140 504.6 330 76.4
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 8.5e-140 501.5 443 60.9
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 2.0e-136 490.3 464 57.3
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.4e-126 457.6 268 85.8
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.4e-126 457.6 268 85.8
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 1.8e-126 457.2 454 53.5
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 8.2e-119 431.8 467 49.3
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 1.7e-116 424.1 451 53.7
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 7.7e-101 372.1 328 57.0
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.2e-87 327.4 206 79.1
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 5.1e-76 289.7 223 65.9
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 1.5e-72 278.1 213 65.7
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 3.4e-72 276.9 211 65.9
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 1.0e-68 265.4 236 58.5
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 3.4e-64 250.4 221 57.5
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 1.0e-52 212.2 142 76.1
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.1e-43 182.2 142 66.2
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.5e-43 181.0 142 65.5
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 5.6e-43 179.9 157 65.0
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 6.9e-41 172.9 92 93.5
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 1.3e-39 168.7 134 62.7
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 7.1e-38 162.9 159 61.6
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 2.2e-31 141.4 91 73.6
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 2.9e-31 141.0 129 56.6
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 1.0e-23 115.9 380 30.5
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 7.9e-21 106.3 67 73.1
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.2e-08 65.9 205 30.2
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 2.9e-07 61.2 71 46.5
Cpa.g.sc3.375 Carica papaya HOM05D000419 ORTHO05D000692 1.1e-06 59.3 81 40.7
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 2.5e-06 58.2 89 39.3
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 9.4e-06 56.2 150 32.0


User provided reference genes

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